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Fix CUDA being quiet and mark all CUDA_* as advanced
2013-01-07
Roland Schu
l
z
Fi
x
C
U
DA bei
n
g
quiet and mark
all
C
UDA_* as ad
v
anced
commit
|
commitdiff
|
tree
2012-12-08
Ro
l
and Schulz
Fix c
o
mpilation with PG
I
commit
|
commitdiff
|
tree
2012-12-05
Roland S
c
hulz
R
e
move
TEST_T
M
PI
_
ATO
M
ICS_ONLY
commit
|
commitdiff
|
tree
2012-11-30
Szilard Pall
force
C
++ linking of the gpu_utils
commit
|
commitdiff
|
tree
2012-11-28
R
oland Schulz
Fi
x
:
pthread variables
were overwritten by gmx
M
anageGPU
commit
|
commitdiff
|
tree
2012-11-28
Roland
S
c
h
ulz
Fix CPACK_SOU
R
C
E
_
I
GNOR
E
_FILES
commit
|
commitdiff
|
tree
2012-11-28
Ro
l
and Schulz
Print error i
f
no threa
d
s
upp
o
r
t is
available
commit
|
commitdiff
|
tree
2012-11-27
Roland Schulz
Fix Wind
o
w-GPU build
commit
|
commitdiff
|
tree
2012-11-27
Roland Schulz
Remove CVS f
i
l
es
commit
|
commitdiff
|
tree
2012-11-27
Er
i
k Lindahl
N
o
nbonded group kerne
l
s for
256-bit
A
V
X
(Intel
C
P
U
s)
commit
|
commitdiff
|
tree
2012-11-27
Sande
r
Pronk
Added affinit
y
support
check, visibility macros
in
.
.
.
commit
|
commitdiff
|
tree
2012-11-26
R
oland Schulz
Merge rel
e
ase-4-5-patches
i
nto rel
e
ase-4-6
commit
|
commitdiff
|
tree
2012-11-24
Rolan
d
Schulz
Use stat for gmx_is_f
i
l
e
.
Fix get
_
l
i
b
d
ir with symlinks
.
commit
|
commitdiff
|
tree
2012-11-20
Roland
S
chulz
Fix CXX/C m
i
smat
c
h of fla
g
/macr
o
for gmxCFlags
commit
|
commitdiff
|
tree
2012-11-20
Roland Schulz
Merge
rel
e
ase-4-5-pa
t
ches
into release-4-6
commit
|
commitdiff
|
tree
2012-11-20
Roland Schulz
Fix CXX/C mismatch of flag/macro for gmxCFlags
commit
|
commitdiff
|
tree
2012-11-16
Roland Schulz
Removing
Z
n and Ar non-OPLS ato
m
t
y
pes
commit
|
commitdiff
|
tree
2012-11-16
Roland Schul
z
Removes u
n
use
d
files
commit
|
commitdiff
|
tree
2012-11-14
R
oland Schulz
F
indF
F
TW
:
Keep
checking pkg_config until fftw is f
o
und
commit
|
commitdiff
|
tree
2012-11-12
Ro
l
a
nd Schulz
Test that compiling and
l
inking of AVX wor
k
s
commit
|
commitdiff
|
tree
2012-11-11
Ro
l
and
Schulz
Fix FMA4 compile for GCC a
n
d
MSVC
commit
|
commitdiff
|
tree
2012-11-10
Roland Schulz
Fi
x
g_msd -
m
ol
commit
|
commitdiff
|
tree
2012-11-09
Roland Schulz
F
ix compo
n
ent for libcudart
commit
|
commitdiff
|
tree
2012-11-05
Rolan
d
Schulz
A
d
d
o
ption
to instal
l
l
i
b
cudar
t
commit
|
commitdiff
|
tree
2012-11-03
R
o
la
n
d Schulz
