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Enable uncrustify for OpenCL
2018-04-26
Sz
i
lá
r
d Pá
l
l
Bump requir
e
d
CUDA
v
er
s
ion to 7
.
0
commit
|
commitdiff
|
tree
2018-04-23
Szil
á
rd
Páll
Fix ic
c
warn
i
ng in
post-su
b
mit
commit
|
commitdiff
|
tree
2018-04-21
Sz
i
lárd Páll
Add post-subm
i
t w
i
th ARM HPC Toolc
h
ain
commit
|
commitdiff
|
tree
2018-04-21
Szilárd
Páll
Tweak PME run mode c
h
e
c
ks
commit
|
commitdiff
|
tree
2018-04-20
Szilárd
P
áll
Minor
f
ix for pre-submi
t
m
atrix docs
commit
|
commitdiff
|
tree
2018-04-19
Szilárd Páll
M
ove
the
P
ME GPU clearing to the
e
n
d
of the step
commit
|
commitdiff
|
tree
2018-04-16
Szilá
r
d Páll
Add post-submit test
w
ith hwloc off
commit
|
commitdiff
|
tree
2018-04-13
Sz
i
lárd Páll
Use triva
l
u
e option
for
GMX_HWLOC
commit
|
commitdiff
|
tree
2018-04-05
Szilárd P
á
ll
Refac
t
or cj pre
l
oad in the
n
o
n
b
o
nded OpenCL
k
e
rnels
commit
|
commitdiff
|
tree
2018-03-29
Szilárd P
á
ll
Tweak/
e
nable icc 18 post
-
submit
tests
commit
|
commitdiff
|
tree
2018-03-29
Szilárd Páll
Swi
t
ch
C
UDA 9
.
0/
g
cc 5 test to CUDA 9
.
1
/
g
c
c
6
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Páll
R
equire OpenCL 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Páll
Fix cl
a
ng 6
.
0 w
i
th
CU
D
A
9
.
0
commit
|
commitdiff
|
tree
2018-03-12
S
zilárd Páll
Avo
i
d icc-spe
c
if
i
c -march=c
o
re-
a
v
x
2
f
l
ag with gcc/cl
a
n
g
commit
|
commitdiff
|
tree
2018-03-06
Szilárd Pál
l
Extend "F
i
nding
ou
t
how to run mdr
u
n
b
etter"
s
e
c
tio
n
commit
|
commitdiff
|
tree
2018-03-05
S
z
ilárd
P
áll
Add to the contributo
r
section
commit
|
commitdiff
|
tree
2018-02-21
Szilárd Páll
Switch pre-submit
CUDA 8
.
0 test to 9
.
0
commit
|
commitdiff
|
tree
2018-02-20
S
zilárd P
á
ll
Avoid abor
t
ing mdrun wh
e
n GPU
s
a
nity check detects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szilár
d
Páll
Remove barriers
p
reventin
g
texture
r
eferenc
e
races
commit
|
commitdiff
|
tree
2018-02-12
Szi
l
árd Páll
Remove single/multi compilation unit switc
h
ing logic
commit
|
commitdiff
|
tree
2018-02-12
Sz
i
lárd Páll
Remove
texture
r
eferenc
e
support in the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szilárd Páll
Call GPU profiler reset on separate
PME ranks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
User guide updates to GPU section
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
árd
Páll
Rel
e
ase notes t
w
eaks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Pál
l
In
s
t
a
ll guide u
p
dates
commit
|
commitdiff
|
tree
2018-01-10
S
z
ilárd P
á
ll
Env
i
ronment varia
b
le docs maintena
n
ce
commit
|
commitdiff
|
tree
2017-12-10
Szilárd Páll
Di
s
able def
a
u
l
t
-
o
n
NVML s
u
pp
o
rt in CMa
k
e
commit
|
commitdiff
|
tree
2017-12-06
Sz
i
lárd
P
áll
Impleme
n
t alternating GPU wai
t
commit
|
commitdiff
|
tree
2017-11-28
Szilárd
P
áll
Separate l
o
c
a
l
G
PU NB wait from em
u
lation la
u
n
c
h
commit
|
commitdiff
|
tree
2017-11-28
Sz
i
lárd Páll
Refactor GPU
rollin
g
prune
l
a
u
nch
commit
|
commitdiff
|
tree
2017-11-27
Szilárd
Páll
Time
F
FT/gathe
r
in
m
ixed mode
commit
|
commitdiff
|
tree
2017-11-24
Szilár
d
P
á
ll
Add
GPU sha
r
i
ng
p
ost
-
submi
t
config
commit
|
commitdiff
|
tree
2017-11-23
Szilárd Páll
Move GPU FFT
/
gather laun
c
h after GPU no
n
bon
d
eds
commit
|
commitdiff
|
tree
2017-11-07
S
zilár
d
P
á
l
l
U
se -m
a
vx
2
-mf
m
a instea
d
of -march w
i
th AVX2
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Pál
l
Merge common nbnxn
CUD
A
/Open
C
L GPU wait code-paths
commit
|
commitdiff
