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2019-09-04	Berk Hess	Simplify handling of DD bonded distances	commit \| commitdiff \| tree
2019-09-04	Berk Hess	Move constraint and bonded filtering info into DDSystemInfo	commit \| commitdiff \| tree
2019-09-03	Berk Hess	Extract DDSystemInfo from gmx_domdec_comm_t	commit \| commitdiff \| tree
2019-09-03	Berk Hess	Unify manual and auto DD grid choices	commit \| commitdiff \| tree
2019-08-20	Mark Abraham	Reduce cosine acceleration quantity properly	commit \| commitdiff \| tree
2019-08-20	Berk Hess	Fix missing bonded forces with CUDA GPUs and DD	commit \| commitdiff \| tree
2019-08-05	Berk Hess	Change ForceOutputs to a class	commit \| commitdiff \| tree
2019-08-01	Paul Bauer	Merge release-2019 into master	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Remove unused CGLO_INITIALIZATION	commit \| commitdiff \| tree
2019-07-31	Berk Hess	Remove vcm removal from compute_globals()	commit \| commitdiff \| tree
2019-07-30	Berk Hess	Use invsqrt and cbrt in free energy kernel	commit \| commitdiff \| tree
2019-07-29	Berk Hess	Fix segmentation fault with cosine pulling	commit \| commitdiff \| tree
2019-07-28	Berk Hess	Removed generalized reaction-field	commit \| commitdiff \| tree
2019-07-22	Szilárd Páll	Conditionally pin GPU-related grid data	commit \| commitdiff \| tree
2019-07-05	Berk Hess	Change affinity enum to enum class	commit \| commitdiff \| tree
2019-07-02	Berk Hess	Refactor thread affinity checking	commit \| commitdiff \| tree
2019-06-26	Berk Hess	Remove tabulation from free-energy kernel	commit \| commitdiff \| tree
2019-06-17	Berk Hess	Remove unused nbnxm include files	commit \| commitdiff \| tree
2019-06-10	Berk Hess	Fix gmx wham with angle geometries	commit \| commitdiff \| tree
2019-05-14	Berk Hess	Make all do_force_lowlevel() input const	commit \| commitdiff \| tree
2019-05-14	Berk Hess	Correct user guide postion restraint virial	commit \| commitdiff \| tree
2019-05-04	Berk Hess	Remove PME exclusion correction	commit \| commitdiff \| tree
2019-05-03	Berk Hess	Removed non-existent AWH mdp option	commit \| commitdiff \| tree
2019-05-03	Berk Hess	Convert manage_threading_t and gmx_enerdata_t to C++	commit \| commitdiff \| tree
2019-04-30	Berk Hess	Add con/destructor for t_forcetable	commit \| commitdiff \| tree
2019-04-30	Berk Hess	Convert DispersionCorrection to a class	commit \| commitdiff \| tree
2019-04-24	Szilárd Páll	Fix CUDA fallback shmem gather reduction	commit \| commitdiff \| tree
2019-04-18	Szilárd Páll	Fix warnings & consolidate declarations	commit \| commitdiff \| tree
2019-04-18	Mark Abraham	Move pull work struct out of inputrec	commit \| commitdiff \| tree
2019-04-18	Mark Abraham	Improve swapcoords session lifetime management	commit \| commitdiff \| tree
2019-04-17	Berk Hess	Remove group scheme search code	commit \| commitdiff \| tree
2019-04-17	Berk Hess	Simplify vsite PBC handling	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Group scheme related cleanup	commit \| commitdiff \| tree
2019-04-16	Szilárd Páll	Remove Group scheme neighbor search wrapper	commit \| commitdiff \| tree
2019-04-16	Paul Bauer	Fix off-by-one error in gmx cluster	commit \| commitdiff \| tree
2019-03-28	Mark Abraham	Move DomdecOptions into its own header	commit \| commitdiff \| tree
2019-03-26	Szilárd Páll	Skip PBC calculation when there are no listed forces	commit \| commitdiff \| tree
2019-03-26	Szilárd Páll	do_force_cutsVERLET cleanup	commit \| commitdiff \| tree
2019-03-25	Berk Hess	Convert nbnxn_pairlist_set_t to class PairlistSet	commit \| commitdiff \| tree
2019-03-25	Artem Zhmurov	Remove unused headers	commit \| commitdiff \| tree
2019-03-15	Berk Hess	Change nbnxn_search to class PairSearch	commit \| commitdiff \| tree
2019-03-15	Berk Hess	Extract DomainSetup from nbnxn_search	commit \| commitdiff \| tree
2019-03-14	Berk Hess	Change nbnxm macros to constexpr	commit \| commitdiff \| tree
2019-03-14	Berk Hess	Move functions to gridset.cpp	commit \| commitdiff \| tree
2019-03-14	Berk Hess	Add nbnxm GridSet class	commit \| commitdiff \| tree
2019-03-12	Berk Hess	Move nbnxm atom macros to atomdata.h	commit \| commitdiff \| tree
2019-03-07	Mark Abraham	Eliminate mdlib/mdrun.h	commit \| commitdiff \| tree
2019-03-05	Szilárd Páll	Relax OpenCL gather kernel barrier on AMD	commit \| commitdiff \| tree
2019-03-05	Berk Hess	Move nbnxm atomdata types to atomdata.h	commit \| commitdiff \| tree
