repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Merge "Added support for dssp2.X with the -ver option" into release-4-6
2012-03-12
Teemu Murtola
Merge "Made description s
t
ring for g_se
l
e
c
t -select
.
.
.
commit
|
commitdiff
|
tree
2012-02-21
Teem
u
Murtola
M
e
rge "Use Git server
(
m
irror) to avoi
d
fetching pr
o
blem
s
.
.
.
commit
|
commitdiff
|
tree
2012-02-02
Teemu Murtola
Merge "R
e
vert "Fix ICC
o
n
Wind
o
ws Build
"
" i
n
to release
.
.
.
commit
|
commitdiff
|
tree
2011-12-01
Teemu Mur
t
o
l
a
F
ix selection parsing
i
n double precision
.
commit
|
commitdiff
|
tree
2011-12-01
Tee
m
u
M
urtola
A
v
oid possibl
e
warnings if HUGE_VAL
!
= infin
i
ty
.
commit
|
commitdiff
|
tree
2011-10-19
T
e
emu
M
urtola
Me
r
ge "fixed pull constraining doing nothing, fix
e
s
.
.
.
commit
|
commitdiff
|
tree
2011-02-16
Teemu Murtola
Fixed a r
a
r
e
bug in selection p
o
sition
h
andling
.
commit
|
commitdiff
|
tree
2010-10-18
T
e
emu Murtola
Use CMake
i
ns
t
all for install-
m
dru
n
(bugs #549,
#
555)
commit
|
commitdiff
|
tree
2010-10-13
Teemu
M
u
rtola
Fixed selection
p
roblems
w
ith a
mi
n
us s
i
g
n
.
commit
|
commitdiff
|
tree
2010-10-13
T
eemu Murto
l
a
Fixed valgrind war
n
ing
s
in selectio
n
s
.
commit
|
commitdiff
|
tree
2010-10-13
Teemu Mur
t
ol
a
Fixed
m
ore selection negati
o
n segfaults
.
commit
|
commitdiff
|
tree
2010-10-13
Teemu Murtola
Fixed segfaults wi
t
h neg
a
tions in sele
c
tions
.
commit
|
commitdiff
|
tree
2010-09-20
Teemu
Murtola
F
i
xes for sele
c
ti
o
n
modifier init
i
a
l
iz
a
ti
o
n
.
commit
|
commitdiff
|
tree
2010-09-14
T
e
emu Murtola
F
i
x
e
d version generation scrip
t
to work
on Macs
.
commit
|
commitdiff
|
tree
2010-09-10
Teemu Murtola
C
Make documentat
i
on i
m
provements (bug
#539)
.
commit
|
commitdiff
|
tree
2010-09-06
Teemu
Mu
r
tola
Improved package version handling in CMake
.
commit
|
commitdiff
|
tree
2010-08-31
Teemu
M
u
rt
o
la
Fixed
C
M
a
ke libxml2 detection
.
commit
|
commitdiff
|
tree
2010-08-30
Teemu Murtol
a
Co
s
metic f
i
x
to include/CMakeLists
.
txt
.
commit
|
commitdiff
|
tree
2010-08-26
T
e
emu
M
u
rt
o
la
Fixed valgri
n
d
w
a
r
nings and a segfault in pdb2
g
mx
.
commit
|
commitdiff
|
tree
2010-08-13
Teemu Mu
r
tola
Cosm
e
tic fixes for
s
el
e
c
t
ion parsin
g
.
commit
|
commitdiff
|
tree
2010-08-13
Teemu
M
u
rt
o
la
Fixed CMake build w
i
th CMake 2
.
6
.
