repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
Fix C++11 library check's thread dependency
2017-09-04
T
eemu Murtola
I
ntroduc
e
self-pairs search in nbsearch
commit
|
commitdiff
|
tree
2017-09-04
Tee
m
u Murtola
Refa
c
t
o
r analysi
s
nbsearch tests
commit
|
commitdiff
|
tree
2017-08-21
Teemu M
u
rtola
Sim
p
le
union-fi
n
d s
t
ruc
t
u
r
e
commit
|
commitdiff
|
tree
2017-07-19
Teemu Murtol
a
Pr
u
n
e
u
n
ne
c
essary
cells in anal
y
sis
n
bsearch
commit
|
commitdiff
|
tree
2017-07-17
Teemu M
u
r
t
o
la
F
i
x
hwloc detection
commit
|
commitdiff
|
tree
2017-07-11
Teem
u
Murt
o
la
Supp
o
rt sc
o
ped key
-
valu
e
tree t
r
ansform
rule
s
commit
|
commitdiff
|
tree
2017-07-06
T
e
e
mu Murtola
Detect u
n
known
mdp
o
ptions in g
m
x dump
/
chec
k
commit
|
commitdiff
|
tree
2017-06-30
Teemu Murtola
Fix
b
o
olean serialization
commit
|
commitdiff
|
tree
2017-06-30
Teemu
M
urtola
Extend key
-
v
alue
t
ree compariso
n
a
nd te
s
ts
commit
|
commitdiff
|
tree
2017-06-29
Tee
m
u Murtola
Genera
l
i
ze IFor
c
eProvider
commit
|
commitdiff
|
tree
2017-06-28
Teemu
M
u
rt
o
l
a
Ext
e
nd key-valu
e
tree se
r
i
a
lization
and te
s
ts
commit
|
commitdiff
|
tree
2017-06-27
T
e
emu Murtola
Do not use conf-man
.
py for non-manpage doc bui
l
ds
commit
|
commitdiff
|
tree
2017-05-29
Tee
m
u Murtola
Avoid some incorre
c
t behavior with gmx solvate
commit
|
commitdiff
|
tree
2017-05-29
Teemu Mur
t
ola
Remove pbcutil <
-
> mdtyp
e
s
c
yclic depende
n
cy
commit
|
commitdiff
|
tree
2017-05-11
Teemu Mu
r
tola
General
i
z
e
command-lin
e
test out
p
ut file checking
commit
|
commitdiff
|
tree
2017-04-17
Teemu Murtola
Consistent approa
c
h for w
h
ole-program test
s
commit
|
commitdiff
|
tree
2017-04-11
Te
e
mu Murtola
Impro
v
e
key
-
value
t
r
e
e gm
x
dump support
commit
|
commitdiff
|
tree
2017-04-06
Teemu Murtola
Fix memory acc
e
ss issues
i
n gm
x
s
ol
v
ate
commit
|
commitdiff
|
tree
2017-04-06
T
e
emu Murtola
Consistent
n
a
mi
n
g for g
m
xana tests
commit
|
commitdiff
|
tree
2017-04-04
Teemu
Mu
r
to
l
a
Utility function
s
for forma
t
tin
g
s
t
r
ing values
commit
|
commitdiff
|
tree
2017-03-13
Teemu M
u
rtola
I
mprove o
p
tion
s
u
pport & te
s
ts for key-value
t
rees
commit
|
commitdiff
|
tree
2017-03-13
T
e
e
m
u Murto
l
a
R
emove
manua
l
alig
n
ment from InMemorySeriali
z
er
commit
|
commitdiff
|
tree
2017-03-12
Teemu Murtola
Cons
i
stent
TextWriter trail
i
ng w
h
itespa
c
e handling
commit
|
commitdiff
|
tree
2017-03-11
T
e
em
u
M
urtola
Upda
t
e c
o
pyright yea
r
for gmx -v
e
rsion
commit
|
commitdiff
|
tree
2017-03-04
Teemu Murtola
Remove
MDModules use from mdlib
commit
|
commitdiff
|
tree
2017-03-04
Teem
u
Mu
r
t
o
la
Split
md
modu
l
e facets
to
d
iffe
r
ent
i
nterfaces
commit
|
commitdiff
|
tree
2017-02-28
T
eemu Murtola
M
o
re documen
t
atio
n
f
or k
e
y-
v
alu
e
trees
commit
|
commitdiff
|
tree
2017-02-27
Teem
u
Murt
o
l
a
Decouple t_inputrec fro
m
MDModules
commit
|
commitdiff
|
tree
2017-02-27
Tee
m
u Murtola
Remov
e
modu
l
e
references fr
o
m t_input
r
ec
commit
|
commitdiff
|
tree
2017-02-10
T
e
e
m
u
Murtola
Check log output
in
t
hre
a
d
a
ffin
i
ty t
e
sts
commit
|
commitdiff
|
tree
2017-02-09
Teemu Murtola
Mul
t
i-rank thread affinity tests
commit
|
commitdiff
|
tree
2017-02-09
Teem
u
Murtola
Document key-value tree tr
a
nsfor
m
s and impr
o
ve chec
k
s
commit
|
commitdiff
|
tree
2017-02-09
Teemu Mu
r
tola
Overv
i
ew
docum
e
n
t
ation for new mdp input scheme
commit
|
commitdiff
|
tree
2017-02-08
T
eemu Murtola
G
e
