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TNG version 1.7.5
2015-05-16
Mag
n
u
s Lundborg
TNG vers
i
on
1
.
7
.
5
commit
|
commitdiff
|
tree
2015-05-16
Alexey Shvetsov
Make
bond-ato
m
types case sens
i
tiv
e
commit
|
commitdiff
|
tree
2015-05-13
T
ee
m
u Murto
l
a
Remove remai
n
ing old-html cont
e
nt
commit
|
commitdiff
|
tree
2015-05-10
Mark
Abraham
Merge
"Merge br
a
nc
h
re
l
e
a
se-5-0"
commit
|
commitdiff
|
tree
2015-05-10
T
eemu Murtola
P
r
i
nt co
r
rect order fo
r
include ord
e
r
/
style issues
commit
|
commitdiff
|
tree
2015-05-10
Teemu Murtol
a
Improve
b
uild
system for Sphinx
commit
|
commitdiff
|
tree
2015-05-10
Teemu Murtola
Convert develo
p
er m
a
nual t
o
r
st
commit
|
commitdiff
|
tree
2015-05-06
Mark Abraham
Fixed recent
l
y-in
t
roduced cou
p
le-lambda war
n
ing message
commit
|
commitdiff
|
tree
2015-05-06
S
z
il
á
rd Páll
Merge "
M
erge relea
s
e
-4-
6
in
t
o rel
e
ase-5-0" into release-5-
0
commit
|
commitdiff
|
tree
2015-05-06
Mark Abraham
Fix
S
IMD unit tests on
B
G/Q
commit
|
commitdiff
|
tree
2015-05-05
T
eemu Mu
r
tola
Avoid roun
d
i
n
g error
s
a
ff
e
c
t
ing results in
o
ne te
s
t
commit
|
commitdiff
|
tree
2015-04-30
Olivier Fisette
Fix error
hand
l
ing in gmx_tmp
n
am
commit
|
commitdiff
|
tree
2015-04-30
Michael Shirts
F
i
x for rarely occuring replica exchange
e
r
r
or
.
commit
|
commitdiff
|
tree
2015-04-28
M
a
rk Abraham
Add appl
i
cation-cl
o
c
k NVML-based suppor
t
for Quadro
.
.
.
commit
|
commitdiff
|
tree
2015-04-27
Mark Abraha
m
Clea
n
u
p
r
e
mnants i
n
mdrun
commit
|
commitdiff
|
tree
2015-04-21
Szilárd Páll
Allow man
u
ally setting target GPU archi
t
ectures
commit
|
commitdiff
|
tree
2015-04-21
Magn
u
s Lundbo
r
g
TNG version 1
.
7
.
3
commit
|
commitdiff
|
tree
2015-04-21
Mark
Abraham
Merge "Merge branch release-5
-
0"
commit
|
commitdiff
|
tree
2015-04-17
Berk Hess
Add value_ref and value to pu
l
l_coo
r
d
_
t
commit
|
commitdiff
|
tree
2015-04-17
Sz
i
lárd Páll
define CU
D
A
v
ersion and
texobj su
p
port in confi
g
.
h
commit
|
commitdiff
|
tree
2015-04-17
Ma
r
k
Abraham
Add
c
omment about Ander
s
en themost
a
t an
d
co
n
st
r
aints
commit
|
commitdiff
|
tree
2015-04-17
Dav
i
d van der Spo
e
l
Updated
e
x
ponentia
l
fittin
g
to make it ro
b
us
t
.
