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Updated the CMake scripts for finding CUDA, LibXml2 and MPI with the latest 2.8.2...
2010-08-12
Ros
s
en Apo
s
t
o
lov
Updat
e
d the CMake scripts
for find
i
ng
CUDA,
LibXml2
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
Rosse
n
Apostolov
Fixed
b
roken
l
inking wi
t
h single pre
c
ision fftw3 in
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
Rossen Apostolov
Added
a
ne
w
fi
l
e INSTALL
.
cmake with instal
l
ation instructi
o
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
Ros
s
en Apostolov
Merge br
a
nch
'rele
a
se-4-5-pa
t
ches' of git
.
groma
c
s
.
org
.
.
.
commit
|
commitdiff
|
tree
2010-08-11
Rossen Aposto
l
ov
CMake builds no
w
ins
t
all
GMX
R
C* files
.
commit
|
commitdiff
|
tree
2010-08-11
Rossen Apostolov
F
i
x for CMak
e
b
u
ilds
s
o
that
t
h
ey don
'
t fail
e
v
en when
.
.
.
commit
|
commitdiff
|
tree
2010-08-10
Rossen
A
postolov
Bumped version
to 4
.
5-beta3
commit
|
commitdiff
|
tree
2010-08-10
Ro
s
sen
A
p
o
stolov
F
i
xed a typo in src/tools/
C
MakeLis
t
s
.
txt
.
commit
|
commitdiff
|
tree
2010-08-10
Rossen Aposto
l
ov
Ad
d
ed missing
N
U
L
L in cha
i
n
sep enum in pd
b
2g
m
x
.
commit
|
commitdiff
|
tree
2010-08-04
R
o
ssen A
p
os
t
olov
Fix share/html/o
n
l
ine/mdp_opt
.
html
.
commit
|
commitdiff
|
tree
2010-08-04
Rossen Apo
s
tolov
Fixe
d
c
onfi
g
ure
.
ac typo regrading qmmm-orca
.
commit
|
commitdiff
|
tree
2010-08-02
Rossen
A
postol
o
v
New beta
r
ele
a
s
e
.
commit
|
commitdiff
|
tree
2010-07-29
Ross
e
n
A
postol
o
v
Added *
.
pc
.
cmakein files for
distribution
commit
|
commitdiff
|
tree
2010-07-29
Rosse
n
Ap
o
stolov
Remov
e
d
OpenMM in
t
erface f
r
om autoconf, use CMa
k
e in
s
tead
.
.
.
commit
|
commitdiff
|
tree
2010-07-29
Rossen Apo
s
tolov
F
i
xed
a
typo in prev
i
ous Makefil
e
.
am commit
commit
|
commitdiff
|
tree
2010-07-29
R
ossen Ap
o
stolov
Ad
d
ed fo
r
distribution some extra file
s
needed by CMake
.
commit
|
commitdiff
|
tree
2010-07-29
Rossen
Ap
o
stol
o
v
Merge b
r
anch 'master
'
of git
.
g
r
o
macs
.
org:groma
c
s
commit
|
commitdiff
|
tree
2010-07-29
Ros
s
en A
p
ostolov
F
i
xed
t
ypos in previous commit
.
commit
|
commitdiff
|
tree
2010-07-29
Ross
e
n Apost
o
lov
Added missing
assem
b
ly files in nonbonded/nb_ker
n
el_x8
6
_64_s
.
.
