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Cleaning up some bad coding practices
2011-11-25
Roland Schulz
Cleaning up some bad coding practices
commit
|
commitdiff
|
tree
2011-10-11
Alexey Shvetso
v
Updated grompp
.
m
d
p
fo
r
tutor/water
commit
|
commitdiff
|
tree
2011-10-11
R
o
l
and Schulz
Fixes MPI_GROUP_EMPTY for tMPI
commit
|
commitdiff
|
tree
2011-10-05
Roland Sch
u
l
z
Onl
y
creat
e
group if part of load communicat
o
r
a
n
d
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
R
o
land
S
chulz
Make sure that ftell works correctly for
f
ile
s
opened
.
.
.
commit
|
commitdiff
|
tree
2011-05-15
Rola
n
d
S
c
hulz
corrected typo: if(er
r
no=EINVAL)
commit
|
commitdiff
|
tree
2011-02-04
R
o
l
and S
c
h
u
lz
u
sing set_mm_ps to ma
k
e pgi h
a
p
p
y
commit
|
commitdiff
|
tree
2010-11-08
Roland S
c
hulz
making error m
e
s
s
age for vm
d
io clearer (
b
ug 598)
commit
|
commitdiff
|
tree
2010-11-04
Roland S
c
h
ulz
prin
t
more information in case of lock e
r
ror
commit
|
commitdiff
|
tree
2010-10-13
Roland Schu
l
z
m
ake sure t
h
a
t
the MANPATH is not set to o
n
ly GMXM
A
NPATH
commit
|
commitdiff
|
tree
2010-10-11
Roland Schulz
fixed sp
e
lling
commit
|
commitdiff
|
tree
2010-10-08
Rola
n
d Sch
u
lz
f
ixe
d
locking of log fi
l
e - broken
b
y d750
b
9ce
commit
|
commitdiff
|
tree
2010-10-07
Rol
a
nd S
c
hulz
added a comment about assumptions of a
l
ig
n
ed
m
e
m
ory
commit
|
commitdiff
|
tree
2010-10-04
Roland Schul
z
fix b
r
oken
c
heck fo
r
d
l
open (by
C
hristoph J
u
ng
h
ans
.
.
.
commit
|
commitdiff
|
tree
2010-10-01
Roland S
c
hulz
fix F
F
T
W
3 interface for
n
on al
i
g
ned
m
emory
commit
|
commitdiff
|
tree
2010-09-30
Ro
l
and Sch
u
lz
m
a
d
e vmdio work wi
t
h older api version (e
.
g
.
v
m
d
1
.
.
.
commit
|
commitdiff
|
tree
2010-09-27
R
ola
n
d
Sch
u
lz
inc
l
ude "error
.
h"
was not n
e
ccessar
y
and caused proble
m
s
.
.
.
commit
|
commitdiff
|
tree
2010-09-26
Roland S
c
hulz
1
)
gmx_
f
io_see
k
wa
s
no
t
r
e
t
u
rning correct re
t
urn v
a
lue
.
.
.
commit
|
commitdiff
|
tree
2010-09-23
Rol
a
nd Schu
l
z
vmdi
o
read
the box but
didn't mark it as beeing read
.
.
.
commit
|
commitdiff
|
tree
2010-09-19
Rol
a
nd Sc
h
ulz
fixed box v
e
ctor read in
vmdio
commit
|
commitdiff
|
tree
2010-08-26
R
o
land Sc
h
ulz
Rev
e
rt "Parenthesis ar
o
und compar
i
sons and no <= or
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
Rolan
d
Schulz
fix logic to co
n
vert GM
X
_INTEGER_BIG
_
ENDIAN
t
o
ARCH_IS_B
I
G_E
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
Roland Schu
l
z
Parenthesis around
c
omparisons
and no
<= or >= for xlc
commit
|
commitdiff
|
tree
2010-08-17
R
o
land Schulz
Use a
l
ways
D
IR_S
E
PARATOR
commit
|
commitdiff
|
tree
2010-08-17
Roland Schulz
Fix two Wind
o
ws futi
l
bug
s
:
commit
|
commitdiff
|
tree
2010-08-17
Rola
n
d Schulz
fixed spel
l
ing
m
i
s
take introduce
d
by 303
d
454
3
commit
|
commitdiff
|
tree
2010-08-06
Roland Schulz
Merge bran
c
h 'r
e
l
e
a
se-4-5-patches' of ss
h
:
/
/
git
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
Rol
a
nd Schulz
cleanup:
GMX_CG_INNERLOOP isn't
u
sed anymore
commit
|
commitdiff
|
tree
2010-08-01
Rolan
d
Schulz
include sys/types before rege
x
f
o
r broken r
e
gex
.
