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Create gromacs/mdrun module and move code there
2018-04-05
M
a
rk Abraham
C
r
eate gromacs/mdru
n
module and
m
ove code there
commit
|
commitdiff
|
tree
2018-04-04
Mark Abrah
a
m
Q
u
iet checkpoint readin
g
commit
|
commitdiff
|
tree
2018-04-03
Mar
k
Abraham
M
e
rge
"
Merg
e
branch
release-2018"
commit
|
commitdiff
|
tree
2018-03-28
Mark Abraham
Free more
memory in grompp and md
r
un
commit
|
commitdiff
|
tree
2018-03-28
Mark Abraha
m
Merge b
r
anc
h
re
l
e
a
se-2018
commit
|
commitdiff
|
tree
2018-03-27
M
a
rk Abraham
More gcc-8 fixes
f
or POWER
commit
|
commitdiff
|
tree
2018-03-22
Mark Abr
a
h
am
Up
d
ated to pre
p
a
re for
2018
.
2 re
l
ease
commit
|
commitdiff
|
tree
2018-03-21
Ma
r
k
A
b
raha
m
Version
2
018
.
1
commit
|
commitdiff
|
tree
2018-03-21
Mark
Abraham
M
erge
"Merge bra
n
ch
release-2016 into r
e
lease-201
8
.
.
.
commit
|
commitdiff
|
tree
2018-03-21
Ma
r
k Abraha
m
Update
re
l
ease notes for 2018
.
1
commit
|
commitdiff
|
tree
2018-03-20
Mark Abraham
Merge branch
r
elease-2016 into
r
elease-2018
commit
|
commitdiff
|
tree
2018-03-20
Mark Ab
r
a
ham
U
p
date us
e
o
f gpu_id in J
e
n
k
i
n
s
commit
|
commitdiff
|
tree
2018-03-20
Mark Abraham
Updat
e
use of gpu_id
i
n Jen
k
ins
commit
|
commitdiff
|
tree
2018-03-20
Mark
Abraham
Upd
a
te use of gp
u
_i
d
in Jenk
i
n
s
commit
|
commitdiff
|
tree
2018-03-20
M
a
r
k Abraham
Add helper function
to
make a vector
f
r
o
m
a
n Arra
y
R
e
f
commit
|
commitdiff
|
tree
2018-03-19
Mark Abr
a
ham
Fix VSX
SIMD with gcc 8
commit
|
commitdiff
|
tree
2018-03-14
Mark Abraham
Make a persisten
t
ph
y
sical node communicat
o
r
commit
|
commitdiff
|
tree
2018-03-13
Mark Ab
r
aham
Ad
d
mo
r
e const
to uses
of t_commrec and t_inputrec
commit
|
commitdiff
|
tree
2018-03-13
Mark Abraham
Introduce const
r
a
i
n_shak
e
commit
|
commitdiff
|
tree
2018-03-13
Mark Abraham
Me
r
ge "Merge b
r
a
n
c
h release-20
1
8"
commit
|
commitdiff
|
tree
2018-03-12
Mark Abraham
Test
g
cc-
6
and cuda-9
.
0
commit
|
commitdiff
|
tree
2018-03-06
Mark Abraham
Merge
branch
r
elease-2018
commit
|
commitdiff
|
tree
2018-03-06
M
ark Abr
a
h
a
m
Fix
e
d dvdlambd
a
for
SHAKE + FE
commit
|
commitdiff
|
tree
2018-02-28
Mark
A
braham
M
o
ved an
d
removed con
s
traint
c
ode
commit
|
commitdiff
|
tree
2018-02-28
Mark Ab
r
aham
Reorganize
d
con
s
traint code
commit
|
commitdiff
|
tree
2018-02-27
Mar
k
Abraha
m
Fix GPU utils te
s
t
commit
|
commitdiff
|
tree
2018-02-26
M
ark Abraham
Permit define
.
m
dp field to assign values
commit
|
commitdiff
|
tree
2018-02-26
Mar
k
Abraham
Organiz
e
f
o
r r
e
cording 201
6
-era release notes and add
.
.
.
commit
|
commitdiff
|
tree
2018-02-21
M
a
rk Abrah
a
m
Enhanced docs o
f
pimpl
pointer helper
commit
|
commitdiff
|
tree
2018-02-19
Ma
r
k
Abrah
a
m
Remo
v
e c
y
cle su
p
pression
commit
|
commitdiff
|
tree
2018-02-19
Mark Abraham
Disallowed ch
a
nge of ensemble for checkpoi
n
t restart
commit
|
commitdiff
|
tree
2018-02-16
Mark Abraham
Mer
g
e
branch release-201
6
into rele
a
se-2018
commit
|
commitdiff
|
tree
2018-02-16
Mark Abr
a
ham
Bump
e
d patch version for next release
commit
|
commitdiff
|
tree
2018-02-16
Mark Ab
r
aham
M
erge branch
r
e
lea
s
e-2018 into master
commit
|
commitdiff
|
tree
2018-02-16
Mark Abraham
Ve
r
sion 2016
.
