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2013-06-25	Mark Abraham	Fixed #include of header for atomics on K-computer	commit \| commitdiff \| tree
2013-06-13	Mark Abraham	Remove unused variables	commit \| commitdiff \| tree
2013-05-30	Mark Abraham	New patch release 4.6.2	commit \| commitdiff \| tree
2013-05-30	Mark Abraham	Work around for correct treatment of all-vs-all	commit \| commitdiff \| tree
2013-05-25	Mark Abraham	Make FFT detection quieter when nothing is changing	commit \| commitdiff \| tree
2013-05-22	Mark Abraham	Clarify g_gyrate -h	commit \| commitdiff \| tree
2013-05-22	Mark Abraham	Fix g_chi -omega	commit \| commitdiff \| tree
2013-05-21	Mark Abraham	Updated grompp cut-off and PME-Switch checks	commit \| commitdiff \| tree
2013-05-21	Mark Abraham	Hack compiler flags to silence warnings on gcc 4.8	commit \| commitdiff \| tree
2013-05-17	Mark Abraham	Introduce fatal error for GB with FE	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "Fixes "Function type U-B not implemented in...	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "improve build with OpenMM, still not 100% fixed...	commit \| commitdiff \| tree
2013-05-10	Mark Abraham	Merge "fixing rerun with free energy + .xtc or .gro...	commit \| commitdiff \| tree
2013-05-07	Mark Abraham	Fix extant references to former GPL licensing	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "Update linking to MKL and document same" into...	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "general SIMD acceleration for angles+dihedrals...	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "PME load balancing now checks for PME grid restrictio...	commit \| commitdiff \| tree
2013-04-29	Mark Abraham	Merge "Fixing a problem with dh/dl 1-4 interactions...	commit \| commitdiff \| tree
2013-04-26	Mark Abraham	Merge "CUDA PME kernels with analytical Ewald correction...	commit \| commitdiff \| tree
2013-04-26	Mark Abraham	Merge "improved load balancing with Verlet cut-off...	commit \| commitdiff \| tree
2013-04-26	Mark Abraham	Update linking to MKL and document same	commit \| commitdiff \| tree
2013-04-25	Mark Abraham	Merge "Merge branch 'release-4-5-patches'" into release-4-6	commit \| commitdiff \| tree
2013-04-22	Mark Abraham	Merge "Use git snapshots of the tests if are on git...	commit \| commitdiff \| tree
2013-04-19	Mark Abraham	v-rescale works with tau-t >= 0	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "removed x86 specifics from nbnxn SIMD kernels...	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "corrected log file wall time breakdown" into...	commit \| commitdiff \| tree
2013-04-12	Mark Abraham	Merge "made PME work with a mix of 1 and more threads...	commit \| commitdiff \| tree
2013-03-12	Mark Abraham	Merge "fix broken things in mkhtml" into release-4-6	commit \| commitdiff \| tree
2013-03-11	Mark Abraham	Added install guide section for BLAS/LAPACK	commit \| commitdiff \| tree
2013-03-11	Mark Abraham	Merge "Fixes linkage with FFTW + MKL for BLAS/LAPACK...	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	New patch release 4.6.1	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Fix automated regression testing GMXLIB value	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Fix regressiontests automated download	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Update shell completions	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Update outdated admin things	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Updated install guide	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	Warn if X11 was not found and the user wanted it	commit \| commitdiff \| tree
2013-03-05	Mark Abraham	fix broken things in mkhtml	commit \| commitdiff \| tree
2013-02-26	Mark Abraham	Uncrustified code changes since 4.6	commit \| commitdiff \| tree
2013-02-20	Mark Abraham	Merge release-4-5-patches into release-4-6	commit \| commitdiff \| tree
2013-02-18	Mark Abraham	Fix CMake namespace pollution	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Use explicit kernel pointer typecasts	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "Minor fixes to Verlet kernels" into release-4-6	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Bump shared object version to 7	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "improved PME load balancing reporting" into...	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "Re-generated group kernels" into release-4-6	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "Unwinds flag dependencies in g_order." into...	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "use legacy CUDA non-bonded kernels only on Fermi...	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "More descriptive Verlet kernel macro parameter...	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Minor fixes to Verlet kernels	commit \| commitdiff \| tree
2013-02-15	Mark Abraham	Merge "Fix and add Verlet kernel error messages" into...	commit \| commitdiff \| tree
