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Fix C++11 library check's thread dependency
2017-12-06
Szi
l
á
rd Páll
Imple
m
ent a
l
ternating GPU
w
ait
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Páll
Separate local GPU
NB wa
i
t
from emulation la
u
nc
h
commit
|
commitdiff
|
tree
2017-11-28
S
z
i
l
árd Páll
Refactor GPU roll
i
ng prune launch
commit
|
commitdiff
|
tree
2017-11-27
Szilá
r
d P
á
ll
T
i
me FFT/
g
a
t
h
e
r
in mi
x
ed mode
commit
|
commitdiff
|
tree
2017-11-24
Szi
l
árd Pál
l
Add GPU sharing post-submi
t
config
commit
|
commitdiff
|
tree
2017-11-23
Szilárd
Páll
M
o
ve GPU FFT/gather launch
a
fter GPU nonbondeds
commit
|
commitdiff
|
tree
2017-11-07
S
zilá
r
d Páll
Use -mavx2 -mfm
a
instead of -m
a
rch with AVX
2
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
M
e
rge common
n
b
nxn CUDA/OpenCL
GPU wait code-paths
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
Add wallcycle timer for the PME GPU F red
u
ction
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
Spl
i
t
off nbnx
n
GPU ti
m
ing and s
t
aging reduction
commit
|
commitdiff
|
tree
2017-11-07
Sz
i
lárd Páll
Deduplicate CUDA and OpenCL timer
st
r
uc
t
commit
|
commitdiff
|
tree
2017-10-31
Szilárd P
á
ll
Fix nstlist incr
e
ase w
a
rning print
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Chec
k
CUDA a
v
a
ila
b
le/compile
d
c
o
de c
o
mpatibil
i
ty
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Fix ns
t
l
ist increas
e
warning prin
t
commit
|
commitdiff
|
tree
2017-10-26
S
z
ilá
r
d Páll
Reorganize
PME GPU la
u
nch
commit
|
commitdiff
|
tree
2017-10-23
Szi
l
árd Páll
E
l
iminate
some O
C
L/CUDA c
o
de
c
ode d
u
p
l
ication
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Pá
l
l
D
i
sabl
e
OpenMP with clan
g
3
.
4 post-submi
t
conf
i
g
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
Remove unised OpenCL debugging
h
elpers
commit
|
commitdiff
|
tree
2017-10-12
Szilár
d
Pál
l
Re
m
ove the size_t from the
PME
gathe
r
CUDA
k
e
n
els
commit
|
commitdiff
|
tree
2017-10-05
Szi
l
árd Páll
Re
f
actor scaled
b
ox handli
n
g for PME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
S
zi
l
árd Páll
F
ix pa
i
r
l
i
st array asse
r
tion
commit
|
commitdiff
|
tree
2017-10-05
S
z
i
lárd
Pá
l
l
Avo
i
d -Wmissing-prot
o
typ
e
s wa
r
nings in
clan
g
C
U
DA builds
commit
|
commitdiff
|
tree
2017-10-03
Szil
á
rd
Pál
l
Move Ewald
spl
i
tting-relate
d
code to ewa
l
d
-
u
tils
commit
|
commitdiff
|
tree
2017-10-03
Szilár
d
P
á
l
l
Enable c
o
mpiling CUDA device code with clang
commit
|
commitdiff
|
tree
2017-09-28
Szilár
d
Páll
C
o
rrect misplaced CU
D
A timing ev
e
nt r
e
c
o
r
d
commit
|
commitdiff
|
tree
2017-09-26
Szi
l
árd Páll
Rename GPU la
u
nch/wai
t
cyc
l
e co
u
nters
commit
|
commitdiff
|
tree
2017-09-18
Szilárd Pál
l
Minor refacto
r
in
g
of
CUD
A
non-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilárd
Páll
CUDA 9/Volta support for
the
pruning
k
ernel
commit
|
commitdiff
|
tree
2017-09-12
Szi
l
árd
P
áll
Merge
branch 're
l
ease-
2
016'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd Páll
NVIDIA
V
olta performan
c
e tweaks
commit
|
commitdiff
|
tree
2017-08-29
Szilárd
Páll
Fix typo and tweak env var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilár
d
Páll
Avoid d
i
vision
by
z
e
ro i
s
pruning par
t
calculation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd Pál
l
Ad
d
OpenCL pr
u
ni
n
g ke
r
nel
s
and l
a
unch/timing
logic
commit
|
commitdiff
|
tree
2017-08-18
Szil
á
rd Pá
l
l
Improve aw
k
ward handling of GMX_CUDA_
T
A
R
GE
T
* help
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Pál
l
A
d
d
CUDA
pr
u
ning kernels an
d
launch/
t
iming logic
commit
|
commitdiff
|
tree
2017-07-27
Szilárd Páll
I
nfor
m
users about
t
h
e end
o
f run DLB st
a
te
commit
|
commitdiff
|
tree
2017-06-26
Szilárd P
á
l
l
A
dd ARM_
N
E
ON_ASIMD po
s
t-submit tes
t
commit
|
commitdiff
|
tree
2017-06-21
Szi
l
árd P
á
ll
Re-enable lost D
D
warning +
m
in
o
r code
m
ode
r
ni
z
a
tio
n
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Pál
l
Re-enable
a
ccidentally lost DD warn
i
ng
commit
|
commitdiff
|
tree
2017-06-20
Szilá
r
d
Páll
Re
f
a
ctori
n
g + clarif
i
cation of DLB sta
t
e handl
i
ng
commit
|
commitdiff
|
tree
2017-06-15
Szilárd Páll
Allow d
i
sabli
n
g the
explicit use of CUDA textures
commit
|
commitdiff
|
tree
2017-06-07
Sz
i
lárd Páll
S
uppress sm_2x de
p
r
ecation war
n
ing w
i
th CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szil
á
rd Páll
Add CUD
A
8
.
