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Clarify data flow in GPU task assignment
2017-07-27
Szilárd
P
á
l
l
I
n
for
m
u
s
ers
about the en
d
of run
D
LB state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Pál
l
Add ARM_NEON_AS
I
MD post-submi
t
test
commit
|
commitdiff
|
tree
2017-06-21
S
z
ilárd
P
ál
l
Re-
e
nable
l
ost DD warning + mi
n
or code moderniza
t
ion
commit
|
commitdiff
|
tree
2017-06-20
Szilá
r
d P
á
ll
Re-enabl
e
accidentally lost DD warning
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Refactoring + clarifica
t
io
n
of D
L
B stat
e
handling
commit
|
commitdiff
|
tree
2017-06-15
Szilárd
P
áll
Allow dis
a
bling the explici
t
u
se of
CUDA te
x
tur
e
s
commit
|
commitdiff
|
tree
2017-06-07
S
zilárd Pál
l
Suppress
s
m
_
2x d
e
precatio
n
wa
r
n
ing
with
C
UDA
8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Páll
Add CUD
A
8
.
0 + SIMD pre-submit test
commit
|
commitdiff
|
tree
2017-06-02
Szilárd Páll
Add
A
R
M
_
N
EON po
s
t-submit te
s
t
commit
|
commitdiff
|
tree
2017-05-29
Szil
á
rd P
á
l
l
Quotes
a
re
c
ool
,
typo-free one
s
a
re
e
v
en "co
o
ler"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd P
á
ll
A
d
d
basic doxygen for the
Verlet nonbonde
d
module
commit
|
commitdiff
|
tree
2017-03-29
Szilárd
Páll
Refactor CUDA kernel use of table
s
commit
|
commitdiff
|
tree
2017-03-29
Szilárd P
á
ll
Add CUDA
u
t
il function
for constant loads
commit
|
commitdiff
|
tree
2017-03-25
Szil
á
rd Páll
Conditional
tweak in
t
h
e
n
on
b
onded GPU
kernels
commit
|
commitdiff
|
tree
2017-03-17
Szilárd Pál
l
Allow bypassing OpenCL
d
evice
compatibility check
commit
|
commitdiff
|
tree
2017-03-16
Szilá
r
d Páll
Pri
n
t code of unknow
n
Ope
n
CL error
commit
|
commitdiff
|
tree
2017-03-09
Sz
i
lárd Páll
Fix mdrun h
a
nging upon ex
i
t with sep PME ranks
commit
|
commitdiff
|
tree
2017-01-24
Szilárd Páll
Remov
e
unused
arg
u
ment
in G
P
U kernels
commit
|
commitdiff
|
tree
2016-12-09
Szilá
r
d Páll
Tur
n
off hwloc support whe
n
static lib found
commit
|
commitdiff
|
tree
2016-11-17
Szilárd Pá
l
l
Corr
e
ct ke
r
nel
l
a
u
nch bounds
for C
U
DA sm_6
0
commit
|
commitdiff
|
tree
2016-11-01
S
zi
l
árd
Páll
Merge "Merge br
a
nch
releas
e
-
2
01
6
"
commit
|
commitdiff
|
tree
2016-10-28
Szilárd
Pál
l
G
PU-rel
a
te
d
additions to th
e
i
n
stall/user guide
commit
|
commitdiff
|
tree
2016-10-27
Szil
á
r
d
P
á
l
l
Make
-cl-fast-
r
ela
x
e
d
-
math default
commit
|
commitdiff
|
tree
2016-10-26
Szilárd Páll
Add GMX
_
DISABL
E
_GPU_TIMING env var
commit
|
commitdiff
|
tree
2016-10-09
Szilárd Páll
C
or
r
ect kerne
l
laun
c
h
b
o
u
n
ds fo
r
CUDA sm_6
0
commit
|
commitdiff
|
tree
2016-08-27
Szilárd
P
áll
Mak
e
ASAN/
T
S
AN/MSAN
b
uild
t
ypes easier to
discover
commit
|
commitdiff
|
tree
2016-07-08
S
z
ilárd Páll
Add P
D
F metadata
to
the
m
anual
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
User
guide clarific
a
ti
o
ns
commit
|
commitdiff
|
tree
2016-07-07
Sz
i
lárd Páll
Add
u
ser gui
d
e info on C
U
DA appl
i
cation clocks
commit
|
commitdiff
|
tree
2016-07-05
Sz
i
l
árd Páll
Doc
u
ment GMX_GPU_APPLICATIO
N
_CLOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd Páll
Disable
NVID
I
A
J
I
T cache with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
Szil
á
r
d
Páll
Fix CUDA
b
uild with multiple
compilation units
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Pá
l
l
A
dd sup
p
ort
f
or CUDA CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szil
á
rd Páll
Add env
.
