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Add readConfAndTopology
2016-10-08
Berk Hess
Add
r
eadConfAndTopology
commit
|
commitdiff
|
tree
2016-10-03
Philip
L
och
e
EW3
D
C for non-neutral sy
s
tems
commit
|
commitdiff
|
tree
2016-09-29
Berk He
s
s
Use
std:
:
vec
t
or in t_
s
tat
e
commit
|
commitdiff
|
tree
2016-09-29
Berk
Hess
Add f
l
ags for
o
ptional t_atoms en
t
ries
commit
|
commitdiff
|
tree
2016-09-20
Berk
H
ess
Rem
o
ve state duplica
t
ion
i
n serial
r
un
s
commit
|
commitdiff
|
tree
2016-09-20
David van der Sp
o
el
Made correlatio
n
func
t
ion
routine us
e
std::vector
commit
|
commitdiff
|
tree
2016-09-16
Ber
k
Hess
Made distanc
e
restraint
s
w
o
r
k
w
i
th threads a
n
d
DD
commit
|
commitdiff
|
tree
2016-09-15
Aleksei I
u
pinov
Mo
v
e the PME Ewald coeffici
e
nts to the PM
E
st
r
ucture
commit
|
commitdiff
|
tree
2016-09-13
Roland Schulz
Tidy: mo
d
er
n
i
z
e-use
-
e
m
place
commit
|
commitdiff
|
tree
2016-09-13
Berk
Hess
Cha
n
ge ED a
n
d sw
a
pstate to pointers in t_state
commit
|
commitdiff
|
tree
2016-09-11
V
edran M
i
letić
Print OpenCL er
r
or str
i
ng
i
nstead
o
f error code
commit
|
commitdiff
|
tree
2016-09-10
Ber
k
He
s
s
Remove con
t
inuation from convert_tpr
commit
|
commitdiff
|
tree
2016-09-10
Aleksei Iupinov
Fix PME
data destructor not
being called
commit
|
commitdiff
|
tree
2016-09-05
D
a
vid van der Spoel
Merge "Me
r
ge branch release
-
2016"
commit
|
commitdiff
|
tree
2016-08-27
Szilárd P
á
ll
Mak
e
ASAN/TSAN/MSAN build types easier to discover
commit
|
commitdiff
|
tree
2016-08-27
Ma
r
k Abra
h
am
Stop using g
m
x_fatal in grompp
commit
|
commitdiff
|
tree
2016-08-27
Teemu
M
ur
t
ola
S
u
pport K
e
yValu
e
Tree objects in refdata
commit
|
commitdiff
|
tree
2016-08-27
B
e
rk Hess
Redu
c
e
rounding errors in SETTLE
commit
|
commitdiff
|
tree
2016-08-27
Roland S
c
hulz
F
ix bui
l
d with GMX_
U
SE_TNG=off
commit
|
commitdiff
|
tree
2016-07-31
Da
v
id
van der Spoel
Merge "Merge branch release-5-1 into release-2016"
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
Vedra
n
M
i
letić
Print w
o
rking dir before command line
commit
|
commitdiff
|
tree
2016-07-08
Davi
d
van der Spoel
M
erge
"Merge branch relea
s
e-5
-
1
int
o
rel
e
a
se-2016"
.
.
.
commit
|
commitdiff
|
tree
2016-07-08
S
z
ilárd
P
áll
User guide clarifications
commit
|
commitdiff
|
tree
2016-07-07
Berk Hess
R
e
lax pull
PBC che
c
k
commit
|
commitdiff
|
tree
2016-07-03
Berk
Hess
Add
g
ro
m
pp check for pull gr
o
up
commit
|
commitdiff
|
tree
2016-06-26
B
e
rk
Hess
Fix vs
i
t
e
bug
w
ith MPI+OpenMP
commit
|
commitdiff
|
tree
2016-06-21
Ber
k
H
es
s
Fix b
u
g with fbposre
s
+
M
PI+Ope
n
MP
commit
|
commitdiff
|
tree
2016-05-30
B
erk Hess
Add gr
o
mpp ch
e
ck for
unb
o
und atoms
commit
|
commitdiff
|
tree
2016-05-08
Mark Abra
h
am
Fix con
s
tant
s
, u
n
its and
co
n
vers
i
o
n
factors
commit
|
commitdiff
|
tree
2015-12-09
Teemu Mur
t
ola
Split txtdump
.
*
, part
1
commit
|
commitdiff
|
tree
2015-12-05
Magnus Lundborg
Write f
o
r
c
es and v
e
locities to co
m
pres
s
ed TNG
.
commit
|
commitdiff
|
tree
2015-11-22
D
a
vi
d
van der Spoe
l
Cl
e
a
nups in le
g
acyheader/
t
ypes/commrec
.
h
commit
|
commitdiff
|
tree
2015-11-20
Mar
k
Abraham
Split
w
allcycle interf
a
ce
commit
|
commitdiff
|
tree
2015-11-14
Berk Hess
Optimize
d
the bond
e
d thr
e
ad force reduction
commit
|
commitdiff
|
tree
2015-11-12
David
v
an
d
er
Spoel
Mov
e
d copyrite
.