h
commit
|
commitdiff
|
tree
2010-08-01
Roland Schu
l
z
fi
x
spelling
e
tc epc
commit
|
commitdiff
|
tree
2010-08-01
Rola
n
d Schulz
added miss
i
ng in
i
t
ial
i
zation
commit
|
commitdiff
|
tree
2010-07-03
R
ola
n
d S
c
hu
l
z
runt
i
me is only ava
i
lable on P
P
master (simmaster)
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
R
oland Schulz
intia
l
izing structs (to
a
void valgrin
d
error m
e
ssages)
commit
|
commitdiff
|
tree
2010-07-02
Roland Schulz
Initialize
F
FT data
.
S
o
that Valgrind
doesn't complain
commit
|
commitdiff
|
tree
2010-05-11
R
oland Schulz
undo
(
acci
d
e
n
tial) chan
g
e to FFTW_PATI
E
NT
commit
|
commitdiff
|
tree
2010-05-11
Rolan
d
Sch
u
lz
using sta
n
dar
d
GMX names for
rea
l
/comple
x
commit
|
commitdiff
|
tree
2010-05-10
Ro
l
and
S
c
hulz
f
i
x
e
d ret
u
rn for gmx_fft_man
y
_1d*
commit
|
commitdiff
|
tree
2010-05-10
Rol
a
nd
S
c
hulz
Merge branch 'master'
o
f
git@git
.
gromacs
.
org:gro
m
acs
commit
|
commitdiff
|
tree
2010-05-10
Roland Schulz
ignore Ecl
i
pse proje
c
t f
i
l
es
commit
|
commitdiff
|
tree
2010-05-10
R
o
land Schulz
a
lways define MPI_Comm, MPI_R
e
quest, MPI_
G
roup to avoid
.
.
.
commit
|
commitdiff
|
tree
2010-04-06
Rol
a
nd Schulz
use gmx_alloc_alig
n
ed
f
or f
f
t d
a
ta
commit
|
commitdiff
|
tree
2010-03-16
Rolan
d
Sch
u
lz
Compiles
n
ow
in serial
commit
|
commitdiff
|
tree
2010-03-16
Ro
l
and Schulz
+ Re
m
o
v
ed all
FFTW depende
n
cies of FFT5D
commit
|
commitdiff
|
tree
2010-03-16
Roland
S
chulz
c
a
lling gmx_fft for 1D FFTs ins
t
ead
o
f directly calling
.
.
.
commit
|
commitdiff
|
tree
2010-03-15
Rolan
d
Sch
u
lz
d
i
r
e
c
tly ca
l
l fftw fo
r
serial ca
s
e
commit
|
commitdiff
|
tree
2010-03-15
Roland Sch
u
lz
r
emoved memcp
y
for b
o
th no-
M
PI an
d
1
D
decomposit
i
o
n
commit
|
commitdiff
|
tree
2010-03-08
Roland Schulz
c++ fixes
commit
|
commitdiff
|
tree
2010-03-08
Rolan
d
Schulz
checki
n
g whe
t
he
r
d
lop
e
n is
w
o
r
king
w
i
th static l
i
brary
.
.
