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2016-08-30	Teemu Murtola	Basic support for transforming KeyValueTrees	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Check for unused refdata values	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Generic structured key-value tree for options	commit \| commitdiff \| tree
2016-08-18	Teemu Murtola	Support for non-string option value assignment	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Basic support for array-of-structs in options	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Generalize and simplify option value storage	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Generalize option section internals	commit \| commitdiff \| tree
2016-08-17	Teemu Murtola	Reimplement subsections in Options	commit \| commitdiff \| tree
2016-08-15	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2016-08-15	Mark Abraham	Fixes for BG/Q platform files and install guide	commit \| commitdiff \| tree
2016-08-15	Berk Hess	Reduce FE pair-list memory usage	commit \| commitdiff \| tree
2016-08-12	Mark Abraham	Bump number to prepare for first patch release	commit \| commitdiff \| tree
2016-08-04	Mark Abraham	Version 2016	commit \| commitdiff \| tree
2016-08-03	David van der Spoel	Three new quotes.	commit \| commitdiff \| tree
2016-08-03	Vedran Miletić	Use only legal characters in OpenCL cache filename	commit \| commitdiff \| tree
2016-07-29	Mark Abraham	Improve handling of gmock and gcc6	commit \| commitdiff \| tree
2016-07-29	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-07-29	David van der Spoel	Fixes incorrect charges in OPLS/AA-L for HISD and HISE	commit \| commitdiff \| tree
2016-07-28	Mark Abraham	Add toolchain flags for SSE2 compilation	commit \| commitdiff \| tree
2016-07-21	Mark Abraham	Bumped patch number to prepare for future 5.1.4 release	commit \| commitdiff \| tree
2016-07-14	Mark Abraham	Fix issues with using int for number of steps	commit \| commitdiff \| tree
2016-07-13	Mark Abraham	Version 5.1.3	commit \| commitdiff \| tree
2016-07-12	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2016-07-12	Mark Abraham	Fix trr magic number reading	commit \| commitdiff \| tree
2016-07-11	Mark Abraham	Fix gmx mdrun -membed -ntmpi -1	commit \| commitdiff \| tree
2016-07-11	Erik Lindahl	Fix membed with partial revert of 29943f	commit \| commitdiff \| tree
2016-07-11	Michael Shirts	Fix for incorrectly setting expanded ensemble when...	commit \| commitdiff \| tree
2016-07-11	Mark Abraham	Fix regressiontest download md5sum	commit \| commitdiff \| tree
2016-07-09	Mark Abraham	First 2016 release candidate	commit \| commitdiff \| tree
2016-07-09	Erik Lindahl	Hardware detection clean-up and pre/post-processing	commit \| commitdiff \| tree
2016-07-08	Jochen Hub	Updated g_wham for the new pull setup	commit \| commitdiff \| tree
2016-07-08	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-07-08	David van der Spoel	Introduce fatal error for too few frames in gmx dos.	commit \| commitdiff \| tree
2016-07-08	Mark Abraham	Simplify SIMD compiler flag construction	commit \| commitdiff \| tree
2016-07-08	Erik Lindahl	Add detection for ARMv7 cycle counter support	commit \| commitdiff \| tree
2016-07-07	Mark Abraham	Move consistency check for number of threads	commit \| commitdiff \| tree
2016-07-04	Mark Abraham	Fixes for Power7 big-endian	commit \| commitdiff \| tree
2016-07-04	Szilárd Páll	Disable NVIDIA JIT cache with OpenCL	commit \| commitdiff \| tree
2016-06-30	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-29	Mark Abraham	Refactor sysconf checking	commit \| commitdiff \| tree
2016-06-29	Mark Abraham	Work around glibc 2.23 with CUDA	commit \| commitdiff \| tree
2016-06-28	Berk Hess	Properly reset CUDA application clocks	commit \| commitdiff \| tree
2016-06-28	Mark Abraham	Update to include a gcc 6.1 configuration	commit \| commitdiff \| tree
2016-06-28	Mark Abraham	Fix SIMD configuration management	commit \| commitdiff \| tree
2016-06-27	Mark Abraham	Removed unnecessary inter-simulation signalling	commit \| commitdiff \| tree
2016-06-27	Berk Hess	Use sysconf(_SC_NPROCESSORS_ONLN)	commit \| commitdiff \| tree
2016-06-27	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-24	Berk Hess	Fix Verlet buffer calculation with nstlist=1	commit \| commitdiff \| tree
2016-06-23	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2016-06-23	Berk Hess	More accurate GPU list splitting	commit \| commitdiff \| tree
