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Remove already resolved post-submit matrix TODO
2019-06-27
Szilárd
Pál
l
Remove alrea
d
y resolv
e
d post-submit m
a
trix TODO
commit
|
commitdiff
|
tree
2019-06-24
Szilárd Páll
O
nly use AVX512 in own-FFTW if GROMAC
S
also uses it
commit
|
commitdiff
|
tree
2019-05-29
Szilárd P
á
l
l
Te
m
plate
x
buffer ops call on whether GPU
is used
commit
|
commitdiff
|
tree
2019-05-23
S
zilárd P
á
ll
Fix mulit
p
le link refs in dev-manual
commit
|
commitdiff
|
tree
2019-05-20
Szilárd Pá
l
l
Im
p
rove
X buffer
o
ps
k
ernel
commit
|
commitdiff
|
tree
2019-04-25
Szil
á
rd Páll
Fix clang warning
a
bout NU
L
L use
commit
|
commitdiff
|
tree
2019-04-25
Sz
i
lár
d
Pál
l
Avoid using At
o
mLocal
i
ty::Count
as a valid
value
commit
|
commitdiff
|
tree
2019-04-24
Szilárd Páll
Fix CUDA fallback shm
e
m
gather reduction
commit
|
commitdiff
|
tree
2019-04-18
Szi
l
á
rd Páll
Fix warnings & con
s
olidate de
c
laratio
n
s
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
Move functions operatin
g
on ene
r
data out of forc
e
.
cpp
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
Remov
e
"
coarse load
balancing vars" from fo
r
cerec
commit
|
commitdiff
|
tree
2019-04-16
Szilárd Páll
G
r
oup sche
m
e related
c
leanup
commit
|
commitdiff
|
tree
2019-04-16
S
z
ilárd Pál
l
Remove Gro
u
p scheme nei
g
hbor search w
r
apper
commit
|
commitdiff
|
tree
2019-04-05
Sz
i
lárd Páll
R
evert "
T
e
mpo
r
arily d
i
sable ARM HPC compiler
in post
.
.
.
commit
|
commitdiff
|
tree
2019-04-02
Szilár
d
Páll
Tempo
r
aril
y
d
isable A
R
M HPC compiler i
n
post
-
su
b
m
it
commit
|
commitdiff
|
tree
2019-03-26
S
zilárd Pál
l
Skip PBC calc
u
latio
n
when there are
n
o listed f
o
rces
commit
|
commitdiff
|
tree
2019-03-26
Szilárd Páll
do_force_cutsVERLET clea
n
up
commit
|
commitdiff
|
tree
2019-03-21
Szilá
r
d Páll
Reo
r
der
P
B
C setup i
n
d
o
_force_
l
o
w
l
e
vel
commit
|
commitdiff
|
tree
2019-03-13
Szilárd
Páll
Reorganize search-time code in do_force_cutsVERLET
commit
|
commitdiff
|
tree
2019-03-13
Szilárd Pál
l
Add h
a
ve
G
puBondedWork flag to PpFo
r
ceWorkload
commit
|
commitdiff
|
tree
2019-03-13
Szi
l
árd Pá
l
l
St
a
rt
modu
l
arizing force
w
orkload setu
p
commit
|
commitdiff
|
tree
2019-03-02
Sz
i
lárd Pál
l
Encap
s
ula
t
e force output setup in do_force_*
commit
|
commitdiff
|
tree
2019-03-01
Szilárd Páll
Clarify force
bu
f
fer setup co
d
e
in do_force
commit
|
commitdiff
|
tree
2019-02-17
Szilárd Páll
Improve GPU
target compatibi
l
ity e
r
r
o
r message
commit
|
commitdiff
|
tree
2019-02-15
Szilárd Páll
Extend GpuEventSynchronizer to allow on-device sync
commit
|
commitdiff
|
tree
2019-02-15
S
z
ilárd
P
á
l
l
Extend perfo
r
mance considerations on
b
onded offl
o
ad
commit
|
commitdiff
|
tree
2019-02-13
Szilárd Pá
l
l
D
isable instruction fusion o
n
Pow
e
r8
commit
|
commitdiff
|
tree
2019-02-13
S
z
ilá
r
d
Páll
Minor refactoring
in m
d
runnne
r
commit
|
commitdiff
|
tree
2019-02-12
Szilárd P
á
l
l
Minor
r
efactor of
g
puid / t
a
s
k mapping
p
a
r
sing
commit
|
commitdiff
|
tree
2019-02-07
Szil
á
rd Páll
Requi
r
e a 64-bit pla
t
form for OpenCL
commit
|
commitdiff
|
tree
2019-01-30
Szilárd Páll
Fix double-in
c
remen
t
of GPU NB laun
c
h subcounter
commit
|
commitdiff
|
tree
2019-01-21
S
zilárd Páll
Add CUD
A
C
C
7
.
5
(
Tur
i
ng) suppor
t
with
nvcc
commit
|
commitdiff
|
tree
2019-01-04
S
z
ilárd
Páll
Fix forma
t
ting warning
commit
|
commitdiff
|
tree
2019-01-02
Szilárd P
á
ll
Fix
c
la
n
g 6 w
a
rning
commit
|
commitdiff
|
tree
2019-01-02
Szilárd Páll
Do not whitelist
the use of OpenCL 1
.
