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2017-08-03	David van der Spoel	Fixed bug in gmx disres indexing arrays.	commit \| commitdiff \| tree
2017-08-02	Berk Hess	Make loop variables in orires.cpp local	commit \| commitdiff \| tree
2017-08-02	Berk Hess	Add check for nr of orientation restraints	commit \| commitdiff \| tree
2017-07-19	David van der Spoel	Fixed test-order dependency in gmxpreprocess tests.	commit \| commitdiff \| tree
2017-07-19	David van der Spoel	Fix non-reproducability of clustsize tests.	commit \| commitdiff \| tree
2017-04-29	Carsten Kutzner	Minor header file cleanup in ED, IMD and CompEL modules	commit \| commitdiff \| tree
2017-04-22	Mark Abraham	Clean up memory usage with oenv and xvg writing	commit \| commitdiff \| tree
2017-03-13	Teemu Murtola	Improve option support & tests for key-value trees	commit \| commitdiff \| tree
2017-03-13	Teemu Murtola	Remove manual alignment from InMemorySerializer	commit \| commitdiff \| tree
2017-03-12	Teemu Murtola	Consistent TextWriter trailing whitespace handling	commit \| commitdiff \| tree
2017-03-12	David van der Spoel	Added tests for gmx clustsize.	commit \| commitdiff \| tree
2017-03-04	Vedran Miletić	Document that we now support AMD GCN on Mesa/LLVM	commit \| commitdiff \| tree
2017-02-28	Berk Hess	Add load balance fraction to DLB print	commit \| commitdiff \| tree
2017-02-28	Teemu Murtola	More documentation for key-value trees	commit \| commitdiff \| tree
2017-02-27	David van der Spoel	Fixes bug in gmx solvate with -shell that yielded 0...	commit \| commitdiff \| tree
2017-02-09	Aleksei Iupinov	Add initialization to dvdlambda in bonded forces tests	commit \| commitdiff \| tree
2017-02-08	Mark Abraham	Remove docs for unimplemented trjconv -clustercenter	commit \| commitdiff \| tree
2017-02-02	Mark Abraham	Clarify use of tau-p and pcoupltype	commit \| commitdiff \| tree
2017-01-30	Mark Abraham	Don't print invalid performance data	commit \| commitdiff \| tree
2016-12-14	Mark Abraham	Fix misleading parallelization docs for gmx wham	commit \| commitdiff \| tree
2016-11-21	Aleksei Iupinov	Move hardcoded PME grid indexing constants into header	commit \| commitdiff \| tree
2016-11-18	David van der Spoel	Added first tests of bonded force functions.	commit \| commitdiff \| tree
2016-11-16	Mark Abraham	Enhanced ArrayRef	commit \| commitdiff \| tree
2016-11-16	Mark Abraham	Created paddedvector.h	commit \| commitdiff \| tree
2016-10-24	Teemu Murtola	Electric field mdp parsing using options	commit \| commitdiff \| tree
2016-10-24	Teemu Murtola	Support for default values from Options to KeyValueTree	commit \| commitdiff \| tree
2016-10-14	Berk Hess	Apply Berendsen P-couple at nstpcouple steps	commit \| commitdiff \| tree
2016-10-14	Teemu Murtola	Use gmx_mtop_t in selections, part 3	commit \| commitdiff \| tree
2016-10-13	Teemu Murtola	Getter for mapped paths from KeyValueTreeTransform	commit \| commitdiff \| tree
2016-10-08	Berk Hess	Add readConfAndTopology	commit \| commitdiff \| tree
2016-10-03	Philip Loche	EW3DC for non-neutral systems	commit \| commitdiff \| tree
2016-09-29	Berk Hess	Use std::vector in t_state	commit \| commitdiff \| tree
2016-09-29	Berk Hess	Add flags for optional t_atoms entries	commit \| commitdiff \| tree
2016-09-20	Berk Hess	Remove state duplication in serial runs	commit \| commitdiff \| tree
2016-09-20	David van der Spoel	Made correlation function routine use std::vector	commit \| commitdiff \| tree
2016-09-16	Berk Hess	Made distance restraints work with threads and DD	commit \| commitdiff \| tree
2016-09-15	Aleksei Iupinov	Move the PME Ewald coefficients to the PME structure	commit \| commitdiff \| tree
2016-09-13	Roland Schulz	Tidy: modernize-use-emplace	commit \| commitdiff \| tree
2016-09-13	Berk Hess	Change ED and swapstate to pointers in t_state	commit \| commitdiff \| tree
2016-09-11	Vedran Miletić	Print OpenCL error string instead of error code	commit \| commitdiff \| tree
2016-09-10	Berk Hess	Remove continuation from convert_tpr	commit \| commitdiff \| tree
2016-09-10	Aleksei Iupinov	Fix PME data destructor not being called	commit \| commitdiff \| tree
2016-09-05	David van der Spoel	Merge "Merge branch release-2016"	commit \| commitdiff \| tree
2016-08-27	Szilárd Páll	Make ASAN/TSAN/MSAN build types easier to discover	commit \| commitdiff \| tree