Merge release-4-5-patches into rel
e
ase-4-
6
commit
|
commitdiff
|
tree
2012-10-27
R
o
land Schulz
Set HAVE_FSEEKO c
o
ns
i
st
e
ntly i
n
one
p
lace
commit
|
commitdiff
|
tree
2012-10-23
R
oland Schu
l
z
Replace
spr
i
ntf w
i
t
h
s
nprintf
to make s
a
fe
commit
|
commitdiff
|
tree
2012-10-19
Rola
n
d Schulz
Fix large fi
l
e
support
commit
|
commitdiff
|
tree
2012-10-17
R
ola
n
d Schulz
F
ixed
P
ulp Fiction q
u
ote
commit
|
commitdiff
|
tree
2012-10-12
Rolan
d
Schulz
Fix
i
l
l
eg
a
l bar
r
ier
in worksharing
commit
|
commitdiff
|
tree
2012-10-10
Roland Schulz
Make Gromac
s
compile
w
it
h
out C++ compi
l
er
commit
|
commitdiff
|
tree
2012-10-06
Roland
Schulz
Fix incor
r
ect free
commit
|
commitdiff
|
tree
2012-10-01
Roland Schu
l
z
M
e
r
g
e release-4-5-patch
e
s i
n
t
o rele
a
se-4-6
commit
|
commitdiff
|
tree
2012-09-30
Roland Schulz
Fix problems found
b
y cppcheck
1
.
56
commit
|
commitdiff
|
tree
2012-09-13
R
oland Sch
u
lz
Backpo
r
t of md-vv rerun check from c7a8
2
654f2eb8
9
92
commit
|
commitdiff
|
tree
2012-09-12
Rol
a
nd Sc
h
ulz
Set valid bu
i
l
d information i
f
g
m
x_det
e
ctcpu
fa
i
ls
commit
|
commitdiff
|
tree
2012-09-06
Roland Schul
z
Fix illegal
c
a
l
l to
M
PI
w
ithout being
i
nitialized
commit
|
commitdiff
|
tree
2012-09-06
Roland
Schu
l
z
Don't fail lin
k
ing
i
f man pag
e
building fails
commit
|
commitdiff
|
tree
2012-09-05
Roland S
c
hulz
Check
t
h
at
gmx_dete
c
tcpu runs co
r
r
ectly
commit
|
commitdiff
|
tree
2012-09-03
Roland Sch
u
lz
Fix VM
D
plugins o
n
Windows
commit
|
commitdiff
|
tree
2012-09-02
Roland S
c
h
ulz
Fix stack error in
grompp
commit
|
commitdiff
|
tree
2012-08-30
R
ola
n
d Sc
h
ul
z
Fixes too many bac
k
up f
i
le
s
f
o
r
*
.
n
roff files
commit
|
commitdiff
|
tree
2012-08-16
Roland Schulz
Fi
x
coordinate is zero
check in gmxcheck
commit
|
commitdiff
|
tree
2012-08-05
Roland Schulz
Re
m
o
v
e s
h
are/t
u
t
o
r
commit
|
commitdiff
|
tree
2012-08-03
Ro
l
and
Schul
z
Fi
x
over
l
appi
n
g memcpy
commit
|
commitdiff
|
tree
2012-08-01
Roland Schul
z
Fix use afte
r
free memory error with adres
s
commit
|
commitdiff
|
tree
2012-07-29
Roland Sc
h
u
lz
F
i
x S
e
g
f
aul
t
s
in Genion
commit
|
commitdiff
|
tree
2012-07-24
Rola
n
d Schulz
F
i
x installa
t
ion rul
e
s for man pages: don't install
.
.
.
commit
|
commitdiff
|
tree
2012-07-24
Rol
a
nd Schulz
Add default root folder to cpack archives
commit
|
commitdiff
|
tree
2012-07-13
Rola
n
d Sc
h
u
l
z
Me
r
ge release-4
.