1 A
P
I
commit
|
commitdiff
|
tree
2018-12-31
Szilárd Páll
Fix
release notes
typo
commit
|
commitdiff
|
tree
2018-12-31
Szilárd Pá
l
l
Add
C
UDA CC 7
.
5 (Tur
i
ng) s
u
p
port with
nvcc
commit
|
commitdiff
|
tree
2018-12-27
Sz
i
lá
r
d Páll
Use std::swap
i
n LINCS
commit
|
commitdiff
|
tree
2018-12-22
Szilárd Páll
Runtime check of d
e
vic
e
Op
e
nCL support
commit
|
commitdiff
|
tree
2018-12-21
Szil
á
rd
P
á
l
l
Make jenkins own-f
f
tw verify u
s
e
l
ocal tarball
commit
|
commitdiff
|
tree
2018-12-20
S
zilárd Pál
l
F
i
x CUDA compiled t
a
rget-device compatibility
c
h
ec
k
commit
|
commitdiff
|
tree
2018-12-20
Szilárd Páll
Co
r
rect CUDA c
o
mp
a
tibility ch
e
ck
commit
|
commitdiff
|
tree
2018-12-20
Szilá
r
d Pál
l
Merge "Me
r
g
e
b
ranc
h
relea
s
e-2018 into rel
e
ase-2019
.
.
.
commit
|
commitdiff
|
tree
2018-12-18
S
z
ilárd P
á
ll
Merge r
e
lease-
2
019 branch
i
nt
o
m
aste
r
commit
|
commitdiff
|
tree
2018-12-17
Szilárd
P
á
ll
F
i
x GMX
_
B
UIL
D
_
OWN_FF
T
W_URL CMake
c
ache entry type
commit
|
commitdiff
|
tree
2018-12-14
Szilárd Páll
Enable AR
M
P
L
in the armclang build
commit
|
commitdiff
|
tree
2018-12-13
Szilárd Pá
l
l
Avoid spurious timi
n
g in
bonded GPU launch
s
ubco
u
nter
commit
|
commitdiff
|
tree
2018-12-13
Szilárd Páll
Docum
e
nt the FP exception in
cuFF
T
7
.
0
commit
|
commitdiff
|
tree
2018-12-12
Szilárd Páll
Improve DLB re
p
ort/no
t
e
commit
|
commitdiff
|
tree
2018-12-11
Szilárd
P
á
ll
Tweak th
e
bonded GPU energy copy/wait o
p
era
t
ions
commit
|
commitdiff
|
tree
2018-12-06
Szilárd Páll
A
dd Bonded GPU l
a
unch overhead cycle subcounter
commit
|
commitdiff
|
tree
2018-12-06
Szilárd Páll
Swap the order of GPU bond
e
d and
nonbonded launch
commit
|
commitdiff
|
tree
2018-12-06
Szilárd P
á
ll
Fix conditional in nonloca
l
n
bnxn GP
U
work skippin
g
commit
|
commitdiff
|
tree
2018-12-06
Szilárd Páll
Split nbnxn in
p
ut cop
y
and kernel launch
commit
|
commitdiff
|
tree
2018-12-05
S
zilárd Páll
Correct thr
e
ad count in th
e
P
M
E
GPU red
u
ction
commit
|
commitdiff
|
tree
2018-11-27
Sz
i
lá
r
d Páll
Add ARMPL support to admin script
commit
|
commitdiff
|
tree
2018-11-27
Szilárd
P
áll
Add t
w
eaks to support ARMPL for FFTs
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
Re-enable the armclang post-submit build
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
Eliminat
e
m
acro tha
t
expan
d
s
t
o
v
ari
a
ble in PME GPU
commit
|
commitdiff
|
tree
2018-11-07
Szilárd Páll
Ensur
e
min
i
mum exec
w
idth of the PME OpenCL kernels
commit
|
commitdiff
|
tree
2018-10-14
S
zilá
r
d Páll
Fix more clang-
6
w
arnings in CUDA
code
commit
|
commitdiff
|
tree
2018-10-14
Szilárd
P
áll
Mode
r
niz
e
OpenC
L
me
m
ory a
l
loc
a
tion
flags
commit
|
commitdiff
|
tree
2018-10-10
S
z
ilárd
P
áll
S
w
ap custom OpenCL memset kernel
f
or clEnque
u
eF
i
llBuf
f
er
commit
|
commitdiff
|
tree
2018-10-09
S
z
ilárd Pál
l
U
p
date regressiontest ref to downloa
d
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Páll
T
weak FindFFTW API checks
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Páll
Fix clang-6
w
arn
i
ngs
commit
|
commitdiff
|
tree
2018-10-08
Szilárd Pá
l
l
R
eplace some NULL with nullptr
i
n
CUD
A
code
commit
|
commitdiff
|
tree
2018-10-07
Szi
l
á
r
d
Páll
U
s
e new GPU slave
f
o
r
A
MD OpenCL verify runs
commit
|
commitdiff
|
tree
2018-10-05
Szilárd Páll
Upd
a
te test matrices with new
G
PU specifiers
commit
|
commitdiff
|
tree
2018-09-29
Szil
á
rd Páll
Fix
c
ons
t
raints c
y
cl
e
co
u
nting
commit
|
commitdiff
|
tree
2018-09-21
Szilá
r
d Páll
B
ump t
e
st ti
m
eou
t
onl
y
for OpenCL integr
a
t
ion tests
commit
|
commitdiff
|
tree
2018-08-28
Szilárd P
á
ll
Quiet cmake
about
c
l
F
FT
n
o
t
found after first
r
u
n
commit
|
commitdiff
|
tree
2018-08-21
S
zilárd Pá
l
l
Request flushing d
e
norms to zero in
O
penCL
commit
|
commitdiff
|
tree
2018-08-20
Szilárd Páll
D
isable si
n
gle comp
i
la
t
i
on unit with CUD
A
9
.
