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Eliminate raw force flags in do_force_lowlevel()
2019-09-10
Sz
i
l
á
rd P
á
l
l
Elim
i
n
a
t
e
raw force f
l
ag
s
in do
_
force_lowlevel
(
)
commit
|
commitdiff
|
tree
2019-09-10
Mark Abr
a
ham
Use mo
r
e RAI
I
s
emantics with t_commrec
commit
|
commitdiff
|
tree
2019-09-09
Berk H
e
ss
Ex
t
ract Carte
s
ian da
t
a from
D
DRan
k
Setup
commit
|
commitdiff
|
tree
2019-09-09
Christian Blau
Adding every N-steps option to de
n
sity
f
i
t
t
i
n
g
commit
|
commitdiff
|
tree
2019-09-04
Szilárd Páll
Centra
l
ize
more
MD/force shedule
f
la
g
s
commit
|
commitdiff
|
tree
2019-08-30
Christ
i
an Blau
Constru
c
ti
n
g local atom sets
f
or dens
i
ty fi
t
ting
commit
|
commitdiff
|
tree
2019-08-30
Mark Abraham
Fix b
u
i
l
d matrices
commit
|
commitdiff
|
tree
2019-08-29
Erik
L
indahl
Som
e
quotes
I
bumped into
last week
commit
|
commitdiff
|
tree
2019-08-28
Paul Bau
e
r
Have selections avail
a
ble for
m
drun
o
nly
commit
|
commitdiff
|
tree
2019-08-28
Mark Abraham
Im
p
r
oved usability of grompp by
r
ejecting
more inva
l
id
.
.
.
commit
|
commitdiff
|
tree
2019-08-26
Mark Ab
r
aham
Ma
k
e FEP
rerun tests cover the intended lambda space
commit
|
commitdiff
|
tree
2019-08-26
Mark Abrah
a
m
Fix pa
i
r
l
ist
b
u
g
commit
|
commitdiff
|
tree
2019-08-22
M
a
rk Abraham
Fix releas
e
matrix
commit
|
commitdiff
|
tree
2019-08-06
M
.
Eric Irrgang
Conver
t
tes
t
infrastructure
targe
t
s to sta
t
ic li
b
ra
r
y
.
.
.
commit
|
commitdiff
|
tree
2019-08-06
M
.
Er
i
c Ir
r
gang
Add libgromacs dependency to gpu_utilstest_cuda target
.
commit
|
commitdiff
|
tree
2019-08-06
Mark
Abr
a
ham
F
i
x
f
or MS
V
C
+
C
UDA
commit
|
commitdiff
|
tree
2019-08-02
Berk Hess
M
ade gmx disre wo
r
k
with non-consecu
t
ively labele
d
.
.
.
commit
|
commitdiff
|
tree
2019-08-02
Pasca
l
M
e
r
z
Introdu
c
e Simul
a
t
or
b
a
s
e class
commit
|
commitdiff
|
tree
2019-08-02
M
.
Er
i
c Irrgang
Reduce conflicts
with e
x
t
e
rnal googletest
f
iles
.
commit
|
commitdiff
|
tree
2019-07-23
M
ark
Abraham
U
pdate develo
p
er g
u
id
e
commit
|
commitdiff
|
tree
2019-07-11
Mark Abra
h
am
Fix p
r
e
-submit build matrix
a
nd descr
i
ptio
n
commit
|
commitdiff
|
tree
2019-07-11
K
ev
i
n
B
oyd
Use const
views in matrix d
e
terminant calculation
commit
|
commitdiff
|
tree
2019-07-11
Kevin Bo
y
d
Add trac
e
functionality to 3x
3
matrices
commit
|
commitdiff
|
tree
2019-07-11
Pascal Me
r
z
G
e
t
rid of clang-tidy warning
i
n
d
o
_md/re
r
un/mimic
commit
|
commitdiff
|
tree
2019-07-11
Pasca
l
Merz
Remove dependence o
f
comp
u
te_g
l
o
bals o
n
t_state
commit
|
commitdiff
|
tree
2019-07-11
Pascal Merz
Mak
e
relax
_
shell_flex
c
on independent of t_state
commit
|
commitdiff
|
tree
2019-07-11
K
evi
n
Boyd
Cle
a
n
u
p gmx sol
v
ate
commit
|
commitdiff
|
tree
2019-07-10
Kevi
n
Boyd
Ad
d
implicit conversion
of mdspan-
c
ontaining types
.
.
.
commit
|
commitdiff
|
tree
2019-07-10
M
.