neric KeyValueTree bro
a
dcast
commit
|
commitdiff
|
tree
2017-02-08
Teemu
Mu
r
tola
Generic gm
x
check imp
l
ementati
o
n wi
t
h
K
e
yValueT
r
ee
commit
|
commitdiff
|
tree
2017-02-08
T
eemu
Murtola
Gen
e
ric gmx dump im
p
lem
e
nta
t
ion for
K
eyValueTree
commit
|
commitdiff
|
tree
2017-02-08
Teemu Murt
o
la
Generic tpr handling for el
e
c
t
ric fiel
d
commit
|
commitdiff
|
tree
2016-12-12
Teemu Murt
o
la
M
e
rge branch release-20
1
6
commit
|
commitdiff
|
tree
2016-12-10
Teemu
Murtola
M
inor
CMa
k
e c
l
ean
u
p
&
mode
r
n
i
zation
commit
|
commitdiff
|
tree
2016-12-10
Teemu Murtola
Bui
l
d scr
i
pts
f
o
r
im
p
rov
e
d release workflow
commit
|
commitdiff
|
tree
2016-12-08
Teemu
M
urt
o
la
Fix and clea
n
up han
d
ling o
f
some
linki
n
g
commit
|
commitdiff
|
tree
2016-12-08
Teemu Murtola
Fix pos
s
ible memory
error with lo
n
g selections
commit
|
commitdiff
|
tree
2016-12-07
Teemu Murtola
Fix use o
f
pos
i
tion
v
aria
b
l
es w
i
th
p
lus/
m
erge
commit
|
commitdiff
|
tree
2016-11-29
Teemu Murtol
a
Additional sel
e
ction help
commit
|
commitdiff
|
tree
2016-11-06
Teemu Mur
t
ola
Add
sele
c
tion-
e
nabled gmx traj
commit
|
commitdiff
|
tree
2016-10-30
T
e
emu Murtola
S
u
pport
normali
z
ing values in Key
V
alueT
r
ee
commit
|
commitdiff
|
tree
2016-10-24
T
eemu Murtola
Electri
c
field md
p
par
s
in
g
using options
commit
|
commitdiff
|
tree
2016-10-24
Teem
u
Mur
t
ola
Su
p
po
r
t
for default va
l
ues from Options to KeyValu
e
Tree
commit
|
commitdiff
|
tree
2016-10-21
Teemu Murtola
Clean
up opti
o
n (default) value
a
ccess
commit
|
commitdiff
|
tree
2016-10-19
Teemu M
u
r
tola
Serialization
support
for Ke
y
ValueTree
commit
|
commitdiff
|
tree
2016-10-17
T
e
e
mu Mu
r
tol
a
Support option as
s
ignment from di
f
ferent pre
c
i
s
ion
commit
|
commitdiff
|
tree
2016-10-17
Teemu Mur
t
ola
Add
s
upp
o
rt f
o
r
r
eading values from refdata
commit
|
commitdiff
|
tree
2016-10-16
Teemu Murtol
a
Improved e
r
ro
r
handling for KeyValueTree
o
p
erations
commit
|
commitdiff
|
tree
2016-10-15
Teemu Mur
t
o
la
I
m
prov
e
d address s
a
nitizer support
commit
|
commitdiff
|
tree
2016-10-15
T
e
emu Murtola
W
o
rk a
r
ound memory l
e
ak
in t_state
commit
|
commitdiff
|
tree
2016-10-15
Teemu Murto
l
a
Fix most memory leaks recently introduced
commit
|
commitdiff
|
tree
2016-10-14
Tee
m
u
M
u
r
tola
Use
g
mx_mtop
_
t in selection
s
, part 3
commit
|
commitdiff
|
tree
2016-10-14
Tee
m
u Murt
o
l
a
Use gmx_
m
t
o
p
_
t in selections, part 2
commit
|
commitdiff
|
tree
2016-10-13
Teemu Murtol
a
Use g
m
x_m
t
op_t
in selecti
o
ns, part 2
commit
|
commitdiff
|
tree
2016-10-13
Te
e
mu Mur
t
ola
Add back-mappin
g
to
K
eyValueTr
e
eTransform
commit
|
commitdiff
|
tree
2016-10-13
T
e
e
mu
M
urtola
Update bundled TN
G
commit
|
commitdiff
|
tree
2016-10-13
Tee
m
u Murtola
Getter f
o
r mapped paths from Ke
y
ValueTreeTransfor
m
commit
|
commitdiff
|
tree
2016-10-12
Teemu
M
urtola
Use gmx
_
mtop_t in selecti
o
ns, part 1
commit
|
commitdiff
|
tree
2016-10-12
Teemu Murtola
Wrap sel
.
method evaluat
i
on par
a
meters to st
r
uct
commit
|
commitdiff
|
tree
2016-10-11
Teemu Murtol
a
Suppor
t
concurrent t_topo
l
ogy
and gmx_
m
top_
t
use
commit
|
commitdiff
|
tree
2016-10-11
T
e
e
m
u Mu
r
t
o
la
Check
atom ma
s
s av
a
ilabil
i
ty in selections
commit
|
commitdiff
|
tree
2016-10-05
Teemu Murtola
Support
d
ifferent
key matching in KeyValu
e
Tr
e
eTr
a
nsfor
m
commit
|
commitdiff
|
tree
2016-10-05
Teem
u
Murtola
Merge "
M
er
g
e branch rel
e
a
se-5-1
i
nto release-2016"
.