commit
|
commitdiff
|
tree
2015-04-08
Ber
k
Hess
Added pull geometry direction
-
relative
commit
|
commitdiff
|
tree
2015-04-01
Ma
r
k Abraham
Initialize n_tr
i
cvec field of t_pbc alw
a
ys
commit
|
commitdiff
|
tree
2015-04-01
Berk He
s
s
Corrected f
o
rce-
s
wit
c
h
manual section
commit
|
commitdiff
|
tree
2015-03-30
Mar
k
Abraham
Impro
v
e
d man-page machin
e
ry
commit
|
commitdiff
|
tree
2015-03-25
Erik Lindahl
Quote fr
o
m Jen-Hsun at
t
he NVIDIA GTC confe
r
enc
e
2
0
15
commit
|
commitdiff
|
tree
2015-03-19
B
e
r
k
Hess
Remov
e
d
reduction
o
f
dH/dl without FE
commit
|
commitdiff
|
tree
2015-03-13
Mark Abraham
Made GP
U
w
a
rning mes
s
ages more
user fri
e
ndly
commit
|
commitdiff
|
tree
2015-03-12
Berk
Hes
s
Fixed mdrun
fp e
x
c
e
pti
o
n wi
t
h -debu
g
commit
|
commitdiff
|
tree
2015-03-11
Berk Hess
Added up
d
ate x
c
opy
-
back to up
d
ate timer
commit
|
commitdiff
|
tree
2015-03-06
Berk Hess
Improve
threadi
n
g o
f
bon
d
eds
commit
|
commitdiff
|
tree
2015-03-06
Mark Abraham
Res
t
ore wallcycle subcounte
r
name to "Bonded F
"
commit
|
commitdiff
|
tree
2015-03-05
Mark Abraham
Fix And
e
r
s
en thermostats
commit
|
commitdiff
|
tree
2015-03-05
B
e
rk Hes
s
SIM
D
acceler
a
tion fo
r
L
INCS
commit
|
commitdiff
|
tree
2015-03-04
Berk He
s
s
COM pu
l
li
n
g options per c
o
o
r
d
, improved c
y
linder
commit
|
commitdiff
|
tree
2015-03-04
Roland
S
chulz
F
ix GCC5 warni
n
g
s
commit
|
commitdiff
|
tree
2015-03-03
Mark Abraham
Re-implement g
m
x tune_p
m
e -cpi
commit
|
commitdiff
|
tree
2015-03-03
Er
i
k Lindahl
A
dded s
i
ngle-acc
u
racy SI
M
D double math functi
o
ns
commit
|
commitdiff
|
tree
2015-03-03
Berk
Hess
Fix di
v
b
y
ze
r
o in
P
P
/PME ratio
commit
|
commitdiff
|
tree
2015-03-03
M
a
rk Abraham
Add test t
h
at plain multi-simulation wo
r
ks
commit
|
commitdiff
|
tree
2015-03-02
Davi
d
van der Spoel
Updated documentation for electric f
i
elds
.
commit
|
commitdiff
|
tree
2015-03-02
Berk Hess
Add
e
d parentheses f
o
r casts
in SIMD macros
commit
|
commitdiff
|
tree
2015-03-02
Roland Schulz
Don
'
t sea
r
ch inst
a
ll
a
tio
n
p
r
efix if binar
y
is n
o
t
f
o
und
commit
|
commitdiff
|
tree
2015-03-02
Mark Abraham
Add infr
a
stru
c
ture for
r
unning M
P
I integratio
n
test
s
commit
|
commitdiff
|
tree
2015-02-25
R
oland Schulz
C+
+
conversi
o
n for PME spread/ga
t
h
e
r
commit
|
commitdiff
|
tree
2015-02-25
Mark
A
braham
Add
c
onte
n
t to
user guide
commit
|
commitdiff
|
tree
2015-02-25
Mark Abra
h
am
Split pme
.