var
.
to
enabl
e
OpenCL caching
commit
|
commitdiff
|
tree
2016-06-02
Szilá
r
d Páll
F
ix OpenCL binary cache
file name
g
e
neration
commit
|
commitdiff
|
tree
2016-05-05
Szil
á
rd Pál
l
Remo
v
e
CUDA
h
ost compile
r
c
onsis
t
ency c
h
ecks
commit
|
commitdiff
|
tree
2016-04-28
Szilárd Páll
Workar
o
und for gcc f
a
lse posit
i
ve warning
commit
|
commitdiff
|
tree
2016-04-27
S
zilár
d
Páll
Fix
multip
l
e MPI
ranks per n
o
de with
OpenCL
commit
|
commitdiff
|
tree
2016-04-26
Szilárd Páll
Fix
OpenC
L
assertion
commit
|
commitdiff
|
tree
2016-04-19
Szilárd Páll
M
ove
o
ut CUDA profiler triggers from
N
B
NXN
commit
|
commitdiff
|
tree
2016-04-13
Szilárd Páll
S
p
ell
i
ng fixes
commit
|
commitdiff
|
tree
2016-04-13
Szilárd Páll
Do n
o
t cr
e
ate e
m
pty man/man7
directory
commit
|
commitdiff
|
tree
2016-04-04
Szilárd Páll
M
a
rk mo
r
e
v
a
ri
a
bles as advanced
commit
|
commitdiff
|
tree
2016-03-31
Szilárd
Páll
refactor C
U
DA texture-based tab
l
e initiali
z
ation
commit
|
commitdiff
|
tree
2016-03-31
Szilárd Páll
Fix mult
i
pl
e
tMPI
r
anks per Ope
n
CL device
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
LJ combination rul
e
ke
r
nels
for
OpenCL
commit
|
commitdiff
|
tree
2016-03-30
Szilá
r
d Páll
R
e-e
n
able i-atom type local mem pref
e
tch in O
p
e
nCL
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
Describe AMD
APPSDK 3
.
0 issues
in
the guide
commit
|
commitdiff
|
tree
2016-03-17
Szilár
d
Páll
Fi
x
ed OpenCL e
/
fs
h
ift c
l
ear kern
e
l f
i
rst invocation
commit
|
commitdiff
|
tree
2016-02-26
Szilárd Pá
l
l
Fix leftover l
o
ad(
)
c
alls in the simd util head
e
rs
commit
|
commitdiff
|
tree
2016-02-19
Szilárd P
á
ll
F
i
x
O
penCL table interpolations of E
w
ald correcti
o
n
commit
|
commitdiff
|
tree
2016-02-17
Szilárd Páll
reintro
d
u
c
e supe
r
cl interaction
mask cons
t
ant
commit
|
commitdiff
|
tree
2016-02-17
S
z
i
lárd
Páll
change
m
acro
s
t
o
co
n
stants in
G
P
U
code
commit
|
commitdiff
|
tree
2016-02-15
S
z
i
l
árd Páll
Allow
G
M
X_NB_MIN_CI=0 to b
e
p
a
ssed
commit
|
commitdiff
|
tree
2016-02-11
Szilár
d
Páll
Re-enable LJ-PME + Lorentz-
B
e
r
thelot on GPU
s
commit
|
commitdiff
|
tree
2016-02-08
Szilár
d
Páll
H
a
nd
l
e
u
niformly GMX_OCL_N
O
GENCAC
H
E
commit
|
commitdiff
|
tree
2016-01-26
Szilárd
P
áll
GPU c
o
de reorgan
i
zation a
n
d tweaks
commit
|
commitdiff
|
tree
2016-01-20
Szil
á
rd
Páll
Merg
e
remote-
t
racking bra
n
c
h 'origin/release-5-1'
i
nto
.