2016-08-27	Mark Abraham	Stop using gmx_fatal in grompp	commit \| commitdiff \| tree
2016-08-27	Teemu Murtola	Support KeyValueTree objects in refdata	commit \| commitdiff \| tree
2016-08-27	Berk Hess	Reduce rounding errors in SETTLE	commit \| commitdiff \| tree
2016-08-27	Roland Schulz	Fix build with GMX_USE_TNG=off	commit \| commitdiff \| tree
2016-07-31	David van der Spoel	Merge "Merge branch release-5-1 into release-2016"...	commit \| commitdiff \| tree
2016-07-08	Vedran Miletić	Print working dir before command line	commit \| commitdiff \| tree
2016-07-08	David van der Spoel	Merge "Merge branch release-5-1 into release-2016"...	commit \| commitdiff \| tree
2016-07-08	Szilárd Páll	User guide clarifications	commit \| commitdiff \| tree
2016-07-07	Berk Hess	Relax pull PBC check	commit \| commitdiff \| tree
2016-07-03	Berk Hess	Add grompp check for pull group	commit \| commitdiff \| tree
2016-06-26	Berk Hess	Fix vsite bug with MPI+OpenMP	commit \| commitdiff \| tree
2016-06-21	Berk Hess	Fix bug with fbposres+MPI+OpenMP	commit \| commitdiff \| tree
2016-05-30	Berk Hess	Add grompp check for unbound atoms	commit \| commitdiff \| tree
2016-05-08	Mark Abraham	Fix constants, units and conversion factors	commit \| commitdiff \| tree
2015-12-09	Teemu Murtola	Split txtdump.*, part 1	commit \| commitdiff \| tree
2015-12-05	Magnus Lundborg	Write forces and velocities to compressed TNG.	commit \| commitdiff \| tree
2015-11-22	David van der Spoel	Cleanups in legacyheader/types/commrec.h	commit \| commitdiff \| tree
2015-11-20	Mark Abraham	Split wallcycle interface	commit \| commitdiff \| tree
2015-11-14	Berk Hess	Optimized the bonded thread force reduction	commit \| commitdiff \| tree
2015-11-12	David van der Spoel	Moved copyrite.* to fileio from gmxlib and legacyheaders.	commit \| commitdiff \| tree
2015-10-18	David van der Spoel	Moved pbc/cut-off related utilities from typedefs to...	commit \| commitdiff \| tree
2015-10-15	Berk Hess	Fixed nbnxn_4xN performance regression	commit \| commitdiff \| tree
2015-10-07	Berk Hess	Fix bugs with intermol interactions and DD	commit \| commitdiff \| tree
2015-10-02	David van der Spoel	Removed simple.h from nb_kernel_avx_256_XX	commit \| commitdiff \| tree
2015-10-01	Teemu Murtola	Enable time unit and selections in ICommandLineOptionsModule	commit \| commitdiff \| tree
2015-09-29	Mark Abraham	Clean up of tables code	commit \| commitdiff \| tree
2015-09-29	Mark Abraham	Move tables.c to new module and C++	commit \| commitdiff \| tree
2015-09-22	David van der Spoel	Removed four includes from legacyheaders/typedefs.h	commit \| commitdiff \| tree
2015-07-29	Erik Lindahl	Update naming standards to avoid hungarian notation...	commit \| commitdiff \| tree
2014-09-22	Mark Abraham	More quotes	commit \| commitdiff \| tree
2014-09-22	Erik Lindahl	More quotes	commit \| commitdiff \| tree
2014-09-19	Teemu Murtola	Add support for cumulative histograms	commit \| commitdiff \| tree
2014-06-13	Berk Hess	Made shells work with the Verlet scheme	commit \| commitdiff \| tree
2014-06-12	Berk Hess	Made gmxcheck -rmsd work again with forces	commit \| commitdiff \| tree
2014-06-12	Erik Lindahl	Make sure genrestr uses the disre_up2 parameter	commit \| commitdiff \| tree
2014-06-12	Erik Lindahl	Removed undocumented -map and -mdata options from g_sham.	commit \| commitdiff \| tree
2014-06-12	Erik Lindahl	Always write output from genion	commit \| commitdiff \| tree
2014-06-11	Berk Hess	Made repl_ex time step more readable	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Improve (Selection\|FileName)OptionManager handling	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Replace all command line parsing with Options	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Move residuetype handling to its own file.	commit \| commitdiff \| tree
2014-06-07	Teemu Murtola	Remove support for "old" index file format	commit \| commitdiff \| tree
2014-05-31	Magnus Lundborg	Bug fix in the TNG library to improve reading.	commit \| commitdiff \| tree
2014-05-18	Teemu Murtola	Move 3dview.* to programs/view/	commit \| commitdiff \| tree
2014-03-17	Teemu Murtola	Update manual analysis section	commit \| commitdiff \| tree
2014-02-21	Nina Fischer	Added new amber99sb-ildn-bsc0 force field.	commit \| commitdiff \| tree
2014-01-19	Mark Abraham	Clean up after gmxcpp	commit \| commitdiff \| tree

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