5
commit
|
commitdiff
|
tree
2018-02-15
Mark
Abraha
m
U
s
e struct for checkpoint heade
r
co
n
tents
commit
|
commitdiff
|
tree
2018-02-14
M
ark
Abraham
Remove read_ch
e
ckpoint_state
commit
|
commitdiff
|
tree
2018-02-14
M
ark Abra
h
a
m
Use std::vector for ch
e
ckpoint ou
t
putfiles
commit
|
commitdiff
|
tree
2018-02-14
Mark Abra
h
am
M
e
rge branch release-2016 into releas
e
-
2
018
commit
|
commitdiff
|
tree
2018-02-14
Mark Abraham
Fix bug
in ch
e
c
k
poin
t
error checking
commit
|
commitdiff
|
tree
2018-02-14
Mark Abraham
Prepare release note
s
for 2018
.
1
commit
|
commitdiff
|
tree
2018-02-13
Mark Abr
a
ham
Use dea
t
h
t
est only
w
h
en support
e
d
commit
|
commitdiff
|
tree
2018-02-13
Mar
k
Abraha
m
Separate multis
i
m f
r
o
m
co
m
mrec
commit
|
commitdiff
|
tree
2018-02-12
M
a
rk A
b
raham
Remove comm
r
e
c from hardwa
r
e detection
commit
|
commitdiff
|
tree
2018-02-12
Mar
k
Abraham
Analyse threads o
n
node before setting affinities
commit
|
commitdiff
|
tree
2018-02-12
Mark Ab
r
a
ham
Fix readi
n
g old force field files
commit
|
commitdiff
|
tree
2018-02-09
Mark
A
b
r
a
h
am
Merge branch
r
elease-201
8
commit
|
commitdiff
|
tree
2018-02-08
Mark A
b
r
aham
Use m
o
re portable pytho
n
shebangs
commit
|
commitdiff
|
tree
2018-02-08
Ma
r
k Abraham
M
e
r
g
e
"Mer
g
e branc
h
r
e
lease-2016 int
o
release-2018
.
.
.
commit
|
commitdiff
|
tree
2018-02-08
Mark Abraha
m
Merge branch r
e
lease-2016
i
nto release-
2
018
commit
|
commitdiff
|
tree
2018-02-08
Mark A
b
raham
Merge
"
Merge branch '
r
elease-2018' into master"
commit
|
commitdiff
|
tree
2018-02-06
Mark
A
br
a
ham
P
revent lo
g
file energy ave
r
age printing dividing b
y
.
.
.
commit
|
commitdiff
|
tree
2018-02-06
Mark Abrah
a
m
U
s
e is
f
inite
u
n
ambiguously
commit
|
commitdiff
|
tree
2018-01-30
Mark Abraham
Repla
c
e mac
r
os for multi-sim
commit
|
commitdiff
|
tree
2018-01-30
M
a
rk Abraham
Update Goog
l
eTest
t
o
1
.
8
.
0
commit
|
commitdiff
|
tree
2018-01-27
Mark A
b
raham
R
emo
v
e unused declaratio
n
commit
|
commitdiff
|
tree
2018-01-25
Mark Abraham
Remove
u
nused fiel
d
s of t_commrec
commit
|
commitdiff
|
tree
2018-01-25
Mark Abra
h
am
R
e
duc
e
d includes of
c
o
m
mon
h
ead
e
rs in
h
eade
r
s
commit
|
commitdiff
|
tree
2018-01-25
Mark Abr
a
ham
Remo
v
ed mdru
n
-mu
l
ti
commit
|
commitdiff
|
tree
2018-01-24
M
a
rk Abraham
Change multi-sim tes
t
s to use -
m
ultidir
commit
|
commitdiff
|
tree
2018-01-24
Mark A
b
raham
Remo
v
e gmx_inline
commit
|
commitdiff
|
tree
2018-01-24
Ma
r
k
A
braham
Teach in
c
l
u
de so
r
ter t
o
i
gnore cmake-
t
est
f
il
e
s
commit
|
commitdiff
|
tree
2018-01-24
M
a
rk
A
b
raha
m
M
o
ve Windows icc
con
f
ig t
o
p
o
st-submit testing
commit
|
commitdiff
|
tree
2018-01-24
Mark Abraham
Rep
l
ace gmx_bool with bool in
b
i
tmask functions
commit
|
commitdiff
|
tree
2018-01-23
Mark Abraham
Remove support for im
p
licit solvation
commit
|
commitdiff
|
tree
2018-01-23
M
ark Abraham
Rem
o
v
e topology support
for implicit
solvati
o
n
commit
|
commitdiff
|
tree
2018-01-23
M
a
rk Abraham
Preliminary cleanup before removing ifdef
cplusplus
commit
|
commitdiff
|
tree
2018-01-19
Mark Abra
h
am
Merge "Merge branch
'release-2
0
18' into mast
e
r"
commit