2019-02-28	Berk Hess	Use unique_ptr in nonbonded_verlet_t	commit \| commitdiff \| tree
2019-02-27	Berk Hess	Clean up dispersioncorrection.cpp	commit \| commitdiff \| tree
2019-02-27	Berk Hess	Fix 4 compilers warnings	commit \| commitdiff \| tree
2019-02-26	Berk Hess	Correct grompp index file error message	commit \| commitdiff \| tree
2019-02-26	Berk Hess	Clean up mtop pbc functions	commit \| commitdiff \| tree
2019-02-22	Berk Hess	Formalize dynamic pruning with GPU emulation	commit \| commitdiff \| tree
2019-02-19	Paul Bauer	Change icc-18 to no-hwloc	commit \| commitdiff \| tree
2019-02-01	Berk Hess	Fix incorrect LJ repulsion force switching on GPUs	commit \| commitdiff \| tree
2019-01-23	Berk Hess	Fix error with 2D/3D DLB	commit \| commitdiff \| tree
2019-01-07	Kevin Boyd	Clean up ekind struct	commit \| commitdiff \| tree
2019-01-03	Berk Hess	Fix segmentation fault in DD code	commit \| commitdiff \| tree
2018-12-21	Berk Hess	Improve nbnxn cjFromCi() function	commit \| commitdiff \| tree
2018-12-21	Kevin Boyd	Free global_stat at end of do_md	commit \| commitdiff \| tree
2018-12-21	Kevin Boyd	Call wallcycle counter cleanup function	commit \| commitdiff \| tree
2018-12-21	Kevin Boyd	Fix leak in legacymdrunoptions	commit \| commitdiff \| tree
2018-12-21	Kevin Boyd	Fix small leak in forcerec	commit \| commitdiff \| tree
2018-12-20	Szilárd Páll	Fix CUDA compiled target-device compatibility check	commit \| commitdiff \| tree
2018-12-20	Szilárd Páll	Correct CUDA compatibility check	commit \| commitdiff \| tree
2018-12-12	Berk Hess	Temporary fix for OpenCL PME gather	commit \| commitdiff \| tree
2018-12-10	Mark Abraham	Make only mdrun report process ID	commit \| commitdiff \| tree
2018-12-06	Szilárd Páll	Add Bonded GPU launch overhead cycle subcounter	commit \| commitdiff \| tree
2018-12-06	Szilárd Páll	Swap the order of GPU bonded and nonbonded launch	commit \| commitdiff \| tree
2018-12-06	Szilárd Páll	Fix conditional in nonlocal nbnxn GPU work skipping	commit \| commitdiff \| tree
2018-12-06	Szilárd Páll	Split nbnxn input copy and kernel launch	commit \| commitdiff \| tree
2018-12-05	Szilárd Páll	Correct thread count in the PME GPU reduction	commit \| commitdiff \| tree
2018-12-05	Berk Hess	Make large PME grids work on GPU	commit \| commitdiff \| tree
2018-12-03	Paul Bauer	Fix energy history reading	commit \| commitdiff \| tree
2018-11-26	Berk Hess	Fix FP exception in pull code	commit \| commitdiff \| tree
2018-11-16	Berk Hess	grompp now checks tau-p>=2*tau-t with NH+PR	commit \| commitdiff \| tree
2018-11-01	Berk Hess	Fix broken update groups	commit \| commitdiff \| tree
2018-10-31	Berk Hess	Fix FP exception in energy reduction	commit \| commitdiff \| tree
2018-10-31	Berk Hess	Correct grompp nstexpanded/nstcalcenergy check	commit \| commitdiff \| tree
2018-10-24	Paul Bauer	Update QM gaussian interface	commit \| commitdiff \| tree
2018-10-23	Berk Hess	Add missing constraint term to deltaH	commit \| commitdiff \| tree
2018-10-13	Mark Abraham	Quiet compiler warnings	commit \| commitdiff \| tree
2018-10-13	Viacheslav Bolnykh	Updated name of intemolecular exclusions function	commit \| commitdiff \| tree
2018-10-13	Mark Abraham	Deprecate various functionality in GROMACS 2019	commit \| commitdiff \| tree
2018-10-09	Berk Hess	Fix compiler warning	commit \| commitdiff \| tree
2018-10-03	Berk Hess	Remove unnecessary clearing in gmxcpp	commit \| commitdiff \| tree
2018-10-03	Berk Hess	Convert gmx_cpp to C++	commit \| commitdiff \| tree
2018-09-30	Berk Hess	Correct update group angle param type	commit \| commitdiff \| tree
2018-09-29	Mark Abraham	Remove NVML support	commit \| commitdiff \| tree
2018-09-29	Szilárd Páll	Fix constraints cycle counting	commit \| commitdiff \| tree
2018-09-29	Berk Hess	Refactoring in calc_verletbuf.cpp	commit \| commitdiff \| tree
2018-09-20	Paul Bauer	Always use mtop constructor	commit \| commitdiff \| tree
2018-09-20	Berk Hess	Fix type bug in trilinic DD code	commit \| commitdiff \| tree
2018-09-19	Berk Hess	Convert gmx_cmap_t to C++	commit \| commitdiff \| tree
2018-09-19	Berk Hess	Convert gmx_ffparams_t to C++	commit \| commitdiff \| tree
2018-09-18	Berk Hess	Refactor ddbox handling	commit \| commitdiff \| tree
2018-09-17	Berk Hess	Change pointers to InteractionList to references	commit \| commitdiff \| tree
2018-09-14	Berk Hess	Refactor getAtomGroupDistribution()	commit \| commitdiff \| tree
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