Eric Irrg
a
ng
gm
x
api Py
t
hon package docu
m
e
n
tati
o
n layout
.
commit
|
commitdiff
|
tree
2019-07-09
Paul Bauer
Fi
x
l
i
nk
t
o acpype rep
o
sitory
commit
|
commitdiff
|
tree
2019-07-09
Paul Bauer
F
ix postsubmit
commit
|
commitdiff
|
tree
2019-07-08
P
aul Bauer
Fix issues foun
d
by clang-
t
idy
7
commit
|
commitdiff
|
tree
2019-07-08
Mark A
b
raha
m
Fi
x
h
w
loc and s
p
hinx detection
commit
|
commitdiff
|
tree
2019-07-08
Mark
Ab
r
aham
Test specific hwloc
v
e
r
sions
commit
|
commitdiff
|
tree
2019-07-05
Mark Abraham
I
mprove tests
of index block construction
commit
|
commitdiff
|
tree
2019-07-04
Mark Ab
r
aham
Fix clang-tidy-
7
iss
u
e
s
commit
|
commitdiff
|
tree
2019-07-02
Kevin
B
oyd
Add mdspan bas
i
c eleme
n
twise math
commit
|
commitdiff
|
tree
2019-07-02
M
.
Eric Irrgang
Update gmxapi test fixtures
.
commit
|
commitdiff
|
tree
2019-07-02
Paul Bauer
Fix bug in g
m
x xpm2ps
commit
|
commitdiff
|
tree
2019-06-27
S
zilárd Páll
Remove already resolved post-s
u
b
mi
t
ma
t
rix TODO
commit
|
commitdiff
|
tree
2019-06-24
S
z
il
á
rd
P
áll
Only use AVX
5
12 in ow
n
-
FFTW
if GROM
A
C
S
als
o
u
s
es it
commit
|
commitdiff
|
tree
2019-06-24
Pasc
a
l
M
erz
Make global topol
o
gy constan
t
in trajectory writing
commit
|
commitdiff
|
tree
2019-06-14
Paul Bauer
Pr
e
pa
r
e for 2019
.
4
commit
|
commitdiff
|
tree
2019-06-14
Paul Bauer
V
e
rsion 2019
.
3
commit
|
commitdiff
|
tree
2019-06-14
Paul Bauer
Merg
e
b
ranch release-2018 into release
-
2019
commit
|
commitdiff
|
tree
2019-06-12
Paul Bauer
Fix qsort not b
e
ing d
e
f
i
ned
on A
p
ple Clan
g
commit
|
commitdiff
|
tree
2019-06-11
Paul
B
auer
Extend inf
o
rmation for gm
x
cpp syntax error
.
commit
|
commitdiff
|
tree
2019-05-29
P
a
ul Bauer
Version 2018
.
7
commit
|
commitdiff
|
tree
2019-05-27
Berk Hess
Work
a
round gcc
7 avx512 bug
commit
|
commitdiff
|
tree
2019-05-27
Paul
B
a
u
e
r
Add more
info for wr
o
n
g
l
i
ne end
i
ngs
commit
|
commitdiff
|
tree
2019-05-24
Pa
u
l Bauer
Fix membra
n
e embeddin
g
commit
|
commitdiff
|
tree
2019-05-23
Ma
r
k Abra
h
am
R
ev
e
rt "Fi
x
ed
dvdlambd
a
for SHAK
E
+ FE"
commit
|
commitdiff
|
tree
2019-05-23
Paul Bauer
Add ch
e
ck for allocating to
o
many i
n
t
eractio
n
s
commit
|
commitdiff
|
tree
2019-05-13
Artem
Z
h
mur
o
v
Clarify
the EnergyO
u
t
p
u
t I
commit
|
commitdiff
|
tree
2019-05-13
Paul
B
a
u
er
Pre
p
are
f
or 2018
.
7
commit
|
commitdiff
|
tree
2019-05-07
Mark Abraham
Prov
i
de better
h
elp
for using libc++
commit
|
commitdiff
|
tree
2019-05-06
Artem Zhmurov
Fixing mi
n
or memory issues in MDLib
commit
|
commitdiff
|
tree
2019-05-03
P
aul Bauer
Replace t
_
gr
p
s
w
ith std::vector
commit
|
commitdiff
|
tree
2019-05-02
P
a
u
l Bauer
Fix FPE in do_steep
commit
|
commitdiff
|
tree
2019-04-25
Szilárd Páll
Fix
clang
w
arning about N
U
LL use
commit
|
commitdiff
|
tree
2019-04-25
Szilárd
Páll
Av
o
id using
AtomLocality::Count as a valid valu
e
commit
|
commitdiff
|
tree
2019-04-25
Artem Zhmurov
I
m
provements for energy
o
u
tput t
e
st
.
commit
|
commitdiff
|
tree
2019-04-23
Mark A
b
raha
m
Upda
t
ed
c
l
ang -We
v
e
rything checks
to c
l
ang-7
commit
|
commitdiff
|
tree
2019-04-18
Paul Bauer
Update cl
a
n
g-tidy to che
c
k fo
r
dan
g
l
i
ng
r
efer
e
nces
commit
|
commitdiff
|
tree
2019-04-18
Berk Hess
Fix pdb-rela
t
ed issues
commit
|
commitdiff
|
tree
2019-04-17
Paul
Bauer
C
reate gm
x
::compat
:
:strin
g
_vi
e
w
commit
|
commitdiff
|
tree
2019-04-16
Paul B
a
uer
P
re
p
are fo
r
version 2019
.