5-patch
e
s
in
t
o HEAD
commit
|
commitdiff
|
tree
2012-07-10
Roland Schulz
Adding
m
i
ssing entri
e
s i
n
programs
.
txt
commit
|
commitdiff
|
tree
2012-07-10
Roland Sch
u
lz
Use relative rpath to support rel
o
ca
t
able binary packages
commit
|
commitdiff
|
tree
2012-07-10
Rol
a
nd Schulz
Allo
w
usage of
relative instal
l
paths
commit
|
commitdiff
|
tree
2012-07-07
Roland S
c
hulz
A
utogenerate gromacs
.
7 from pr
o
grams
.
txt
commit
|
commitdiff
|
tree
2012-07-05
Roland Sc
h
ulz
Do
n
't r
e
ru
n
che
c
ks and be quiet 2nd time cma
k
e is run
commit
|
commitdiff
|
tree
2012-06-28
Roland
S
chulz
Allow
also FindMPI for cmake<2
.
8
.
5
commit
|
commitdiff
|
tree
2012-06-28
Roland Sc
h
u
lz
F
ix MPI buil
d
for M
P
I
l
ibrary without mpi wrapper
commit
|
commitdiff
|
tree
2012-06-26
Roland Schulz
Fix that re
r
unni
n
g cma
k
e giv
e
s the same result as 1st run
commit
|
commitdiff
|
tree
2012-06-24
Roland S
c
hulz
Fix
m
dp_o
p
t
f
orm
a
tting of expa
n
d
ed ensemble
commit
|
commitdiff
|
tree
2012-06-24
Rola
n
d
S
c
h
ul
z
Remo
v
e MPI de
f
ine for FAH
commit
|
commitdiff
|
tree
2012-06-01
Rol
a
nd Schulz
Merge rele
a
s
e-4-5-patches
i
n
to release-4-6
commit
|
commitdiff
|
tree
2012-06-01
Roland Schu
l
z
Repl
a
c
e
ou
r
fftpa
c
k version with Numpy's version
commit
|
commitdiff
|
tree
2012-05-27
R
o
la
n
d Schul
z
Fix
e
d
i
tconf real-b
o
ol misusage
commit
|
commitdiff
|
tree
2012-05-27
Roland
Schulz
F
i
x Cla
n
g 3
.
1
warni
n
g
commit
|
commitdiff
|
tree
2012-05-23
Ro
l
and Schulz
Fix
that sigaction m
a
sk wasn'
t
zer
o
ed
commit
|
commitdiff
|
tree
2012-05-23
Roland Schulz
Code cleanup to
a
v
oi
d
n
am
e
co
l
lisi
o
ns
commit
|
commitdiff
|
tree
2012-05-22
Roland Schul
z
Us
e
External BLAS/LAPACK by defa
u
lt
commit
|
commitdiff
|
tree
2012-05-18
R
ola
n
d Sch
u
lz
Rename BOOL to EBOO
L
commit
|
commitdiff
|
tree
2012-05-16
Roland Schulz
Fix
i
ng
m
ore
clang warning
s
commit
|
commitdiff
|
tree
2012-05-08
Ro
l
and Sc
h
ulz
F
i
x
ing
m
ore Clang warn
i
ngs
commit
|
commitdiff
|
tree
2012-05-01
Ro
l
and Schulz
Fix Win
d
o
w
s spe
c
ific
c
make
h
acks
commit
|
commitdiff
|
tree
2012-04-30
R
oland Schulz
F
ix gmx
d
ump error introdu
c
e
d
b
y
5
53d4b13
6
9
commit
|
commitdiff
|
tree
2012-04-29
Roland
S
chulz
D
i
sab
l
e
OpenMP for
l
lvm-
g
cc 4
.
2
.
x
commit
|
commitdiff
|
tree
2012-04-29
Ro
l
and Sch
u
l
z
Me
r
ge
release-4-5-
p
atches
into
release-
4
-
6
commit
|
commitdiff
|
tree
2012-04-29
Roland S
c
hulz
D
on't
e
nable
A
SM if no asm kernel is selec
t
ed
commit
|
commitdiff
|
tree
2012-04-29
R
o
land Schulz
Merge release-4-5-patches into release-4-6
commit
|
commitdiff
|
tree
2012-04-28
B
erk Hess
fixed P
M
E forces with FE, fixe
s
#929 intr
o
duced i
n
.