.
commit
|
commitdiff
|
tree
2010-03-07
Roland Sc
h
u
lz
Me
r
ge branch 'master'
o
f gi
t
@git
.
gromacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-03-02
Roland Schul
z
M
e
r
ge b
r
anch 'release-4-
0
-
p
at
c
h
e
s'
commit
|
commitdiff
|
tree
2010-02-25
Roland S
c
hulz
e
rro
r
message
for -fi
t
rot+trans -pb
c
commit
|
commitdiff
|
tree
2010-02-25
Roland
S
chulz
e
rror mess
a
ge for
-
fit ro
t
+
t
r
a
ns -pbc
commit
|
commitdiff
|
tree
2010-02-08
R
o
land Schulz
fix to FLT_
E
P
SILON
commit
|
commitdiff
|
tree
2010-02-08
Roland Schulz
Merg
e
branch
'
2
dpm
e
' of git@git
.
groma
c
s
.
org:g
r
omacs
.
.
.
commit
|
commitdiff
|
tree
2010-02-08
Ro
l
and Schu
l
z
fixed
C
89 erros, FLT_EPSILON
(thanks
Peter)
commit
|
commitdiff
|
tree
2010-01-18
R
o
land Schu
l
z
corrected:
o
p
ening binary
file with rb+ instea
d
of r+
commit
|
commitdiff
|
tree
2010-01-17
Roland Schul
z
small fix for using wi
t
h fftw tr
a
nsp
o
se
commit
|
commitdiff
|
tree
2010-01-14
R
o
la
n
d Schulz
M
erge b
r
anch
'
2dpme' of git@git
.
gromacs
.
org:gromacs
.
.
.
commit
|
commitdiff
|
tree
2010-01-14
Roland Schul
z
updated comments
commit
|
commitdiff
|
tree
2010-01-14
Roland Schulz
reduced com
m
unication and FFT to amount requi
r
e
d
commit
|
commitdiff
|
tree
2010-01-13
Rol
a
nd Schul
z
Merge branch
'tmp'
i
nto
2dpme
commit
|
commitdiff
|
tree
2010-01-13
Roland Schu
l
z
improved deb
u
gging
o
utput
commit
|
commitdiff
|
tree
2010-01-12
R
o
land Schulz
updat
e
d
a
c
omment to ref
l
ect a
earlie
r
change
commit
|
commitdiff
|
tree
2010-01-07
Roland Schulz
fixed a bug in fft5d only effec
t
ing external test programs
commit
|
commitdiff
|
tree
2010-01-07
Rol
a
nd Schu
l
z
made evendist compile
time op
t
ion also in fft5d
commit
|
commitdiff
|
tree
2010-01-07
Rola
n
d
Schulz
Me
r
ge bra
n
c
h
'
2
dpm
e
' of git@git
.
gr
o
m
a
c
s
.
org:gromacs
.
.
.
commit
|
commitdiff
|
tree
2010-01-05
Roland
S
chulz
equally distribute grid lines
i
f not d
i
v
isabl
e
commit
|
commitdiff
|
tree
2010-01-05
Ro
l
a
nd Schulz
Undo Michael's accident
a
l comm
i
ts w
i
th:
commit
|
commitdiff
|
tree
2009-12-30
Roland
S
chulz
made f
f
t5d c
o
mpile
ou
t
side of GROM
A
CS again
commit
|
commitdiff
|
tree
2009-12-16
Rola
n
d Schulz
Merge commit
'
origin/master' into 2dpme
commit
|
commitdiff
|
tree
2009-12-16
Rolan
d
S
c
hulz
Added CMa
k
e
co
d
e to enable opt
i
on
o
f
buil
d
ing "old
.
.
.
commit
|
commitdiff
|
tree
2009-12-15
Roland S
c
h
u
lz
Merge branch '2dpme' of gi
t
@git
.
g
romacs
.
org:gro
m
acs
.
.
.
commit
|
commitdiff
|
tree
2009-12-15
Roland Schulz
Restored 4?
?
x86_
6
4_sse kernels (neede
d
for FAH)
.
Inst
e
ad
.
.
.
commit
|
commitdiff
|
tree
2009-12-11
Roland Schulz
Adde
d
C
Make code
t
o
en
a
ble option
of bu
i
ldin
g
"old
.
.
.
commit
|
commitdiff
|
tree
2009-12-11
R
oland Schulz
compiling with mpi and c
+
+ -
>
set CXX to MPICC
(as
.
.