.
.
commit
|
commitdiff
|
tree
2016-01-09
Szilárd Páll
split NBNXN
C
U
D
A
k
er
n
e
ls
i
n
to f
o
ur compilation uni
t
s
commit
|
commitdiff
|
tree
2015-10-15
Szilárd Páll
Ad
d
CUDA
n
v
cc >=7
.
0 support
commit
|
commitdiff
|
tree
2015-10-15
S
zilárd Páll
Corre
c
t CUDA version
compar
i
so
n
s
commit
|
commitdiff
|
tree
2015-05-06
Szil
á
rd Páll
Merge "Merge rele
a
se-4-6 into
release-5-0"
in
t
o rele
a
se
-
5-0
commit
|
commitdiff
|
tree
2015-04-21
Szilárd Páll
Allow
m
anually setting targe
t
GPU archi
t
ectures
commit
|
commitdiff
|
tree
2015-04-17
Szil
á
rd Páll
define CUDA version
and texobj support in confi
g
.
h
commit
|
commitdiff
|
tree
2014-11-29
S
z
ilárd
P
áll
Add ke
r
nel and compiler suport for CC 3
.
7 devices
commit
|
commitdiff
|
tree
2014-11-17
Szilárd Páll
Allow in
c
r
e
asing CUDA thre
a
d block size
commit
|
commitdiff
|
tree
2014-11-17
Szilárd
Pá
l
l
Ad
d
CUDA compi
l
er su
p
p
o
r
t
f
o
r
CC 5
.
0
commit
|
commitdiff
|
tree
2014-11-14
Sz
i
lá
r
d Pál
l
Start n
v
prof profiling
a
t counter reset
commit
|
commitdiff
|
tree
2014-09-26
Szil
á
rd Páll
Fi
x
i
n
co
r
rect asserti
o
n
stat
e
ment
commit
|
commitdiff
|
tree
2014-09-09
Sz
i
lárd Páll
Fix malformed C
U
DA version
macr
o
che
c
k
commit
|
commitdiff
|
tree
2014-06-01
Szi
l
árd Páll
Ad
d
q
u
ot
e
on the kT-kj/mol conversion factor
commit
|
commitdiff
|
tree
2014-03-11
Szilárd
P
áll
Bump r
e
quired CUD
A
version to 4
.
0
commit
|
commitdiff
|
tree
2014-01-28
Szilárd
Pál
l
clarifie
d
OpenMP-re
l
ated t
h
ings in m
d
ru
n
help/man
commit
|
commitdiff
|
tree
2013-11-19
Szilárd Páll
Fix DD
load ba
l
ancing bug with GPU sharing
commit
|
commitdiff
|
tree
2013-05-30
Szilá
r
d Páll
fix un
n
ecessary sw
i
tc
h
to polling G
P
U wait
commit
|
commitdiff
|
tree
2013-02-10
S
z
il
á
rd Páll
use legacy
C
UDA
n
on-b
o
n
ded ker
n
e
ls only
o
n Fermi
commit
|
commitdiff
|
tree
2013-01-18
S
z
ilá
r
d Pál
l
fix OpenMP detection on M
a
c OS broken by a6fee0b
commit
|
commitdiff
|
tree
2013-01-17
Szilá
r
d Páll
adde
d
missing cleanup of
s
ome nbnxn_cuda data
commit
|
commitdiff
|
tree
2013-01-17
Szi
l
árd
P
áll
Merge changes I93
0
b316c,Iea4283e0,I103648f8 into release-4-
6
commit
|
commitdiff
|
tree
2013-01-17
Szilá
r
d
Páll
use t
h
e compiler version pro
v
ided by
CMake >=2
.
