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Fixed segfaults with empty selections.
2009-11-11
T
eemu M
u
rtola
F
ixe
d
segfau
l
t
s
w
ith
e
mpty
s
electio
n
s
.
commit
|
commitdiff
|
tree
2009-11-11
T
e
emu Murtola
More ge
n
er
a
l
select
i
on parser grammar
.
commit
|
commitdiff
|
tree
2009-11-10
Teemu Murtola
gmxcpp fixes (bug #3
6
0 plus other fi
x
es)
.
commit
|
commitdiff
|
tree
2009-11-10
Te
e
mu Murt
o
l
a
A
dded a gmxdump -p option to preprocess
topolo
g
y
.
commit
|
commitdiff
|
tree
2009-11-09
T
eemu
Murtol
a
S
ome simple memory leak
f
ixes
.
commit
|
commitdiff
|
tree
2009-11-09
Teemu
Murtola
Added a resin
d
selection key
w
o
rd
.
commit
|
commitdiff
|
tree
2009-11-06
Te
e
mu
M
u
r
tola
Selectio
n
mer
g
e
now works with
constant positions
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu Murt
o
l
a
A bi
t
mo
r
e modular s
e
l
e
c
t
ion positio
n
h
andling
.
commit
|
commitdiff
|
tree
2009-11-06
Teemu Murtola
Better g_ener
g
y -nmol be
h
a
vior (bug #
3
65
)
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu Murtola
More modular position han
d
ling
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu Murtola
More flexible selec
t
i
o
n
merging
.
commit
|
commitdiff
|
tree
2009-11-05
Teemu Murt
o
la
S
election
mer
g
e k
e
yword fixes
.
commit
|
commitdiff
|
tree
2009-11-05
Te
e
mu Mur
t
ola
Add
e
d a missing return in gmx_fio_get_file
_
md5(
)
.
commit
|
commitdiff
|
tree
2009-11-04
Teemu
M
u
r
t
o
la
Addit
i
onal sele
c
tion
k
eywords
(plus a
n
d merge)
.
commit
|
commitdiff
|
tree
2009-11-02
Teemu
M
urt
o
la
Improved
D
o
x
ygen docs for selection inter
n
als
.
commit
|
commitdiff
|
tree
2009-10-29
Teemu
M
urtola
Improved interactive selection i
n
put
.
commit
|
commitdiff
|
tree
2009-10-28
Te
e
m
u Murtola
Updated selecti
o
n d
o
cumen
t
ation
.
commit
|
commitdiff
|
tree
2009-10-27
Teem
u
Murtola
Selection parser cleanu
p
.
commit
|
commitdiff
|
tree
2009-10-26
Teemu Murtola
Analysis lib
.
ca
n
now analyze just a topol
o
gy
.
commit
|
commitdiff
|
tree
2009-10-26
Teemu Murt
o
la
F
i
x
ed
s
elections i
n
trod
u
c
e
d
i
n co
m
mi
t
82ecf01
.
.
.
commit
|
commitdiff
|
tree
2009-10-26
T
eemu Mu
r
tola
Fixed a segfault in
select
i
on lib
.
commit
|
commitdiff
|
tree
2009-10-21
Te
e
m
u
Murto
l
a
Fourier
dih
e
d
rals (di
h
.
t
y
pe
5) shoul
d
now work
.
commit
|
commitdiff
|
tree
2009-10-09
T
e
e
mu Murt
o
la
Implemented selections
l
ike "
o
ccupa
n
cy
0
.
5 to
1"
.
commit
|
commitdiff
|
tree
2009-10-09
Teem
u
Mur
t
ol
a
Mo
r
e flexible selecti
o
n parser
s
yntax
.
commit
|
commitdiff
|
tree
2009-10-08
T
e
e
m
u Murtol
a
Better e
r
ro
r
handli
n
g in
s
election parsing
.
commit
|
commitdiff
|
tree
2009-10-08
Teemu Mur
t
ol
a
R
e
organization of s
e
lectio
n
parser
.
commit
|
commitdiff
|
tree
2009-10-08
Teemu Mu
r
tola
Fix
e
d/
b
etter
sel
e
cti
o
n name initializat
i
on
.
commit
|
commitdiff
|
tree
2009-10-08
Teemu Murtola
Se
l
ectio
n
output to xvgr file
s
is now cleaner
.
commit
|
commitdiff
|
tree
2009-10-07
T
e
emu Murtola
Renamed INT to INTEG
E
R in selec
t
ion pa
r
ser
.