.
commit
|
commitdiff
|
tree
2009-12-01
R
ola
n
d S
c
hul
z
u
nion
i
nstead of two
p
ointers to
same
a
ddress (brake
s
.
.
.
commit
|
commitdiff
|
tree
2009-12-01
R
o
l
and
Schulz
file ended twi
c
e in
M
a
kefile by merge
commit
|
commitdiff
|
tree
2009-12-01
R
o
l
an
d
Schulz
Merg
e
branch '2dpme' o
f
git@git
.
gromacs
.
org:
g
romacs
.
.
.
commit
|
commitdiff
|
tree
2009-11-30
Roland Sc
h
ulz
a few m
o
re ffopen/ffc
l
ose
fix
e
s
commit
|
commitdiff
|
tree
2009-11-30
R
o
land Schulz
C++ style
c
o
m
ments -> C
commit
|
commitdiff
|
tree
2009-11-30
Rola
n
d Schulz
clos
e
all f
i
les wi
t
h ffclose w
h
ich are
o
pened with
.
.
.
commit
|
commitdiff
|
tree
2009-11-30
Roland Schulz
full
license text for vmd files
commit
|
commitdiff
|
tree
2009-11-30
Roland
S
chulz
a
dded missing inclu
d
e files
commit
|
commitdiff
|
tree
2009-11-30
Roland Schulz
Merge b
r
a
nc
h
'mast
e
r' of
git@git
.
gromacs
.
or
g
:gromacs
commit
|
commitdiff
|
tree
2009-11-30
Roland Sc
h
ulz
reorganize
d
so tha
t
it is easier to
use vmdplugin
s
.
.
.
commit
|
commitdiff
|
tree
2009-11-30
Roland Schulz
f
ix
of error
in
t
roduce
d
by me doin
g
C++
fixe
s
commit
|
commitdiff
|
tree
2009-11-30
Rola
n
d Schulz
i
s
file still neede
d
? (if so it a
l
so has to
be in
M
a
kefile)
commit
|
commitdiff
|
tree
2009-11-28
Roland Schulz
C++ Fixes
f
o
r -
w
ith-
x
11 -enable-mp
i
commit
|
commitdiff
|
tree
2009-11-27
Roland Schulz
Merge branc
h
'
master' of git@git
.
g
romac
s
.
org:gromacs
commit
|
commitdiff
|
tree
2009-11-27
Roland Sch
u
lz
M
o
re
C+
+
fi
x
es (const
char)
,
some
f
ormating
commit
|
commitdiff
|
tree
2009-11-27
Roland
S
chu
l
z
Merge
bran
c
h
'mas
t
e
r' of
gi
t
@
g
it
.
gr
o
macs
.
org:gromacs
commit
|
commitdiff
|
tree
2009-11-27
Rol
a
nd Schu
l
z
More C++ fixes 2/2: h
e
ader files were not inc
l
uded
.
.
.
commit
|
commitdiff
|
tree
2009-11-27
Rola
n
d Schulz
Merge bran
c
h 'master'
o
f git@git
.
gromacs
.
org:gromac
s
commit
|
commitdiff
|
tree
2009-11-27
Roland Schulz
C++ fixes
part2; extern C fixes
i
n header
files a*
.
.
.
commit
|
commitdiff
|
tree
2009-11-27
Roland
S
chulz
fix to vmdpl
u
gin
commit
|
commitdiff
|
tree
2009-11-26
Rol
a
nd Schulz
c
++
fixes, main
l
y cons
t
char
commit
|
commitdiff
|
tree
2009-11-26
Ro
l
and Schulz
o
nly
allow any file extens
i
o
n for rea
d
ing
o
f traj
e
ctor
i
es
commit
|
commitdiff
|
tree
2009-11-26
Roland
S
chulz
Added VMD molfile plug
i
n suppor
t
to th
e
analysis tools
.
commit
|
commitdiff
|
tree
2009-11-23
Roland Schulz
fixed m
d
5 locking,
r
em
o
ved misleading e
r
ror message
commit
|
commitdiff
|
tree
2009-11-12
spoel
Remo
v
ed strange ch
a
r
a
cters
.
commit
|
commitdiff
|
tree
next