.
.
commit
|
commitdiff
|
tree
2012-04-28
Roland Sch
u
lz
Fix sren
e
w/
s
free_aligned mis
u
s
e
i
n
P
ME
commit
|
commitdiff
|
tree
2012-04-27
R
ola
n
d Schulz
Remove checks based on Generator
commit
|
commitdiff
|
tree
2012-04-27
Roland S
c
hulz
Fix for sigaction
commit
|
commitdiff
|
tree
2012-04-22
Roland Schulz
R
e
solv
i
n
g
a co
u
ple of clang analyzer warnings
commit
|
commitdiff
|
tree
2012-04-16
R
o
l
an
d
Schu
l
z
Resta
r
t
I
O o
p
e
ratio
n
s whe
n
in
t
er
r
upter
by sig
n
a
l
commit
|
commitdiff
|
tree
2012-04-11
Roland Sch
u
lz
Fix tha
t
direc
t
ory is not mistaken for bin
a
ry
commit
|
commitdiff
|
tree
2012-04-06
R
o
land
Schulz
Fi
x
d
omain decompositio
n
setup
for
>
46
k
c
o
res
commit
|
commitdiff
|
tree
2012-04-03
Roland Sc
h
ulz
Merge rem
o
te
-
t
r
ac
k
ing branch
'
g
e
rrit/release-4-
5
-
patches
.
.
.
commit
|
commitdiff
|
tree
2012-03-27
Roland Schulz
Resolvi
n
g cla
n
g
ana
l
y
zer warnings in anal
y
sis
commit
|
commitdiff
|
tree
2012-03-26
Roland
S
chulz
War
n
when a
v
alue is unused
commit
|
commitdiff
|
tree
2012-03-21
Roland Schulz
Remo
v
ing unused code
commit
|
commitdiff
|
tree
2012-03-16
Berk Hess
fixed
i
n
c
orre
c
t ta
b
le allocation
commit
|
commitdiff
|
tree
2012-03-16
Roland Schul
z
Merge
release-4-5
-
p
atch
e
s into
r
elease-4-6
commit
|
commitdiff
|
tree
2012-03-15
Roland Schulz
F
ix most errors
found by cppcheck
commit
|
commitdiff
|
tree
2012-03-10
Roland Sc
h
ulz
Ac
t
ivating mo
r
e GCC warn
i
ngs
commit
|
commitdiff
|
tree
2012-03-10
Roland Schulz
F
i
x
t
ypo in
Clang
CFlags
commit
|
commitdiff
|
tree
2012-03-04
Roland Schulz
M
i
nima
l
sup
p
o
rt for Clang
commit
|
commitdiff
|
tree
2012-02-23
R
ola
n
d Schulz
M
e
rge remote-tr
a
cking branch 'gerrit/releas
e
-4-5-patches
.
.
.
commit
|
commitdiff
|
tree
2012-02-21
Roland S
c
hu
l
z
U
se Git server (mir
r
or) to avoid fetching problems
commit
|
commitdiff
|
tree
2012-02-09
Szilard
P
all
ren
a
m
e
d
GMX_THREADS to GMX_THREAD_MP
I
commit
|
commitdiff
|
tree
2012-02-08
Roland Sch
u
lz
Merge r
e
mote-tracking branch 'gerr
i
t/r
e
le
a
se-4
-
5-patches
.
.
.
commit
|
commitdiff
|
tree
2012-02-05
Roland Schu
l
z
Fix ICC on
W
indows Build
commit
|
commitdiff
|
tree
2012-02-03
Roland Schulz
Merg
e
r
emote-tra
c
king
branc
h
'
g
errit/release-4-5-patches
.
.
.
commit
|
commitdiff
|
tree
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