0
commit
|
commitdiff
|
tree
2018-08-15
Szilárd Páll
Improv
e
GPU dete
c
tion sani
t
y check
e
rr
o
r message
commit
|
commitdiff
|
tree
2018-07-30
Szilárd
P
á
ll
Move out OpenCL dev
i
ce utils from vect
y
pe ops
commit
|
commitdiff
|
tree
2018-07-30
Szilárd Páll
Improve
the
rob
u
stness of the nvcc CMake check
commit
|
commitdiff
|
tree
2018-07-30
S
z
ilárd Pá
l
l
Fix nvcc host compil
e
r
che
c
k triggering
commit
|
commitdiff
|
tree
2018-07-29
Szilárd Páll
Correc
t
ions to the u
s
er guide mdrun p
e
rf
s
ect
i
on
commit
|
commitdiff
|
tree
2018-06-12
Szi
l
á
rd Páll
Also i
s
sue OM
P
_NUM_THREADS read
i
ng
n
o
t
e to the log
commit
|
commitdiff
|
tree
2018-06-04
Szilárd Páll
Fix timing o
f
clFFT
k
ernels
commit
|
commitdiff
|
tree
2018-05-29
S
z
ilárd P
á
ll
Swit
c
h to
C
UDA 9
.
2
+
gcc 7
commit
|
commitdiff
|
tree
2018-04-26
Szilárd
P
áll
Bump req
u
ired CUDA versi
o
n to
7
.
0
commit
|
commitdiff
|
tree
2018-04-23
Szilárd P
á
ll
Fix icc war
n
ing in post
-
submit
commit
|
commitdiff
|
tree
2018-04-21
Szilárd Pá
l
l
Add post-subm
i
t w
i
th ARM HP
C
T
oolch
a
in
commit
|
commitdiff
|
tree
2018-04-21
Szilárd Páll
T
w
eak P
M
E run mo
d
e checks
commit
|
commitdiff
|
tree
2018-04-20
Szilá
r
d
Páll
Minor fix f
o
r pre-submit matr
i
x docs
commit
|
commitdiff
|
tree
2018-04-19
Szilárd Páll
Move
the P
M
E GPU clearing to th
e
end of the s
t
ep
commit
|
commitdiff
|
tree
2018-04-16
S
zilárd Pá
l
l
Add post-
s
u
b
mit
t
est with
h
wloc off
commit
|
commitdiff
|
tree
2018-04-13
Szilárd
P
áll
Use trival
u
e option
for GMX_HWLOC
commit
|
commitdiff
|
tree
2018-04-05
Szilárd
P
ál
l
Ref
a
c
tor cj
prel
o
ad i
n
t
he nonbonded OpenCL
k
ernels
commit
|
commitdiff
|
tree
2018-03-29
Szilárd
Páll
Tw
e
ak
/
enable icc 18
p
o
st-submit test
s
commit
|
commitdiff
|
tree
2018-03-29
Szilárd P
á
ll
Switch CUDA 9
.
0/
g
cc 5 te
s
t to C
U
D
A
9
.
1/
g
c
c
6
commit
|
commitdiff
|
tree
2018-03-13
Szi
l
árd Páll
Require O
p
enCL 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Sz
i
lárd Páll
Fix clang 6
.
0
with CUDA
9
.
0
commit
|
commitdiff
|
tree
2018-03-12
S
zilárd
P
áll
Avoid
i
cc-specific -march=c
o
re
-
avx2 flag with gcc/clang
commit
|
commitdiff
|
tree
2018-03-06
S
zilár
d
Páll
Extend "Finding out how
t
o r
u
n mdrun
b
etter" section
commit
|
commitdiff
|
tree
2018-03-05
Szilárd P
á
ll
Add to the co
n
t
r
i
b
utor sectio
n
commit
|
commitdiff
|
tree
2018-02-21
Szi
l
ár
d
Páll
S
witch pre-submit CUDA 8
.
0
t
est to 9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Páll
A
void abo
r
ting mdrun whe
n
GP
U
sanity che
c
k
dete
c
ts
.
.
.
commit
|
commitdiff
|
tree
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