2
.
commit
|
commitdiff
|
tree
2010-08-11
T
eemu
Mu
r
tol
a
Fixed
non-interact
i
v
e stdi
n
selection pars
i
ng
.
commit
|
commitdiff
|
tree
2010-08-10
Tee
m
u Murtola
Fixe
d
a segfault
in selec
t
i
o
n code
.
commit
|
commitdiff
|
tree
2010-08-09
Teemu M
u
rtola
Fixed
compiler
warning
s
in qm
_
orca
.
c
.
commit
|
commitdiff
|
tree
2010-08-09
T
e
e
m
u Murtola
More PM
E
-User-Switch fixes
.
commit
|
commitdiff
|
tree
2010-08-09
Teemu M
u
rtola
Fixes f
o
r
PME-User-
S
wit
c
h
.
commit
|
commitdiff
|
tree
2010-08-06
T
eemu M
u
rtola
Added a commen
t
abo
u
t ICC war
n
ings
i
n p
a
r
s
er
.
y
.
commit
|
commitdiff
|
tree
2010-06-29
T
e
e
mu Murt
o
la
mdru
n
again prin
t
s
copyright
no
t
ice to
s
tderr
.
commit
|
commitdiff
|
tree
2010-06-29
Teem
u
Murtola
Added gmxcpp suppo
r
t for -Dfoo=b
a
r
i
n mdp files
.
commit
|
commitdiff
|
tree
2010-06-28
T
e
e
mu Murtol
a
R
emoved unnecessary typeca
s
ts
f
r
o
m smalloc
.
h
.
commit
|
commitdiff
|
tree
2010-06-28
Teemu Murtola
F
i
xe
d
some easy-to-f
i
x C++ warning
s
.
commit
|
commitdiff
|
tree
2010-06-28
Teemu
Mu
r
tola
Fixed a typo in selection compiler
.
commit
|
commitdiff
|
tree
2010-06-22
Teemu Murtola
Fixe
d
gmxcpp di
r
ector
y
search fo
r
includ
e
files
.
commit
|
commitdiff
|
tree
2010-06-13
Teemu Murtol
a
Fixed a compiler war
n
ing
.
commit
|
commitdiff
|
tree
2010-06-08
Tee
m
u Murt
o
l
a
Change
d
se
l
ec
t
ion boole
a
n operat
o
r pr
e
c
e
dence
.
commit
|
commitdiff
|
tree
2010-05-27
Teemu Murtola
Fixed a few sig
n
ed/unsigned comparison w
a
rning
s
.
commit
|
commitdiff
|
tree
2010-05-21
Teemu Murto
l
a
Selections com
p
ile
r
comme
n
ts a
n
d de
b
ugging ai
d
s
.
commit
|
commitdiff
|
tree
2010-05-21
Teemu Murtola
Simp
l
ified selection compilation
,
fixing
a
bug
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu M
u
rtol
a
A
dde
d
geminate
.
c t
o
src/tools/C
M
ake
L
is
t
s
.
txt
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Mur
t
o
l
a
Reduced memory
u
sage
f
or st
a
tic se
l
ect
i
ons
.
commit
|
commitdiff
|
tree
2010-05-20
T
e
e
m
u Mur
t
ola
Selection comp
i
ler bug
f
ix
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murto
l
a
Fixed save_re
a
lloc() to not leak memory
.
commit
|
commitdiff
|
tree
2010-05-20
Teemu Murtola
Redu
c
ed memory use for arithme
t
ic in selections
.
commit
|
commitdiff
|
tree
2010-05-20
T
eemu Murtola
Removed co
m
piler
w
a
rnings
.
commit
|
commitdiff
|
tree
2010-05-19
Tee
m
u Murtola
M
erge branch 'master' of git@git
.
gromac
s
.
org:gr
o
macs
commit
|
commitdiff
|
tree
2010-05-19
Teemu Murtola
Removed
obsolete selection code
.
commit
|
commitdiff
|
tree
2010-05-19
Teemu Mur
t
ola
B
i
g r
e
work of selec
t
ion compilation/e
v
aluat
i
on
.
commit
|
commitdiff
|
tree
2010-05-14
Teemu Murtola
Restruc
t
u
red sele
c
tion
su
b
expression
c
ompi
l
at
i
on
.
commit
|
commitdiff
|
tree
2010-05-14
Teemu Murtola
Basic s
e
lection me
m
o
ry
pooling
.