c into multiple
f
il
e
s
commit
|
commitdiff
|
tree
2015-02-25
Mark Abrah
a
m
Ad
d
mdp-op
t
ion
s
to
u
ser guide
commit
|
commitdiff
|
tree
2015-02-24
Berk Hess
F
i
xed parallel distribu
t
ion
a
n
d thread
count reporting
commit
|
commitdiff
|
tree
2015-02-24
Er
i
k Lind
a
hl
Add AVX-512F S
I
M
D
s
uppo
r
t
commit
|
commitdiff
|
tree
2015-02-18
Mark Abraham
Reenable
SIM
D
f
or R-B
d
ihedral
s
commit
|
commitdiff
|
tree
2015-02-14
Erik Marklund
g
m
x hbond no lo
n
ger re
m
oves PBC when non
e
is present
commit
|
commitdiff
|
tree
2015-02-13
Mark Abraham
Implement
e
d docu
m
e
ntation with
s
phinx
commit
|
commitdiff
|
tree
2015-02-12
Vedra
n
Mile
t
i
ć
Fix re
m
oval of symlin
k
s crea
t
ed
during i
n
s
talla
t
ion
commit
|
commitdiff
|
tree
2015-02-10
Rola
n
d Schulz
Don'
t
set C
F
LAGS f
o
r Phi in too
l
chain
commit
|
commitdiff
|
tree
2015-02-07
Roland Schulz
M
a
ke Find
B
o
o
st quite
commit
|
commitdiff
|
tree
2015-02-07
T
e
e
mu Mu
r
to
l
a
S
uppor
t
m
o
re complex fixed position selections
commit
|
commitdiff
|
tree
2015-02-06
Berk Hess
Re-enabled SIMD for angles and
d
ihedrals
commit
|
commitdiff
|
tree
2015-02-04
Berk Hess
Correct
CUDA ke
r
nel energy flag
commit
|
commitdiff
|
tree
2015-02-02
Roland Schulz
F
i
x FP exception
i
n
F
E
commit
|
commitdiff
|
tree
2015-02-02
Mark Abr
a
ham
Fix
u
s
e
o
f sim
d
.
h
commit
|
commitdiff
|
tree
2015-01-29
T
eemu Murtola
Add input file opt
i
o
ns t
h
at accept m
i
ssing fi
l
es
commit
|
commitdiff
|
tree
2015-01-29
John Baxter
R
e
mov
e
s some unne
c
essary ternary conditionals
commit
|
commitdiff
|
tree
2015-01-24
Teem
u
Murtola
Im
p
rove selection
e
rror m
e
ssages (use exceptions)
commit
|
commitdiff
|
tree
2015-01-23
M
a
rk Abraham
C
h
ange
some listed-
f
orces
headers to be libr
a
ry-
o
nly
commit
|
commitdiff
|
tree
2015-01-23
Teemu
Murtola
Ignore te
s
t-only dependency cycles
commit
|
commitdiff
|
tree
2015-01-20
T
e
emu Murtola
Make data fil
e
path search m
o
re r
e
usable
commit
|
commitdiff
|
tree
2015-01-20
T
eemu Murtola
Co
n
vert forcefi
e
ld search to C++
commit
|
commitdiff
|
tree
2015-01-19
Erik
L
in
d
ahl
Added two quotes from Jul
i
e Bernauer hab
i
litation
commit
|
commitdiff
|
tree
2015-01-19
James Barnett
Add ti
p
4pew parameters to
oplsa
a
.
ff
commit
|
commitdiff
|
tree
2015-01-19
T
eemu
Murto
l
a
Remov
e
Ana
l
ysisNeighborhood::setU
s
eBoundingBox()
commit
|
commitdiff
|
tree
2015-01-17
Teemu Mu
r
tola
Mer
g
e "Merge bra
n
ch release-5-0"
commit
|
commitdiff
|
tree
2015-01-16
Ma
r
k Abraham
F
i
x B
l
u
e
Gene/Q build with recent CMa
k
e
commit
|
commitdiff
|
tree
2015-01-15
Berk Hess
Fix
a
llocation is
s
ue wit
h
VV i
n
tegra
t
or
commit
|
commitdiff
|
tree
2015-01-14
Mark Abraham
Fix and
s
uppress warning
s
on BlueGene/Q
commit
|
commitdiff
|
tree
2015-01-14
Mark Abraham
Refactor OpenMP
i
n
itializat
i
on
commit
|
commitdiff
|
tree
2015-01-14
Mar
k
A
braham
Remove tempora
r
y
symlin
k
s fro
m
pre-5
.