|
commitdiff
|
tree
2018-01-19
M
a
rk
A
braham
Add
de
v
-
g
u
ide do
c
s
f
or auto
m
atic u
p
d
ate o
f
regress
i
o
ntests
commit
|
commitdiff
|
tree
2018-01-19
Mark
Abraham
Fixes for i
s
sues found
b
y clang 6
commit
|
commitdiff
|
tree
2018-01-18
Mark Abraham
B
u
m
p
version numbers for
2
0
19 de
v
elopme
n
t
commit
|
commitdiff
|
tree
2018-01-18
Ma
r
k Ab
r
aham
Remove s
u
pport
f
or
B
lueGene
commit
|
commitdiff
|
tree
2018-01-18
M
a
r
k
Abraham
Port
thread
-
MPI t
o
com
p
ile as C++
commit
|
commitdiff
|
tree
2018-01-16
Mark
A
brah
a
m
Merge "Merge re
l
ease-20
1
8 into m
a
s
t
er"
commit
|
commitdiff
|
tree
2018-01-11
Mark
Ab
r
ah
a
m
Remov
e
contrib directory
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Bumped versi
o
n f
o
r next pat
c
h
r
elease
commit
|
commitdiff
|
tree
2018-01-11
Mar
k
Abraham
Version 2018
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Announce in user
log files that fe
a
ture
s
are deprecated
.
commit
|
commitdiff
|
tree
2018-01-10
Mark Abr
a
ham
Fix automated
G
P
U ID
a
s
si
g
n
ment
commit
|
commitdiff
|
tree
2018-01-10
Mark
Ab
r
aha
m
Add releas
e
notes to
s
ource
r
epo
commit
|
commitdiff
|
tree
2018-01-10
Ma
r
k
Abraham
Handle e
r
r
o
neous comm
a
nd line args better
commit
|
commitdiff
|
tree
2018-01-09
Mark Abraham
Dea
c
tiv
a
te au
t
os
e
lect of PME on GP
U
on
separ
a
te r
a
nk
commit
|
commitdiff
|
tree
2018-01-09
Mark Abraham
Cl
e
an up user guide fo
r
release
commit
|
commitdiff
|
tree
2018-01-09
Mark A
b
raham
M
e
rge branch release-2016 into re
l
e
a
se-
2
018
commit
|
commitdiff
|
tree
2018-01-05
Mark Abrah
a
m
R
e
move FindCUDA from source tarball
commit
|
commitdiff
|
tree
2018-01-04
Ma
r
k
A
brah
a
m
Merge b
r
anch
r
e
lease-2018
commit
|
commitdiff
|
tree
2018-01-04
Mark
Abraham
Add te
s
t conf
i
g
o
f
G
P
U build on slave w
i
thout GPU
commit
|
commitdiff
|
tree
2018-01-03
Ma
r
k Ab
r
aham
A
d
d
c
ool quote
commit
|
commitdiff
|
tree
2018-01-03
M
ark Abraham
Fix
d
uplicate warning
commit
|
commitdiff
|
tree
2018-01-02
Mark Abraham
Fi
x
m
e
mbed by calling the
proper mtop finalizati
o
n
.
.
.
commit
|
commitdiff
|
tree
2017-12-30
Mark Ab
r
aham
First releas
e
can
d
idate for version 2018
commit
|
commitdiff
|
tree
2017-12-29
Mark
Abrah
a
m
Separate canDetec
t
Gpus an
d
findGpus
futh
e
r, and
f
ix
.
.
.
commit
|
commitdiff
|
tree
2017-12-27
Mark A
b
raham
S
ilence POWER8 compiler warning
s
commit
|
commitdiff
|
tree
2017-12-22
Mark
A
b
r
a
ham
Merg
e
branch releas
e
-2016
i
nto release-2018
commit
|
commitdiff
|
tree
2017-12-21
Ma
r
k Abraham
Me
r
g
e branch rele
a
se-5-1 into release-2016
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
B
ump minor version for
t
heoretical new
release
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Update double-precision te
s
t c
o
nfigu
r
ations
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Versio
n
5
.
1
.
5
commit
|
commitdiff
|
tree
2017-12-20
Mark Abraham
Use new defaultR
e
alTol
e
rance() to s
t
abili
s
e so
m
e tests
commit
|
commitdiff
|
tree
2017-12-20
Mark A
b
r
a
ham
Mer
g
e "Merge
b
r
a
nch release-2016 int
o
re
l
eas
e
-2018
.
.
.
commit
|
commitdiff
|
tree
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