commit
|
commitdiff
|
tree
2010-05-14
Teem
u
M
u
rtola
Simpler special case subexpression handling
.
commit
|
commitdiff
|
tree
2010-05-14
Teem
u
Murtola
Sel
e
ction compile
r
bo
o
l fla
g
s
i
n
t
o a single field
.
commit
|
commitdiff
|
tree
2010-05-11
T
eemu Murtola
U
p
dated sh
a
re/top
Makefile
.
am files
.
commit
|
commitdiff
|
tree
2010-05-11
Te
e
mu Murtola
Grid
-
based utility nbs
e
arch implementa
t
ion
.
commit
|
commitdiff
|
tree
2010-05-11
T
e
e
mu Murtola
Improve
d
neighbor
search
i
ng
API for
a
nal
y
sis
.
commit
|
commitdiff
|
tree
2010-05-07
T
e
em
u
Murtola
M
inor im
p
r
ov
e
men
t
s t
o
selection help
.
commit
|
commitdiff
|
tree
2010-05-07
Teemu Murtola
Basic arith
m
etic exp
r
essi
o
n
s
upport in sele
c
tions
.
commit
|
commitdiff
|
tree
2010-05-06
T
eemu M
u
rtola
M
ore
memory opt
i
mizati
o
ns for
se
l
e
c
tions
.
commit
|
commitdiff
|
tree
2010-05-06
Teemu Murto
l
a
Reduce
d
p
eak memory u
s
age for selections
.
commit
|
commitdiff
|
tree
2010-05-05
Teemu Mur
t
ola
Fixed a b
u
g
in gmx_
w
c
m
atch()
.
commit
|
commitdiff
|
tree
2010-04-29
Teemu Mu
r
to
l
a
F
i
xed some memory leaks
.
commit
|
commitdiff
|
tree
2010-04-29
T
eem
u
Murtola
F
i
x
f
o
r trj
c
onv -
e
optio
n
(bug #305
)
.
commit
|
commitdiff
|
tree
2010-04-28
T
e
emu Mur
t
o
la
Fixed g_wham error mes
s
age (bugzilla #39
7
)
.
commit
|
commitdiff
|
tree
2010-04-28
Teem
u
Murtola
Added a few functions
fo
r
f
r
e
eing memory
.
commit
|
commitdiff
|
tree
2010-04-28
T
e
emu Mu
r
tola
S
election ba
s
ed on molecule
n
umbers
.
commit
|
commitdiff
|
tree
2010-04-28
Teemu Murtola
Fixed a
me
m
o
ry leak in selecti
o
n code
.
commit
|
commitdiff
|
tree
2010-04-27
Teemu
M
u
r
t
o
l
a
"
same"
selection
s
with
string k
e
ywor
d
s
.
commit
|
commitdiff
|
tree
2010-04-27
Teem
u
Murtola
Support for selection string keywords as para
m
s
.
commit
|
commitdiff
|
tree
2010-04-27
Teem
u
Murt
o
la
Fixed a
m
e
m
or
y
lea
k
in pars
e
_commo
n
_args
.
commit
|
commitdiff
|
tree
2010-04-27
T
e
emu Murtola
Removed in
c
o
rr
e
ct
make mdrun cmds in Ma
k
efile
.
am
.
commit
|
commitdiff
|
tree
2010-04-26
T
ee
m
u Murtola
Merge branch
'
master' of git
@
gi
t
.
groma
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2010-04-26
Teemu Mur
t
ola
Improved
s
e
l
ection k
e
yw
o
rd "same"
.
commit
|
commitdiff
|
tree
2010-04-26
T
e
emu Murtola
Added some synonyms for common sele
c
tion keyw
o
rds
.
commit
|
commitdiff
|
tree
2010-04-26
Te
e
mu
M
urt
o
la
Fix
e
d m
i
n
or
m
emo
r
y
l
eak o
n
s
ome
s
election er
r
ors
.
commit
|
commitdiff
|
tree
2010-04-26
Teemu Murtola
Impro
v
ement to commit 67311e3
.