3
commit
|
commitdiff
|
tree
2019-04-16
ej
j
ordan
Die with helpful
n
ote
i
n case of i
n
correc
t
input to
.
.
.
commit
|
commitdiff
|
tree
2019-04-16
Berk Hess
Make m
d
run -nsteps work again
.
commit
|
commitdiff
|
tree
2019-04-15
Berk Hess
Update 201
9
release no
t
es fo
r
issue
284
5
commit
|
commitdiff
|
tree
2019-04-15
Szi
l
árd Páll
Add user gu
i
de note on AVX51
2
t
hrot
t
le
in GPU runs
commit
|
commitdiff
|
tree
2019-04-15
Berk He
s
s
Disa
l
lo
w
pull ge
o
metry direction-periodic with A
W
H
commit
|
commitdiff
|
tree
2019-04-10
M
.
Eri
c
Irrgang
Use pybin
d
1
1 to make a minimal
C++
P
yth
o
n
extension
.
commit
|
commitdiff
|
tree
2019-04-09
Mark Abraham
F
ix
t
ypo in AV
X
5
1
2 detec
t
io
n
code
commit
|
commitdiff
|
tree
2019-04-03
Paul Bauer
Fix
post
s
u
bmit
commit
|
commitdiff
|
tree
2019-03-28
R
o
l
a
nd Schu
l
z
Fix
U
B
vector
u
s
age
commit
|
commitdiff
|
tree
2019-03-25
Mark Abra
h
a
m
Con
v
e
rt gmx dump
t
o module
commit
|
commitdiff
|
tree
2019-03-22
C
h
ristian Bla
u
de
n
sityfitting - ser
i
alizer for mrc
header data
.
commit
|
commitdiff
|
tree
2019-03-19
Berk
Hess
Reduce
d
e
pendencies of nbnx
n
_
a
t
om
d
at
a
_t
commit
|
commitdiff
|
tree
2019-03-12
Pau
l
Bauer
Fix formatting error
in user guide
r
eference
commit
|
commitdiff
|
tree
2019-03-05
Mark
Abraham
Make pdb
2
gmx tests run in Jenkins
commit
|
commitdiff
|
tree
2019-03-05
Berk
H
e
ss
Fix post-submit
w
arn
i
ngs
commit
|
commitdiff
|
tree
2019-03-04
Paul Baue
r
Merge "
M
erge br
a
nch release-2019"
commit
|
commitdiff
|
tree
2019-03-01
Jukka
M
a
att
a
M
a
k
e OpenCL dummyKerne
l
to require a input param
e
ter
commit
|
commitdiff
|
tree
2019-02-26
P
ras
h
anth Kanduri
Mov
i
ng
f
inish_run(
.
.
.
) to
r
u
n
ner
.
cpp
commit
|
commitdiff
|
tree
2019-02-21
Berk Hess
Move free-e
n
ergy ke
r
n
e
l
d
ispatch into nbnxm mod
u
le
commit
|
commitdiff
|
tree
2019-02-20
Paul Bauer
M
e
rge "M
e
rge bra
n
ch 'r
e
lease-20
1
9'
into maste
r
"
commit
|
commitdiff
|
tree
2019-02-20
Be
r
k Hess
R
efact
o
r
D
LB region handling
commit
|
commitdiff
|
tree
2019-02-20
P
aul
B
au
e
r
Merge branch 'rel
e
ase-2019' i
n
to master
commit
|
commitdiff
|
tree
2019-02-20
Pa
u
l Ba
u
er
V
e
rsion 2018
.
6
commit
|
commitdiff
|
tree
2019-02-19
Paul Bauer
Prepare for 2
0
19
.
2
commit
|
commitdiff
|
tree
2019-02-19
Szilárd Páll
D
i
sabl
e
in
s
truction
f
u
s
ion on
Po
w
er8
commit
|
commitdiff
|
tree
2019-02-19
Roland
S
chulz
Improve libstd++ handl
i
ng
commit
|
commitdiff
|
tree
2019-02-15
Paul Ba
u
er
Version 2019
.
1
commit
|
commitdiff
|
tree
2019-02-15
Mark Abr
a
ha
m
Improved
d
iagnostics when PME can
n
ot run on GPUs
commit
|
commitdiff
|
tree
2019-02-15
Berk
H
e
ss
Fi
x
m
a
s
s Delta H double counting
commit
|
commitdiff
|
tree
2019-02-15
Szilá
r
d Páll
Ex
t
end p
e
r
formance considerations o
n
bonded offload
commit
|
commitdiff
|
tree
2019-02-13
S
z
ilár
d
Páll
Mino
r
refactoring in mdr
u
nnner
commit
|
commitdiff
|
tree
2019-02-12
Szilárd
P
á
ll
Minor refacto
r
of gpuid
/
t
a
sk mapping parsi
n
g
commit
|
commitdiff
|
tree
2019-02-12
Paul Bauer
Refacto
r
spe
c
ial b
o
n
d
s
commit
|
commitdiff
|
tree
next