|
tree
2017-11-07
Szilárd
P
áll
Add
wallcyc
l
e tim
e
r for the PME GPU F reducti
o
n
commit
|
commitdiff
|
tree
2017-11-07
Sz
i
lárd Páll
Split off
n
b
nxn G
P
U
timing and staging reductio
n
commit
|
commitdiff
|
tree
2017-11-07
Szilár
d
Páll
Deduplic
a
te
CUDA and Ope
n
CL t
i
mer struct
commit
|
commitdiff
|
tree
2017-10-31
Szilárd
P
áll
Fix nstlist
increase
w
arning p
r
int
commit
|
commitdiff
|
tree
2017-10-31
Szilárd
Páll
C
heck CUDA availab
l
e/compil
e
d code comp
a
tibility
commit
|
commitdiff
|
tree
2017-10-31
Sz
i
lárd Pá
l
l
F
ix nstlist i
n
crease
warning print
commit
|
commitdiff
|
tree
2017-10-26
S
zilárd Páll
Reorgani
z
e PME GP
U
launch
commit
|
commitdiff
|
tree
2017-10-23
Szilárd
P
ál
l
E
lim
i
na
t
e some OCL/CUDA code co
d
e du
p
lication
commit
|
commitdiff
|
tree
2017-10-19
Szil
á
rd Páll
D
is
a
ble O
p
enM
P
with clang 3
.
4 post-submit conf
i
g
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
Remove unised Op
e
nC
L
debugging h
e
lpers
commit
|
commitdiff
|
tree
2017-10-12
Szilárd Páll
R
e
move the
s
ize_t fr
o
m th
e
PME gath
e
r CUDA kenels
commit
|
commitdiff
|
tree
2017-10-05
S
zilárd Páll
R
e
factor
sca
l
e
d
b
o
x handl
i
ng for
P
ME/Ewal
d
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
Fix pair list ar
r
ay assertion
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Pá
l
l
Av
o
id
-
Wmissin
g
-prototypes warnings in c
l
ang CUDA b
u
ilds
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
Move Ewald split
t
ing-rela
t
ed c
o
de to ewald-utils
commit
|
commitdiff
|
tree
2017-10-03
Szilárd
Páll
Enable compiling CUDA device code with cl
a
ng
commit
|
commitdiff
|
tree
2017-09-28
Szilá
r
d Pál
l
Corre
c
t mis
p
l
a
ced CUDA ti
m
ing event
record
commit
|
commitdiff
|
tree
2017-09-26
Sz
i
lárd Páll
Rename GPU launch/wait cy
c
le counters
commit
|
commitdiff
|
tree
2017-09-18
Szi
l
árd
Pá
l
l
Minor r
e
factoring o
f
CUDA no
n
-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilárd
P
áll
CUDA 9/Vol
t
a support for the pr
u
ning kernel
commit
|
commitdiff
|
tree
2017-09-12
Szi
l
árd Páll
Merge bran
c
h '
r
e
lease-2
0
16'
commit
|
commitdiff
|
tree
2017-09-11
Szil
á
rd Páll
NVIDIA Volt
a
per
f
ormanc
e
tweaks
commit
|
commitdiff
|
tree
2017-08-29
Szilárd Pál
l
Fix typo and tweak
e
n
v var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilárd Páll
Avoid division
b
y zero i
s
p
r
uning part cal
c
ulation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd
P
á
ll
Add O
p
e
nCL
prun
i
ng
k
ernels and launch/timing logic
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Páll
Improve awkward handli
n
g
of G
M
X_CUDA_
T
ARGET* help
commit
|
commitdiff
|
tree
2017-08-18
Szilárd
P
á
l
l
A
d
d CUDA
p
runing kernels and launch/ti
m
i
ng
logi
c
commit
|
commitdiff
|
tree
2017-07-27
S
zilárd
Páll
Info
r
m user
s
about the
e
n
d of run DLB
s
tate
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Páll
Add ARM
_
NEON_ASIMD post-submit test
commit
|
commitdiff
|
tree
2017-06-21
Szilárd Páll
Re-enable los
t
DD warning + m
i
n
o
r code modernizat
i
o
n
commit
|
commitdiff
|
tree
2017-06-20
Szilá
r
d Páll
R
e-e
n
able
acci
d
entall
y
lost DD warn
i
ng
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
R
efactoring +
c
lar
i
fication
o
f D
L
B state h
a
ndl
i
ng
commit
|
commitdiff
|
tree
2017-06-15
Szilárd Páll
Allow disabl
i
ng the ex
p
licit use of CUDA textures
commit
|
commitdiff
|
tree
2017-06-07
Szilárd Páll
Su
p
press sm_2x deprecation
w
arni
n
g
with CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilá
r
d Pál
l
Add CUDA 8
.