8
.
9
commit
|
commitdiff
|
tree
2013-01-17
Szi
l
árd Páll
note the
r
eason for aut
o
-
d
isab
l
ing GPU support in CMake
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
cla
r
i
fy
w
ording
of GPU dri
v
er
-
relate
d
notes
commit
|
commitdiff
|
tree
2013-01-15
Szilárd Páll
disable Ope
n
MP wi
t
h all O
S
X gcc
4
.
2
-
based c
o
mpilers
commit
|
commitdiff
|
tree
2012-12-19
Szilár
d
Pál
l
Me
r
ge "Avoid using u
n
d
e
f
i
ned
C
Make va
r
i
a
bles" into
.
.
.
commit
|
commitdiff
|
tree
2012-12-19
S
z
ilárd Páll
Merge "Removed orphan fi
l
e" into rele
a
se-4
-
6
commit
|
commitdiff
|
tree
2012-12-17
Szilárd Páll
Merge "r
e
duced PLINCS comm
u
nicati
o
n w
i
th H-bo
n
d
constrai
n
t
s
.
.
.
commit
|
commitdiff
|
tree
2012-11-28
S
zilárd Páll
Merge
c
hanges I
9
b865c4c,I
b
709
2
90e int
o
r
elease-4-
6
commit
|
commitdiff
|
tree
2012-11-23
Szilárd Páll
Merge "Up
d
a
tes
t
o CMake treatment
o
f
OpenMP
"
i
n
t
o release-4-6
commit
|
commitdiff
|
tree
2012-10-25
S
z
ilárd P
á
ll
fix fals
e
positive gcc 4
.
7 warning in li
b
x
drf
commit
|
commitdiff
|
tree
2012-10-24
Szil
á
rd Páll
enable
G
MX_
P
RE
F
ER_
S
TATIC
_
LIBS CMake
o
p
t
i
o
n
o
n Mac OS X
commit
|
commitdiff
|
tree
2012-07-03
S
z
ilárd P
á
l
l
M
e
rge "Minor formatting and
c
onsistency cha
n
ges to
.
.
.
commit
|
commitdiff
|
tree
2012-05-25
Szilárd P
á
l
l
Mer
g
e
"Fix Clang 3
.
1
compil
e
e
rror"
commit
|
commitdiff
|
tree
2012-04-26
S
zilárd Pál
l
Merge
"fixed initial COM
motion
r
e
m
ova
l
w
i
th
m
u
l
ti
p
l
e
.
.
.
commit
|
commitdiff
|
tree
2012-02-11
Szi
l
árd Pál
l
Merge chan
g
es If0c2f9d9,Ic2a8
a
d82
into re
l
e
ase-4-5
.
.
.
commit
|
commitdiff
|
tree
2012-02-02
Szilárd
Páll
Me
r
g
e
"Append
a
ll
I
CC Perf
o
r
man
c
e
flags only t
o
Release
.
.
.
commit
|
commitdiff
|
tree
2012-02-02
Szilárd Pál
l
Mer
g
e "Merges in th
r
eading b
r
anch as one
squa
s
h
ed c
o
mmit
.
.
.
commit
|
commitdiff
|
tree
2011-10-06
S
z
i
lárd Páll
Merge "Remov
e
d duplicate
CMake functionality"
i
nto
.
.
.
commit
|
commitdiff
|
tree