*
to filei
o
from gmxlib and
l
egacyheade
r
s
.
commit
|
commitdiff
|
tree
2015-10-18
David van d
e
r Sp
o
el
Move
d
p
b
c/cu
t
-off relat
e
d utiliti
e
s from
t
y
p
edefs to
.
.
.
commit
|
commitdiff
|
tree
2015-10-15
Ber
k
Hess
Fixed nb
n
xn_4xN p
e
rformance regression
commit
|
commitdiff
|
tree
2015-10-07
Ber
k
Hess
Fix bugs
with intermol interactions and D
D
commit
|
commitdiff
|
tree
2015-10-02
D
avid va
n
d
e
r
Spoel
Remo
v
e
d simple
.
h f
r
om nb_
k
er
n
e
l
_avx_256
_
XX
commit
|
commitdiff
|
tree
2015-10-01
Teemu Murtola
Enable time unit a
n
d selections
i
n ICommandLineOpt
i
ons
M
odule
commit
|
commitdiff
|
tree
2015-09-29
Mark Abraha
m
Clean up of tables code
commit
|
commitdiff
|
tree
2015-09-29
M
ark Abr
a
h
a
m
Move tabl
e
s
.
c to new module and C++
commit
|
commitdiff
|
tree
2015-09-22
Davi
d
van der Spoe
l
R
e
moved four i
n
c
ludes from legacyheaders/t
y
pedefs
.
h
commit
|
commitdiff
|
tree
2015-07-29
Erik Linda
h
l
Upd
a
te naming standards
to avoid hungarian
notation
.
.
.
commit
|
commitdiff
|
tree
2014-09-22
Ma
r
k Abraha
m
Mo
r
e qu
o
tes
commit
|
commitdiff
|
tree
2014-09-22
Erik Lindahl
More quotes
commit
|
commitdiff
|
tree
2014-09-19
Teemu
M
urtola
Ad
d
suppo
r
t f
o
r cum
u
lative hi
s
tograms
commit
|
commitdiff
|
tree
2014-06-13
Berk Hess
M
a
de shell
s
w
or
k
with the Verlet sc
h
eme
commit
|
commitdiff
|
tree
2014-06-12
Be
r
k
Hes
s
Mad
e
gmxc
h
ec
k
-rmsd work again with
f
orces
commit
|
commitdiff
|
tree
2014-06-12
Erik L
i
ndahl
Make s
u
re genrestr
uses t
h
e disre_up2 param
e
ter
commit
|
commitdiff
|
tree
2014-06-12
Erik Lindahl
Removed undocume
n
ted
-
m
ap
a
nd -
m
data optio
n
s from
g_sham
.
commit
|
commitdiff
|
tree
2014-06-12
E
rik Lindahl
Alwa
y
s
w
r
ite output fr
o
m geni
o
n
commit
|
commitdiff
|
tree
2014-06-11
Berk Hess
Made repl_e
x
tim
e
s
t
e
p
more readable
commit
|
commitdiff
|
tree
2014-06-07
Teemu M
u
rtola
Impr
o
ve
(
Selec
t
ion|FileName)Op
t
ionMa
n
ager handling
commit
|
commitdiff
|
tree
2014-06-07
Teemu Murtola
Replace all c
o
mmand
l
ine
pa
r
sing with
O
p
tions
commit
|
commitdiff
|
tree
2014-06-07
T
eemu Murto
l
a
M
o
ve residuetype
h
andling to its o
w
n file
.
commit
|
commitdiff
|
tree
2014-06-07
Te
e
mu
Murto
l
a
Rem
o
ve support
f
or "ol
d
" ind
e
x
f
ile fo
r
m
a
t
commit
|
commitdiff
|
tree
2014-05-31
Mag
n
us Lundbor
g
Bug
f
ix
in the TNG library to improve reading
.
commit
|
commitdiff
|
tree
2014-05-18
Teemu Murtola
Move 3dview
.
* to programs/view/
commit
|
commitdiff
|
tree
2014-03-17
Teemu Mur
t
ola
Update m
a
nua
l
anal
y
sis
s
ecti
o
n
commit
|
commitdiff
|
tree
2014-02-21
Nin
a
Fischer
Added ne
w
amber
9
9sb-ildn-bsc0
f
o
r
ce field
.
commit
|
commitdiff
|
tree
2014-01-19
M
ark
Abraham
C
l
ean
u
p a
f
te
r
g
mxcpp
commit
|
commitdiff
|
tree