0 + SIMD pre-submi
t
test
commit
|
commitdiff
|
tree
2017-06-02
Szilárd Páll
Add A
R
M
_
NEON post-submit t
e
st
commit
|
commitdiff
|
tree
2017-05-29
Szi
l
árd Páll
Quotes are
cool, typo-free o
n
e
s
are ev
e
n "cooler"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd Páll
Ad
d
basic dox
y
gen for the Verl
e
t
nonbonded modu
l
e
commit
|
commitdiff
|
tree
2017-03-29
S
zilárd Páll
R
efacto
r
CUDA kerne
l
use of tables
commit
|
commitdiff
|
tree
2017-03-29
Szilá
r
d Páll
A
d
d
C
UDA util fu
n
ction for constant loads
commit
|
commitdiff
|
tree
2017-03-25
S
zilárd
P
áll
Conditional tweak in th
e
nonbonded GPU kernel
s
commit
|
commitdiff
|
tree
2017-03-17
Szilárd Páll
All
o
w bypassing OpenC
L
device compat
i
bility check
commit
|
commitdiff
|
tree
2017-03-16
Sz
i
lárd P
á
ll
P
rint code of un
k
nown
O
penCL error
commit
|
commitdiff
|
tree
2017-03-09
Szilárd Páll
F
i
x m
d
ru
n
hanging upon exit with s
e
p PME ranks
commit
|
commitdiff
|
tree
2017-01-24
Szilárd Páll
Remove
unused argument in G
P
U kernels
commit
|
commitdiff
|
tree
2016-12-09
Szilá
r
d Páll
Turn off hwloc support when st
a
t
ic lib found
commit
|
commitdiff
|
tree
2016-11-17
Szilár
d
Páll
Correct k
e
rnel launch
bou
n
d
s
for CUDA
s
m_60
commit
|
commitdiff
|
tree
2016-11-01
S
z
ilá
r
d Páll
Merge
"Merge branch
rele
a
se-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szilárd Páll
GPU-re
l
ated additions to the install/user guide
commit
|
commitdiff
|
tree
2016-10-27
S
z
ilárd Páll
Ma
k
e -cl-fast-relax
e
d-math de
f
ault
commit
|
commitdiff
|
tree
2016-10-26
Szilárd Páll
Add GMX_DISABLE_GPU_T
I
MING env var
commit
|
commitdiff
|
tree
2016-10-09
Szilár
d
Pá
l
l
Corre
c
t kernel
launch bo
u
n
ds
for CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilárd P
á
ll
M
ake A
S
AN/TSAN/MSAN b
u
ild typ
e
s e
a
sier to discover
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
A
d
d PDF
meta
d
ata to the man
u
a
l
commit
|
commitdiff
|
tree
2016-07-08
Sz
i
l
á
r
d Páll
U
s
er guide clarifications
commit
|
commitdiff
|
tree
2016-07-07
S
zilárd Páll
Add user guide i
n
fo
o
n CUDA applica
t
i
on clocks
commit
|
commitdiff
|
tree
2016-07-05
Sz
i
lárd Páll
Document GMX_GPU_AP
P
LICATION_C
L
OCKS
commit
|
commitdiff
|
tree
2016-07-04
S
z
ilárd
Páll
Disabl
e
NVID
I
A JI
T
c
ache with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
Szilárd Páll
Fix CUDA build with mu
l
t
ipl
e
compilat
i
on
u
nits
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Páll
Add
support fo
r
CU
D
A CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Pál
l
Add
e
nv
.
var
.
to e
n
ab
l
e OpenCL caching
commit
|
commitdiff
|
tree
2016-06-02
Szilá
r
d Páll
Fix OpenCL binary cache fi
l
e name ge
n
erati
o
n
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Remo
v
e
CUDA
h
os
t
compiler co
n
siste
n
cy checks
commit
|
commitdiff
|
tree
2016-04-28
Szilárd Páll
Workaround for
g
c
c
false positive warning
commit
|
commitdiff
|
tree
2016-04-27
Szilárd
Páll
Fix multipl
e
MPI ra
n
k
s
per node with
O
penCL
commit
|
commitdiff
|
tree
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