2016-06-23	Mark Abraham	Allow use of external lmfit package	commit \| commitdiff \| tree
2016-06-23	Mark Abraham	Prevent use of mdrun -maxh -multi	commit \| commitdiff \| tree
2016-06-22	Berk Hess	Updated OpenCLTODOList.txt	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Fix configuration-time cpuinfo code	commit \| commitdiff \| tree
2016-06-22	David van der Spoel	Removed spurious r_ij in force for Morse potential...	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-22	Berk Hess	Add nbnxn pair-list rebalancing	commit \| commitdiff \| tree
2016-06-22	Berk Hess	Remove OpenMP overhead at high parallelization	commit \| commitdiff \| tree
2016-06-22	Berk Hess	Correct GPU pair estimate for list splitting	commit \| commitdiff \| tree
2016-06-22	Mark Abraham	Adjust and document C++11 compiler tests	commit \| commitdiff \| tree
2016-06-20	Mark Abraham	Update pre-submit matrix contents	commit \| commitdiff \| tree
2016-06-19	Berk Hess	Remove warnings on checkpoint mismatch	commit \| commitdiff \| tree
2016-06-19	Mark Abraham	Improve docs for linking stdlibc++ needed by icc	commit \| commitdiff \| tree
2016-06-17	Berk Hess	Remove std::thread::hardware_concurrency()	commit \| commitdiff \| tree
2016-06-17	Vedran Miletić	Report the filename and the line number on failure	commit \| commitdiff \| tree
2016-06-17	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-06-17	Mark Abraham	Fix multi-sim + DD + simple distance restraints	commit \| commitdiff \| tree
2016-06-13	Berk Hess	Handle constraint errors with EM	commit \| commitdiff \| tree
2016-06-10	Mark Abraham	Find python for docs build quietly	commit \| commitdiff \| tree
2016-06-08	Erik Lindahl	Disable static libcudart on OS X	commit \| commitdiff \| tree
2016-06-07	Mark Abraham	Re-add support for linking against external TinyXML-2	commit \| commitdiff \| tree
2016-06-07	Mark Abraham	Updates to documentation	commit \| commitdiff \| tree
2016-06-07	Berk Hess	Fix data race in hwinfo with thread-MPI	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Fix compatibility with older CMake	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Make more CMake variables advanced	commit \| commitdiff \| tree
2016-06-02	Mark Abraham	Ignore stderr when detecting SIMD and build info	commit \| commitdiff \| tree
2016-05-31	Mark Abraham	Fix reference to vmdio.c to be vmdio.cpp	commit \| commitdiff \| tree
2016-05-31	Mark Abraham	Second 2016 beta release	commit \| commitdiff \| tree
2016-05-31	Berk Hess	Reposition nbnxn filler particles	commit \| commitdiff \| tree
2016-05-31	Berk Hess	Avoid numerical overflow with overlapping atoms	commit \| commitdiff \| tree
2016-05-31	Berk Hess	Add check for finite energies	commit \| commitdiff \| tree
2016-05-28	Roland Schulz	Fix build with clang 3.1+3.2	commit \| commitdiff \| tree
2016-05-27	Mark Abraham	Fix reading of bonded tables	commit \| commitdiff \| tree
2016-05-26	Mark Abraham	New quote	commit \| commitdiff \| tree
2016-05-26	Mark Abraham	Merge branch release-2016	commit \| commitdiff \| tree
2016-05-25	Teemu Murtola	Support for real MPI unit tests	commit \| commitdiff \| tree
2016-05-21	Erik Lindahl	Disable automated FFTW3 builds on Windows	commit \| commitdiff \| tree
2016-05-17	Roland Schulz	Add reference to TopoTools 1.6	commit \| commitdiff \| tree
2016-05-17	Teemu Murtola	Fix some thread affinity cases	commit \| commitdiff \| tree
2016-05-13	Roland Schulz	Don't use abort for fatal errors	commit \| commitdiff \| tree
2016-05-12	Mark Abraham	Merge branch release-5-1 into release-2016	commit \| commitdiff \| tree
2016-05-12	Mark Abraham	GROMACS 2016 beta1 release	commit \| commitdiff \| tree
2016-05-12	Vedran Miletić	Remove static function qualifier in OpenCL kernel utils	commit \| commitdiff \| tree
2016-05-10	Teemu Murtola	Additional Jenkins documentation	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Bump clang static analyzer to version 3.8	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Minor update to sphinx dependency	commit \| commitdiff \| tree
2016-05-10	Teemu Murtola	Include releng documentation to developer guide	commit \| commitdiff \| tree
2016-05-10	Erik Lindahl	Fix precision loss in tabulated normal distribution	commit \| commitdiff \| tree
2016-05-10	Mark Abraham	Facilitate linking with libcxx	commit \| commitdiff \| tree
2016-05-10	Erik Lindahl	Flush streams when not writing newline character	commit \| commitdiff \| tree
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