0
+ SIMD
p
re-sub
m
it tes
t
commit
|
commitdiff
|
tree
2017-06-02
Szilárd Páll
Add ARM
_
NE
O
N post
-
su
b
mit
t
es
t
commit
|
commitdiff
|
tree
2017-05-29
Szilár
d
Páll
Quot
e
s are coo
l
,
typo-
f
r
ee
o
nes are
even "cooler"
commit
|
commitdiff
|
tree
2017-05-23
S
zilárd
Páll
Add bas
i
c dox
y
gen
for the Verle
t
n
o
n
bonded module
commit
|
commitdiff
|
tree
2017-03-29
Sz
i
lárd
P
áll
Refacto
r
CUDA kernel use of tabl
e
s
commit
|
commitdiff
|
tree
2017-03-29
Sz
i
lár
d
Páll
Add CUDA util function for
c
onstan
t
l
o
ads
commit
|
commitdiff
|
tree
2017-03-25
Szilárd Pál
l
Conditional twe
a
k in th
e
non
b
o
nd
e
d GPU kernels
commit
|
commitdiff
|
tree
2017-03-17
Szil
á
rd Páll
Allow
b
ypassin
g
O
penCL
device compatibility c
h
eck
commit
|
commitdiff
|
tree
2017-03-16
Sz
i
lárd Páll
Print code of unknown O
p
enCL error
commit
|
commitdiff
|
tree
2017-03-09
Szilárd
P
áll
F
i
x m
d
run han
g
ing upon exit with s
e
p PME ranks
commit
|
commitdiff
|
tree
2017-01-24
Szilárd P
á
ll
Rem
o
v
e
u
nused argument in GPU
ker
n
els
commit
|
commitdiff
|
tree
2016-12-09
Szilárd Pá
l
l
Tu
r
n
off hwloc support
w
hen sta
t
ic lib found
commit
|
commitdiff
|
tree
2016-11-17
Szi
l
árd
P
áll
Correct kerne
l
launch
bounds for CUDA sm_60
commit
|
commitdiff
|
tree
2016-11-01
S
z
ilárd Páll
Merge
"Merge
br
a
nc
h
release-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szilárd P
á
ll
GPU
-
related additions to the in
s
tall/u
s
er guide
commit
|
commitdiff
|
tree
2016-10-27
S
zi
l
ár
d
Páll
Make -cl-fa
s
t
-relaxed-ma
t
h default
commit
|
commitdiff
|
tree
2016-10-26
Szilárd Páll
Ad
d
GMX_DISAB
L
E_GPU_TIMING env var
commit
|
commitdiff
|
tree
2016-10-09
S
z
i
lárd Páll
Corr
e
ct kernel launc
h
b
o
unds for CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilárd Páll
Make
A
S
AN/TSA
N
/
MSA
N
b
u
i
l
d
types easier
to
di
s
cover
commit
|
commitdiff
|
tree
2016-07-08
Szilárd
Páll
Add PDF metadata to the ma
n
ual
commit
|
commitdiff
|
tree
2016-07-08
S
zilá
r
d Pá
l
l
U
s
er guide clarifications
commit
|
commitdiff
|
tree
2016-07-07
Szi
l
árd Páll
Add us
e
r guide info o
n
CU
D
A ap
p
lication cl
o
cks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd Páll
Docume
n
t GMX_GPU_A
P
P
LICATION_CLOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szi
l
á
r
d
Páll
Disable NV
I
DI
A
J
I
T cache
w
ith Open
C
L
commit
|
commitdiff
|
tree
2016-06-14
Szilárd Páll
F
i
x CUDA build with multiple compilation un
i
ts
commit
|
commitdiff
|
tree
2016-06-05
S
z
il
á
r
d Páll
Ad
d
s
up
p
ort for CUDA C
C
6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Sz
i
lá
r
d Pá
l
l
Add env
.
var
.