0 tool names
commit
|
commitdiff
|
tree
2015-01-09
Mark Abraham
Remove
m
dru
n
-testverlet
commit
|
commitdiff
|
tree
2015-01-08
Tee
m
u Murtola
Re
f
act
o
r logic
f
or finding share/top/ f
i
l
es
commit
|
commitdiff
|
tree
2015-01-08
Ma
r
k
A
b
rah
a
m
F
i
x
floating-point exception
commit
|
commitdiff
|
tree
2015-01-08
Tee
m
u M
u
r
tola
Closed some
.
xv
g
files t
h
at were
b
eing left
open
commit
|
commitdiff
|
tree
2015-01-07
Teemu Murtola
Spl
i
t
unit test in
i
t fr
o
m testo
p
tions
.
cpp
commit
|
commitdiff
|
tree
2015-01-06
Tee
m
u Murtola
Use analysis nbsearch for su
r
face area cal
c
ula
t
ion
commit
|
commitdiff
|
tree
2015-01-05
Teemu Murtola
Minima
l
C++ rep
l
acement for
rvec
commit
|
commitdiff
|
tree
2015-01-05
T
e
emu Murtola
C
l
arify GMX_MPI manag
e
men
t
commit
|
commitdiff
|
tree
2015-01-05
Roland Sc
h
ulz
E
nable fp-exceptions
commit
|
commitdiff
|
tree
2015-01-03
Teemu
M
urtol
a
Mi
n
or selection clarifications
commit
|
commitdiff
|
tree
2015-01-03
Teemu Mur
t
ola
Fix
c
rash wi
t
h
'z of
.
.
.
'
wi
t
hin an e
x
pression
commit
|
commitdiff
|
tree
2014-12-28
Te
e
mu M
u
r
t
ola
Add hel
p
er f
o
r
generi
c
C++ command-line modul
e
s
commit
|
commitdiff
|
tree
2014-12-22
Ber
k
Hess
Fi
x
ed
pbc=xy
+
2 walls
+ Ver
l
et scheme
commit
|
commitdiff
|
tree
2014-12-22
Berk He
s
s
Fi
x
bu
g
F
E + GPU +
2
/3D domain decompositi
o
n
commit
|
commitdiff
|
tree
2014-12-17
Te
e
mu
Murto
l
a
Make
'
gmx sasa' calcul
a
tion
thread-s
a
fe
commit
|
commitdiff
|
tree
2014-12-17
T
e
e
mu Murtola
Remove some bac
k
wards-compatibility glue for Jenkins
commit
|
commitdiff
|
tree
2014-12-17
Roland Schulz
Merge "Merge b
r
a
nch
'
release-5-0'"
commit
|
commitdiff
|
tree
2014-12-17
R
o
land
S
c
hulz
Fix cppcheck-1
.
67 warnings
commit
|
commitdiff
|
tree
2014-12-16
Te
e
mu Murtola
Make '
g
mx sasa'
v
o
lu
m
e
computation
transl
a
tion-inva
r
iant
commit
|
commitdiff
|
tree
2014-12-16
M
a
rk Ab
r
aham
Move
c
o
de to prepare for GPU int
e
rface re
w
ork
commit
|
commitdiff
|
tree
2014-12-15
Rola
n
d Schulz
Fix NVM
L
detectio
n
on
Windows
commit
|
commitdiff
|
tree
2014-12-15
Ma
r
k Abraham
Merge "Merge r
e
lea
s
e
-
4
-6
i
nto re
l
ease-5-0" into re
l
ease-5-0
commit
|
commitdiff
|
tree
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