.
commit
|
commitdiff
|
tree
2010-07-26
Rossen Apostolov
More
m
a
ke distcheck fixes
.
commit
|
commitdiff
|
tree
2010-07-26
Rossen Apost
o
lov
make
distcheck
f
ixes
commit
|
commitdiff
|
tree
2010-07-23
R
o
ssen Apo
s
t
o
lov
Adj
u
st
e
wald_rtol
w
hen pass
i
ng i
t
to Ope
n
MM
.
commit
|
commitdiff
|
tree
2010-07-21
R
o
ssen Apostolo
v
ewald_rtol
adjustment for Op
e
nMM
.
commit
|
commitdiff
|
tree
2010-07-20
R
o
ssen
A
postolov
Added S
H
ARED_VERSION_IN
F
O to
l
ib
g
mxpr
e
process
.
commit
|
commitdiff
|
tree
2010-07-20
Rossen Aposto
l
ov
Mov
e
d
the
X
11 automake dep
e
nde
n
cy flag
i
nside ng
m
x
.
commit
|
commitdiff
|
tree
2010-07-20
Ross
e
n Apostolov
Disable
d
adjustm
e
nt of ewal
d
_rtol for
O
p
e
nMM
.
commit
|
commitdiff
|
tree
2010-07-20
Ross
e
n Apostol
o
v
B
y d
e
fault G
M
X_ACCELERATION i
s
now "auto"
.
commit
|
commitdiff
|
tree
2010-07-20
Rossen Apo
s
tolov
Added
support for
OpenMM-2
.
0, an
d
CUDA-3
.
1 is now required
.
commit
|
commitdiff
|
tree
2010-07-02
Rossen Apost
o
lov
Disable by defau
l
t ia6
4
asse
m
bly l
o
ops
.
Those will
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
Rossen Apostol
o
v
Merge br
a
nch 'master' of git
.
gromacs
.
o
r
g:groma
c
s
commit
|
commitdiff
|
tree
2010-07-02
Rossen Apos
t
olov
Dis
a
ble AllvsAll kernels f
o
r
ve
r
y small sy
s
t
e
m
s (<
.
.
.
commit
|
commitdiff
|
tree
2010-06-24
R
ossen Aposto
l
o
v
Initia
l
CTest supp
o
rt
commit
|
commitdiff
|
tree
2010-06-23
Rossen
A
post
o
lov
Incr
e
ased SHARED_VERSION_INF
O
to 6:0:0 (
c
l
o
sing bug
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Rossen Ap
o
stolo
v
Small cleanup of t
h
e openmm section in mdrun
.
c
commit
|
commitdiff
|
tree
2010-06-16
Ros
s
e
n Apostolov
Merge
branch 'm
a
ster' of git
.
gromacs
.
or
g
:gromac
s
commit
|
commitdiff
|
tree
2010-06-16
Rosse
n
Ap
o
stol
o
v
Fix
e
d the command
l
ine o
p
tions for G
P
U binar
i
es
.
commit
|
commitdiff
|
tree
2010-06-08
Rossen
A
posto
l
ov
Merge branch 'master' of git
.
gr
o
macs
.
o
rg:grom
a
c
s
commit
|
commitdiff
|
tree
2010-06-08
R
o
ssen Apostolov
Added missing C-term
i
nal oxyg
e
ns
O
C1 an
d
OC2 to
t
he
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Rossen Apostolo
v
Issue
a
w
a
rning a
b
out
u
sing h
a
r
d
c
o
ded OBC scale factors
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
R
o
ssen
Apostolov
OpenMM
interface: i
s
s
u
e a warning w
h
en the s
p
eci
f
ied
.
.
.
commit
|
commitdiff
|
tree
2010-05-14
Ross
e
n
Apostolov
The
relative error for c
a
lculat
i
on of Ewald a
n
d PME
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Rossen Apo
s
tolov
Merge br
a
nc
h
'
m
aste
r
' of git
.
gromacs
.
org
:
gromacs
commit
|
commitdiff
|
tree
2010-05-12
R
o
ssen Apostolov
F
i
x for Ur
e
y-
B
r
adley potential in Open
M
M
commit
|
commitdiff
|
tree
2010-05-11
Rossen Apostol
o
v
Added support for U
r
ey-Bradley potentials
t
o the openmm
.
.