to enable OpenCL caching
commit
|
commitdiff
|
tree
2016-06-02
S
zi
l
árd Pá
l
l
Fix Ope
n
CL bin
a
r
y cache file name generation
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Remove
C
UDA hos
t
compiler consistency checks
commit
|
commitdiff
|
tree
2016-04-28
Szilárd Pál
l
Work
a
ro
u
n
d
for gcc false positive w
a
rn
i
ng
commit
|
commitdiff
|
tree
2016-04-27
S
z
il
á
r
d
Páll
Fix multiple MPI ranks
p
er no
d
e with OpenCL
commit
|
commitdiff
|
tree
2016-04-26
Szilár
d
Pá
l
l
Fix OpenCL asserti
o
n
commit
|
commitdiff
|
tree
2016-04-19
Szilár
d
Páll
Mo
v
e out CUDA profiler
t
r
i
ggers fr
o
m
N
BNXN
commit
|
commitdiff
|
tree
2016-04-13
Szi
l
árd P
á
ll
Spe
l
li
n
g fixes
commit
|
commitdiff
|
tree
2016-04-13
S
zilár
d
P
á
ll
Do
not cr
e
ate empty man/man7 directory
commit
|
commitdiff
|
tree
2016-04-04
Szil
á
rd Páll
Mark more vari
a
ble
s
a
s
advanced
commit
|
commitdiff
|
tree
2016-03-31
Szilár
d
Páll
refactor CUDA t
e
x
t
ur
e
-base
d
ta
b
le
initializatio
n
commit
|
commitdiff
|
tree
2016-03-31
Szilárd Pá
l
l
Fix multiple
t
MPI ranks p
e
r
O
p
e
n
C
L dev
i
c
e
commit
|
commitdiff
|
tree
2016-03-30
S
zilár
d
Páll
LJ combination r
u
le kernels for OpenC
L
commit
|
commitdiff
|
tree
2016-03-30
Szilá
r
d P
á
ll
Re
-
enable i-a
t
om type loca
l
m
e
m
prefet
c
h
i
n Op
e
nCL
commit
|
commitdiff
|
tree
2016-03-30
S
z
ilár
d
Páll
Describe AMD AP
P
SD
K
3
.
0
issues in the guide
commit
|
commitdiff
|
tree
2016-03-17
Szilárd
Páll
Fixe
d
OpenCL e/fs
h
ift clear k
e
rnel first
in
v
ocation
commit
|
commitdiff
|
tree
2016-02-26
Szilárd Pá
l
l
F
i
x
l
e
f
tover
l
oad(
)
calls
in the s
i
md ut
i
l headers
commit
|
commitdiff
|
tree
2016-02-19
Szilárd Páll
Fix Ope
n
CL table
i
n
terpolatio
n
s of Ewald c
o
r
r
ection
commit
|
commitdiff
|
tree
2016-02-17
Szilár
d
Pál
l
r
eintroduc
e
su
p
ercl interaction mask c
o
nstant
commit
|
commitdiff
|
tree
2016-02-17
Szilárd
P
áll
change macros to const
a
n
ts in G
P
U code
commit
|
commitdiff
|
tree
2016-02-15
Szil
á
rd Páll
Allow
G
M
X_NB_MIN_C
I
=0
t
o be p
a
ssed
commit
|
commitdiff
|
tree
2016-02-11
Szilárd P
á
l
l
R
e-enable LJ-PME +
Lo
r
ent
z
-Bert
h
el
o
t on GP
U
s
commit
|
commitdiff
|
tree
2016-02-08
Szilár
d
P
á
ll
Handle uniformly GMX_OCL_NOGENCACHE
commit
|
commitdiff
|
tree
2016-01-26
Szilárd
P
á
l
l
GPU code
r
e
o
rganization and
tweaks
commit
|
commitdiff
|
tree
2016-01-20
Szilárd
P
áll
Merge
r
emot
e
-
tracking branch 'or
i
gin/release
-
5-1' into
.
.
.
commit
|
commitdiff
|
tree
2016-01-09
Szilá
r
d
P
á
ll
split NBNXN CUD
A
kernels into fo
u
r compi
l
ation units
commit
|
commitdiff
|
tree
2015-10-15
S
zilárd Páll
Add CUDA nvcc
>
=7
.
0
s
upport
commit
|
commitdiff
|
tree
2015-10-15
Szil
á
rd Páll
Correct CUDA ver
s
i
o
n comparisons
commit
|
commitdiff
|
tree
2015-05-06
S
zilár
d
Páll
Merge "Merge releas
e
-
4
-6 int
o
release-5-
0
" into release-5-
0
commit
|
commitdiff
|
tree
2015-04-21
Szilárd Pá
l
l
A
l
low
man
u
ally setting
t
a
r
get GPU arch
i
tectur
e
s
commit
|
commitdiff
|
tree
2015-04-17
Szilárd Páll
define CUDA v
e
rsion
and texobj support in co
n
fig
.
h
commit
|
commitdiff
|
tree
2014-11-29
Szilárd Páll
A
d
d kernel and com
p
iler suport for CC 3
.
7
d
e
vi
c
e
s
commit
|
commitdiff
|
tree
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