commit
|
commitdiff
|
tree
2009-10-07
Teemu Murtola
C
M
a
k
e
c
h
e
cks for regular expre
s
sion support
.
commit
|
commitdiff
|
tree
2009-10-07
T
eemu
M
ur
t
o
l
a
CMake buil
d
fo
r
selectio
n
library
.
commit
|
commitdiff
|
tree
2009-10-07
Te
e
mu
Murt
o
l
a
F
ixed so
m
e Windows b
u
ild i
s
sue
s
with selections
.
commit
|
commitdiff
|
tree
2009-10-06
Teemu
M
urtola
Autoc
o
nf checks for
r
egular expressio
n
support
.
commit
|
commitdiff
|
tree
2009-10-06
T
e
emu
M
u
rtola
D
o
n
't
u
se
P
OSIX fnma
t
ch() fo
r
p
a
ttern
ma
t
ch
i
ng
.
commit
|
commitdiff
|
tree
2009-10-05
Teemu Murtola
M
e
rge branch 'm
a
ster
'
of git@git
.
gromacs
.
org:g
r
omacs
commit
|
commitdiff
|
tree
2009-10-05
Teemu Murtola
Fi
x
ed
m
emory handling issues in selectio
n
s
.
commit
|
commitdiff
|
tree
2009-10-02
T
e
emu Mu
r
tola
Tr
i
m
e
x
tra
spac
e
f
r
om default sele
c
tio
n
names
.
commit
|
commitdiff
|
tree
2009-09-30
Teemu Murtola
Fix
e
d
a c
o
m
piler warning in
gmx_select
.
c
.
commit
|
commitdiff
|
tree
2009-09-29
Teemu Murtola
Ad
d
ed
a
n ifdef around isatty()
c
all
.
commit
|
commitdiff
|
tree
2009-09-29
T
eemu Murtola
L
i
mited deb
u
gging output for
l
arge selections
.
commit
|
commitdiff
|
tree
2009-09-29
T
e
emu Murtola
Default groups for sel
e
ctions fro
m
a
file
.
commit
|
commitdiff
|
tree
2009-09-25
Teemu Mur
t
ola
S
o
m
e
m
ore flexi
b
i
l
ity
i
n
boolea
n
sel
e
c
t
ion
flags
.
commit
|
commitdiff
|
tree
2009-09-25
T
e
emu Mu
r
tola
M
o
re flexi
b
le boole
a
n f
l
ags
i
n selecti
o
n keywords
.
commit
|
commitdiff
|
tree
2009-09-25
T
e
emu
Murtola
sca
n
ner
.
l now onl
y
cont
a
ins gramma
r
defi
n
itions
.
commit
|
commitdiff
|
tree
2009-09-24
Teemu Murtola
Some more cleanup in
the selecti
o
n parser
.
commit
|
commitdiff
|
tree
2009-09-24
Te
e
mu Murtola
Cl
e
an-up of se
l
e
c
tio
n
pars
e
r code
.
commit
|
commitdiff
|
tree
2009-09-24
Teemu Murt
o
la
Reorga
n
ized selection
parser code
.
commit
|
commitdiff
|
tree
2009-09-18
Tee
m
u Mur
t
ola
T
h
e
analysis to
o
l
temp
l
ate compiles again
.
commit
|
commitdiff
|
tree
2009-09-18
Teemu Murtola
Fix
e
d t
h
e
t
itle on
t
he Doxygen mai
n
page
.
commit
|
commitdiff
|
tree
2009-09-18
Teemu Mu
r
tola
I
m
pr
o
ved Doxygen pa
g
e struct
u
re
.
commit
|
commitdiff
|
tree
2009-09-18
Tee
m
u
M
urtola
Cleaned Doxygen
o
utput wi
t
h INTERNAL_DOCS=no
.
commit
|
commitdiff
|
tree
2009-09-17
Teemu Murtola
Unified Doxygen commen
t
s
in analysis library
.
commit
|
commitdiff
|
tree
2009-09-17
Tee
m
u Murtola
Added hel
p
texts for selection keywo
r
ds
.
commit
|
commitdiff
|
tree
2009-09-17
Teemu Murtola
Imp
r
ovements
i
n s
e
lection help (keywords by type
)
.
commit
|
commitdiff
|
tree
2009-09-16
Teem
u
Murtola
Fixed a memory
l
eak i
n
p
r
int_tt_formatt
e
d
(
)
.
commit
|
commitdiff
|
tree
2009-09-16
Teemu Murtola
Add
e
d help tex
t
s for selections
.