.
.
commit
|
commitdiff
|
tree
2016-09-24
Teemu
Murtola
Fix de
f
ault n
i
ce level in mdrun-only b
u
i
l
d
commit
|
commitdiff
|
tree
2016-09-12
Teemu M
u
rtola
Fix various memory leak
s
commit
|
commitdiff
|
tree
2016-09-07
Tee
m
u Mu
r
tola
Clean up
C
Test test management
commit
|
commitdiff
|
tree
2016-08-30
T
e
emu Murt
o
la
Basic support for
t
ransforming KeyV
a
lueTre
e
s
commit
|
commitdiff
|
tree
2016-08-27
Teemu Murto
l
a
S
upport KeyValueTree
objects in
r
efdata
commit
|
commitdiff
|
tree
2016-08-18
Teemu Murtola
Chec
k
for unu
s
ed refdata values
commit
|
commitdiff
|
tree
2016-08-18
T
eemu Murtola
Gene
r
ic
s
tructured
key-value tr
e
e
for options
commit
|
commitdiff
|
tree
2016-08-18
Tee
m
u Mur
t
ola
Supp
o
rt for non-string option value assignment
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murtola
Basic support for ar
r
ay-of-structs in option
s
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murtola
Genera
l
ize and
s
implify option
v
alue stora
g
e
commit
|
commitdiff
|
tree
2016-08-17
Teemu
M
urt
o
la
General
i
ze op
t
io
n
section int
e
rnal
s
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murtola
R
eimplement su
b
sections in
Options
commit
|
commitdiff
|
tree
2016-08-04
Teemu Murtola
Fix/improve doc links in
t
emplate/READ
M
E
commit
|
commitdiff
|
tree
2016-08-01
Tee
m
u Murtola
Functi
o
n to
s
p
lit delimited strings
commit
|
commitdiff
|
tree
2016-07-14
T
e
e
mu Mur
t
ola
Use
n
ewer gcc for
c
overage
commit
|
commitdiff
|
tree
2016-07-07
Teemu Mur
t
ol
a
Change
h
a
ndling
f
or miss
i
n
g
r
eleng docs
commit
|
commitdiff
|
tree
2016-06-30
Tee
m
u Murtola
Extract string parsing
routi
n
es to
utility
commit
|
commitdiff
|
tree
2016-06-28
Teemu Mu
r
tola
Split up compare
.
*
commit
|
commitdiff
|
tree
2016-06-27
Teemu Murtola
F
a
ctor
y
for
c
reating t_inp
u
trec
commit
|
commitdiff
|
tree
2016-06-01
Tee
m
u Murtola
Use C+
+
r
e
placem
e
n
t
for md_logging
.
*
commit
|
commitdiff
|
tree
2016-06-01
Teem
u
Mu
r
tola
Basic
C
++ loggin
g
interface
commit
|
commitdiff
|
tree
2016-05-31
Teemu Murtola
I
m
prove make_ndx hel
p
te
x
t
commit
|
commitdiff
|
tree
2016-05-25
Tee
m
u
M
urtola
Suppo
r
t
f
o
r re
a
l MPI unit
tests
commit
|
commitdiff
|
tree
2016-05-24
Teemu Mu
r
tola
Tes
t
s
f
or single-ran
k
thread affinity
setting
commit
|
commitdiff
|
tree
2016-05-21
Teemu M
u
rtola
Pass number
o
f
l
ocal threa
d
s
t
o thread affinity
commit
|
commitdiff
|
tree
2016-05-21
T
e
emu
M
urtola
Allow creating mock HardwareT
o
polog
y
o
bjects
commit
|
commitdiff
|
tree
2016-05-21
Teem
u
M
u
rtola
U
se
o
n
l
y H
a
rd
w
areTopology for thread affinity
commit
|
commitdiff
|
tree
2016-05-21
Teemu
Murtola
Merge
b
ranch release-2016
commit
|
commitdiff
|
tree
2016-05-21
Teem
u
Murtola
Bump version nu
m
bers f
o
r 2
0
17 development
commit
|
commitdiff
|
tree
2016-05-17
Teemu Murtol
a
Fix some thr
e
ad affinit
y
cases
commit
|
commitdiff
|
tree
2016-05-10
Teemu Murtola
Ad
d
itional Jenk
i
ns
d
o
c
umentation
commit
|
commitdiff
|
tree
2016-05-10
Teemu
M
urtola
I
n
clu
d
e releng documentation to developer guide
commit
|
commitdiff
|
tree
next