.
commit
|
commitdiff
|
tree
2010-05-04
Rossen A
p
ostolov
Fi
x
ed im
p
ro
p
er
e
rror message
in openmm_wrapper
.
commit
|
commitdiff
|
tree
2010-04-01
Rossen Apostolov
Minor fixes of typos
.
commit
|
commitdiff
|
tree
2010-03-31
Ro
s
sen Apostol
o
v
F
i
xed a
g
mx_warning crash
i
n
openmm_wrapp
e
r
.
cpp
commit
|
commitdiff
|
tree
2010-03-31
Rossen
A
p
o
stol
o
v
Fix
e
d
src/contrib/op
t
ions
.
c to use
t
he ne
w
parse
_
common_args
.
.
.
commit
|
commitdiff
|
tree
2010-03-27
R
ossen A
p
o
stolov
O
pen
M
M: "md"
o
ption is now ac
c
ep
t
ed
.
commit
|
commitdiff
|
tree
2010-03-24
Rossen Apostolov
A
l
lowing also CUDA versions
l
a
ter than 2
.
3
.
commit
|
commitdiff
|
tree
2010-03-24
R
o
ssen Apostolov
Si
g
na
l
h
and
l
ing is now
e
na
b
led for t
h
e
o
penmm platform
.
commit
|
commitdiff
|
tree
2010-03-17
Rossen Apo
s
to
l
o
v
op
e
nmm:
s
ome
cleanup in
md_open
m
m
.
c a
n
d mdrun
.
c
commit
|
commitdiff
|
tree
2010-03-12
R
o
ssen
A
postolov
E
n
a
b
l
e
d checkpoints in Op
e
nM
M
.
commit
|
commitdiff
|
tree
2010-03-12
Ross
e
n
Apostolov
Au
t
omatically di
s
a
ble threads for OpenMM
b
u
i
lds
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apos
t
olov
Various fi
x
es
.
commit
|
commitdiff
|
tree
2010-03-11
Ro
s
s
e
n Apo
s
tolov
S
m
all fixes in mdr
u
n desc
.
;
enable periodic mo
l
e
cules
commit
|
commitdiff
|
tree
2010-03-11
Szila
r
d Pall
Open
M
M build not
d
ependent on fftw anymore
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
f
i
xed mdrun verbosity
w
ith Open
M
M
build
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pa
l
l
fixed a missing comma and a typo
i
n
o
pe
n
m
m
_wrapper
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apo
s
tolov
Enalbed -
m
ax
h
option for usage with Ope
n
MM
binaries
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
C
l
eaned
up
do
_
md_
o
penmm
.
commit
|
commitdiff
|
tree
2010-03-11
Sz
i
lard
P
all
Delete s
r
c/kernel/do_md_openmm_nopatch
.
h, it'
s
not
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pal
l
Mi
n
or cle
a
n
up, some rear
r
ang
a
m
ent
s
,
a
nd comme
n
ting
.
commit
|
commitdiff
|
tree
2010-03-11
S
zilard
P
all
Revert
e
d stupid change in C
M
a
leList
s
.
t
xt
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pal
l
Renamed
md_open
m
m
i
nto openmm_
w
rapp
e
r,
a
nd do_md_openmm
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
R
eworked t
h
e inte
g
rator an
d
t
herm
o
st
a
t options
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
F
ixed the wro
n
g
o
u
tput time fram
e
s
commit
|
commitdiff
|
tree
2010-03-11
Rossen Aposto
l
o
v
do_md_opennmm
.
h (aka patched) now wor
k
s but the t
i
me
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
I
n
itial portin
g
,
d
o_md_openmm_nopatch
.
h is used
.
commit
|
commitdiff
|
tree
2009-10-02
Rossen Apo
s
tol
o
v
Users ar
e
now refered to the new w
e
bsite in case
o
f
.
.
.
commit
|
commitdiff
|
tree
2009-08-17
Rossen Apo
s
tolov
Fixe
d
incorrect sca
l
ing of forces in re
c
i
p
ro
c
al spac
e
.
.
.
commit
|
commitdiff
|
tree