commit
|
commitdiff
|
tree
2009-09-16
Teemu Murtola
Fra
m
e
w
o
rk
f
o
r printing help for sele
c
tions
.
commit
|
commitdiff
|
tree
2009-09-14
Teemu Murtola
Fixe
d
an out
p
ut fi
l
e bug in traj
.
ana
l
ysis
l
ib
.
commit
|
commitdiff
|
tree
2009-09-14
Teemu Murt
o
la
More informative default
select
i
on na
m
es
.
commit
|
commitdiff
|
tree
2009-09-11
Teemu Murtola
Impleme
n
ted
a "same residue a
s
" selection me
t
hod
.
commit
|
commitdiff
|
tree
2009-09-11
Te
e
mu Murtola
F
i
xed a b
u
g in selecting one-atom resi
d
ues
.
commit
|
commitdiff
|
tree
2009-09-11
Teemu Murtola
More
control
o
ver residue out
p
ut of g
_
select
.
commit
|
commitdiff
|
tree
2009-09-10
Teemu
Murtola
Minor
s
election
f
ix (affects mindi
s
t
and wit
h
in)
.
commit
|
commitdiff
|
tree
2009-09-10
Teemu Murtola
Added very rudimentary suppor
t
f
o
r
D
ox
y
gen
.
commit
|
commitdiff
|
tree
2009-09-09
Tee
m
u Murtola
Added _gmx_sel_
p
refix to
all
F
lex/Bison symbols
.
commit
|
commitdiff
|
tree
2009-09-08
Teemu Murtola
T
r
aj
.
analysis st
r
ucture
no
w
passes oenv a
r
ound
.
commit
|
commitdiff
|
tree
2009-09-03
Teemu Murto
l
a
Fixed some
comm
e
nts to r
e
d
u
ce Doxygen
w
arnings
.
commit
|
commitdiff
|
tree
2009-09-03
Teemu Murtola
Selection tok
e
nizer is now reentrant
.
commit
|
commitdiff
|
tree
2009-09-03
Teemu
M
urtola
test
_
selec
t
ion now compi
l
es again
commit
|
commitdiff
|
tree
2009-08-07
Teemu Murt
o
la
Fixed
a
bug that mad
e
sele
c
tions
n
o
n-functio
n
a
l
commit
|
commitdiff
|
tree
2009-07-02
Te
e
mu Murto
l
a
Remove
d
stati
c
variab
l
es in s
e
lection
l
i
b
rar
y
.
commit
|
commitdiff
|
tree
2009-06-15
Teemu Murtola
More
m
o
d
ul
a
r memory han
d
l
i
ng of s
e
lec
t
ion value
s
.
commit
|
commitdiff
|
tree
2009-06-10
Teemu Murto
l
a
Me
r
ge bra
n
ch 'cha
r
-valued-s
e
lmethods'
commit
|
commitdiff
|
tree
2009-06-09
Te
e
mu
M
urtola
New
char
a
c
ter
-
valued selection keywords
.
commit
|
commitdiff
|
tree
2009-06-09
Teemu M
u
rtola
Added a
S
METH_CHAR
V
AL f
l
ag for selection me
t
hods
.
commit
|
commitdiff
|
tree
2009-06-09
Teemu Murtola
Remo
v
e
d
special-case handlin
g
f
r
om _g
m
x_s
e
lv
a
lue_reserve()
.
commit
|
commitdiff
|
tree
2009-06-08
Teemu Mu
r
tola
More
m
odular handlin
g
of selec
t
ion type
s
a
nd
values
.
commit
|
commitdiff
|
tree
2009-06-08
Teemu Murtola
F
i
xed lin
e
numbers in generat
e
d B
i
son/Flex fi
l
es
.
commit
|
commitdiff
|
tree
2009-06-08
Teemu Murtola
A
dded config
.
h
.
i
n
t
o
.
gitign
o
r
e
.
commit
|
commitdiff
|
tree
2009-06-08
Teemu
M
u
rt
o
la
Removed some
em
p
t
y bogus
files (*bm, *h)
.
commit
|
commitdiff
|
tree
2009-06-08
T
e
emu
M
urto
l
a
Add
e
d a program
f
or testin
g
/de
b
ugging se
l
ections
.
commit
|
commitdiff
|
tree
2009-06-08
T
e
emu Murtola
N
ew simple selecti
o
n
k
eyw
o
rd
s
.
commit
|
commitdiff
|
tree
2009-06-08
Teemu Murto
l
a
Fixed incorrect res
i
due numberi
n
g
i
n
s
el
e
ctions
.
commit
|
commitdiff
|
tree