commit
|
commitdiff
|
tree
2010-04-26
T
eemu Murtola
I
mproved selection subexpre
s
sion
c
ompilatio
n
.
commit
|
commitdiff
|
tree
2010-04-22
T
e
e
m
u Murtola
Separate method for
freeing selection method data
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Mu
r
tola
Made two se
l
ection pa
r
ser functions non-static
.
commit
|
commitdiff
|
tree
2010-04-22
Te
e
mu
M
urto
l
a
Sele
c
t
ion c
o
mpi
l
er mem
o
ry a
l
loc
a
tion bug fix
.
commit
|
commitdiff
|
tree
2010-04-22
Teemu Murtola
S
upport
i
n
i
t_frame i
n
s
tatic selectio
n
m
ethods
.
commit
|
commitdiff
|
tree
2010-04-20
Teemu Murtola
A
d
d
e
d g_select t
o
p
r
ograms
.
txt
.
commit
|
commitdiff
|
tree
2010-04-20
Teemu Murtola
M
ore robust libtool prefix strip
p
in
g
.
commit
|
commitdiff
|
tree
2010-04-12
T
e
emu
M
urtola
C++ fix
e
s for snew() an
d
friends
.
commit
|
commitdiff
|
tree
2010-04-08
Te
e
mu Murtola
Au
t
oconf checks for v
e
rsion in
f
o generation
.
commit
|
commitdiff
|
tree
2010-03-24
Te
e
mu Murtola
Fix
e
d g
e
nversion
.
sh on M
a
c
s
.
commit
|
commitdiff
|
tree
2010-03-11
Teemu
M
urt
o
la
Minor
v
ersion string updat
e
.
commit
|
commitdiff
|
tree
2010-03-05
Tee
m
u Murtola
I
m
proved ve
r
si
o
n
s
tr
i
ngs
.
commit
|
commitdiff
|
tree
2010-03-04
T
e
emu Murtol
a
Added selection example
s
.
commit
|
commitdiff
|
tree
2010-03-01
Teemu M
u
rtol
a
Fixed a bug
c
a
using in
c
orrect
empty selection
s
.
commit
|
commitdiff
|
tree
2010-02-26
Teem
u
Murtola
Impro
v
ed version for b
u
ilds
f
rom modified trees
.
commit
|
commitdiff
|
tree
2010-02-22
Teemu Murtola
Backported git sha1 vers
i
on string
(b
u
gzill
a
#393)
.
commit
|
commitdiff
|
tree
2010-02-18
Teemu Murtola
A more i
n
tuit
i
ve fix
t
o
c
o
p
y
r
i
te
.
c
dependency
.
commit
|
commitdiff
|
tree
2010-02-18
Teemu Mur
t
ola
S
h
ow git sh
a
1
ha
s
h
i
n versi
o
n
string
(bug #
3
93)
.
commit
|
commitdiff
|
tree
2009-12-19
Teemu
M
urtola
Fixed interac
t
i
v
e
selection
h
e
l
p
.
commit
|
commitdiff
|
tree
2009-12-17
T
e
e
mu Murtola
Velocities and forces for selections
.
commit
|
commitdiff
|
tree
2009-12-16
Teem
u
Murtola
Use read_stdin_l
i
n
e() for
selections from a pipe
.
commit
|
commitdiff
|
tree
2009-12-14
Teemu Murtol
a
Bette
r
selection stdin h
a
ndling
.
commit
|
commitdiff
|
tree
2009-11-11
Teemu Murtola
Fixed seg
f
aults with empty selec
t
io
n
s
.
commit
|
commitdiff
|
tree
2009-11-11
Teemu Murtola
More
g
ene
r
al
s
e
lectio
n
parser grammar
.
commit
|
commitdiff
|
tree
2009-11-10
Te
e
mu Murtola
gmxcpp fixes (bug #360 plus other
fixes
)
.
commit
|
commitdiff
|
tree
2009-11-10
T
e
emu M
u
r
t
ola
gmxcpp fixes (
b
ug #360 plus
o
ther f
i
xes)
.
commit
|
commitdiff
|
tree
next