2013-02-13	Mark Abraham	Fix code bug with thread-MPI on PowerPC with xlc	commit \| commitdiff \| tree
2013-02-13	Mark Abraham	More descriptive Verlet kernel macro parameter names	commit \| commitdiff \| tree
2013-02-13	Mark Abraham	Fix and add Verlet kernel error messages	commit \| commitdiff \| tree
2013-02-13	Mark Abraham	Re-generated group kernels	commit \| commitdiff \| tree
2013-02-12	Mark Abraham	Merge "PME-only counters are now reset with -maxh ...	commit \| commitdiff \| tree
2013-02-12	Mark Abraham	Merge "fixed bug with sd integrator and OpenMP threading...	commit \| commitdiff \| tree
2013-02-12	Mark Abraham	Merge "Fix CUDA_HOST_COMPILER flag name" into release-4-6	commit \| commitdiff \| tree
2013-02-09	Mark Abraham	Typo fix	commit \| commitdiff \| tree
2013-02-08	Mark Abraham	Merge "added back cuda.h includes to fix missing CUDA_VERSIO...	commit \| commitdiff \| tree
2013-02-08	Mark Abraham	Merge "Fixed flop counting for generic cg/adress kernels...	commit \| commitdiff \| tree
2013-02-08	Mark Abraham	Merge "cmake: fixed typo in template CMakeLists.txt...	commit \| commitdiff \| tree
2013-02-05	Mark Abraham	Merge "improved load balancing on the GPU" into release-4-6	commit \| commitdiff \| tree
2013-02-05	Mark Abraham	Documented what GMX_CPU_ACCELERATION really means	commit \| commitdiff \| tree
2013-01-22	Mark Abraham	Merge "Illegal acceleration defaulted to QPX" into...	commit \| commitdiff \| tree
2013-01-22	Mark Abraham	Merge "Re-licenced FindGROMACS.cmake (was written by...	commit \| commitdiff \| tree
2013-01-22	Mark Abraham	Merge "Fix TOUPPER usage" into release-4-6	commit \| commitdiff \| tree
2013-01-22	Mark Abraham	Merge "Updated html manual to 4.6" into release-4-6	commit \| commitdiff \| tree
2013-01-22	Mark Abraham	Merge "added missing cleanup of some nbnxn_cuda data...	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	Set version info for 4.6.x release series	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	New major release: 4.6	commit \| commitdiff \| tree
2013-01-18	Mark Abraham	Fixing copyright issues and code contributors Added Mark Abraham, Christoph Junghans and	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Updating the shell completion files	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Gromacs install guide updates.	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Remove unnecessary ICC flags affecting performance...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "improved CUDA kernel performance by pre-loading...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Fix trjconv -sub with .trr files" into release...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	BlueGene/Q installation notes	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge branch 'release-4-5-patches' into release-4-6	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Merge "Added mdp option 'calc-lambda-neighbors'." into...	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Fix trjconv -sub with .trr files	commit \| commitdiff \| tree
2013-01-17	Mark Abraham	Finally move OpenMM to contrib	commit \| commitdiff \| tree
2013-01-16	Mark Abraham	Quiet stderr output, particularly for multi-simulations	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Added check for valid wall_atomtype in .mdp	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Merge "Hid nbnxn kernel names behind a lookup function...	commit \| commitdiff \| tree
2013-01-15	Mark Abraham	Velocity-verlet integrators and v-rescale are broken	commit \| commitdiff \| tree
2013-01-14	Mark Abraham	Added fatal error for constraints + L-BFGS minimizer	commit \| commitdiff \| tree
2013-01-14	Mark Abraham	Hid nbnxn kernel names behind a lookup function	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Updated code checks with distance restraints	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Fixing trjconv -sub	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Noting that and why gmxdump -s -sys is broken	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Clarified some comments & warnings about thread pinning	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Manage BlueGene/Q configuration	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Re-organize BlueGene toolchain files	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Changed defaults for building shared libraries	commit \| commitdiff \| tree
2013-01-13	Mark Abraham	Merge "Added basic CPU topology information to cpuid...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "Revert default rlist/rvdw/rcoulomb to valid...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "fixed bug with Verlet + DD + bonded atom communicatio...	commit \| commitdiff \| tree
2013-01-10	Mark Abraham	Merge "Fixes SSE/AVX compilation under Windows" into...	commit \| commitdiff \| tree
2013-01-07	Mark Abraham	Reduce use of monolithic sets of compiler flags	commit \| commitdiff \| tree
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