repo.or.cz
/
gromacs.git
/
search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
log
|
graphiclog1
|
graphiclog2
|
commit
|
commitdiff
|
tree
|
refs
|
edit
|
fork
first
·
prev
·
next
prepareGpuKernelArguments() and launchGpuKernel() are added
2017-10-27
Aleksei Iu
p
inov
Rem
o
ve un
u
sed PME
g
rid d
u
mp debug
functio
n
s
commit
|
commitdiff
|
tree
2017-10-27
Alekse
i
Iu
p
in
o
v
Repla
c
e
a
few a
s
serts with
GMX_ASSERT's
commit
|
commitdiff
|
tree
2017-10-27
Aleks
e
i Iupinov
Rem
o
ve defunct PME initia
l
ization error code return
commit
|
commitdiff
|
tree
2017-10-24
Aleksei
I
upinov
Remove duplicate/outdated
f
unction d
e
claration
commit
|
commitdiff
|
tree
2017-10-24
Aleksei
I
upin
o
v
Move commrec duty checking i
n
to simple getters
commit
|
commitdiff
|
tree
2017-10-23
Aleks
e
i Iupi
n
ov
Correct th
e
page
allocato
r
de
s
c
r
ip
t
i
o
n
commit
|
commitdiff
|
tree
2017-10-22
Aleks
e
i Iupinov
Change PME
G
PU gather reduction argument from boole
a
n
.
.
.
commit
|
commitdiff
|
tree
2017-10-21
Aleksei Iupino
v
Add calls to
t
he P
M
E GPU stages
commit
|
commitdiff
|
tree
2017-10-13
Aleksei Iupinov
Relax
P
M
E spl
i
ne compu
t
a
t
ion t
o
lerance in double p
r
eci
s
ion
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
Al
e
ksei Iupi
n
ov
Remove use
l
ess extern
CUDA texture re
f
erence d
e
clara
t
ions
.
.
.
commit
|
commitdiff
|
tree
2017-10-12
A
l
e
k
sei Iupino
v
Rev
e
rt "
D
rop NB_ from GM
X
_
C
UDA_NB_SINGLE
_
C
OMPILATI
O
N_U
N
IT
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupinov
Fix
clang warnin
g
s for PME CUD
A
ke
r
n
els
commit
|
commitdiff
|
tree
2017-10-11
Al
e
ksei Iupinov
Rel
a
x PME
solving test complex
g
rid
toleran
c
e
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupinov
CUDA 9/Vol
t
a sup
p
ort for PME
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
sei Iupinov
PME solv
i
n
g
-
CUDA k
e
rnel + unit tes
t
s
commit
|
commitdiff
|
tree
2017-10-11
Aleksei Iupinov
PME force
g
ath
e
ring - CUDA kernel
+ un
i
t
tests
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
sei Iupinov
Dr
o
p NB_ from GMX_CUDA
_
NB_SINGLE_COM
P
ILATION
_
UNIT
c
m
a
ke
.
.
.
commit
|
commitdiff
|
tree
2017-10-11
Ale
k
se
i
Iupinov
PME sp
l
ine+sprea
d
CUDA kern
e
l and unit tests
commit
|
commitdiff
|
tree
2017-10-09
Aleksei Iupinov
Remove some u
n
necessary includes from
PME
commit
|
commitdiff
|
tree
2017-10-09
Aleksei Iup
i
nov
PME GPU/CUDA data fram
e
w
ork
.
commit
|
commitdiff
|
tree
2017-10-06
Aleksei Iupinov
Add timi
n
g acc
u
mulation capa
b
ility into
Gpu
R
e
g
ionT
i
mer
commit
|
commitdiff
|
tree
2017-10-04
Aleksei Iup
i
nov
R
e
move
GPU
timi
n
g functio
n
s s
u
pers
e
ded by GpuRegio
n
T
imer
commit
|
commitdiff
|
tree
2017-10-04
Aleksei Iupinov
Add GpuRegi
o
nTimer
c
l
a
ss
commit
|
commitdiff
|
tree
2017-10-03
Aleksei Iupinov
Bring
C
UDA textu
r
e
getters
d
oc
u
mentation up-to
-
d
at
e
commit
|
commitdiff
|
tree
2017-10-03
Aleksei Iupin
o
v
Template/mo
v
e
CUDA texture clean
u
p code from NB CUD
A
.
.
.
commit
|
commitdiff
|
tree
2017-10-03
Aleksei
Iupino
v
Add
W
in
A
PI p
a
ge
s
i
ze q
u
ery for allocator purp
o
ses
commit
|
commitdiff
|
tree
2017-09-26
A
l
e
k
sei
Iupinov
Move CU
D
A
tex
t
ure setup code f
r
om NB CU
D
A module to
.
.
.
commit
|
commitdiff
|
tree
2017-09-22
Al
e
ksei Iupinov
Tem
p
l
ate the CUDA textur
e
setup
code o
n
r
aw v
a
l
ue type T
commit
|
commitdiff
|
tree
2017-09-21
Aleksei Iupinov
Eliminate
u
nused Coul
o
mb corre
c
tion
t
a
ble siz
e
coulomb_ta
b
_size
commit
|
commitdiff
|
tree
2017-09-21
Aleksei Iupinov
Elimi
n
ate d
u
plic
a
te CUDA textur
e
setup co
d
e
commit
|
commitdiff
|
tree
2017-09-18
Aleksei Iupinov
Skip GPU reallocation
of an
empty non-loc
a
l pairlist
commit
|
commitdiff
|
tree
2017-09-14
Aleksei Iup
i
no
v
Fix no
n
-SIMD build
f
ailing
commit
|
commitdiff
|
tree
2017-09-12
Aleks
e
i Iupino
v
Prevent refere
n
ce XML
reader segfaul
t
on nullptr
e
rror
.
.
.
commit
|
commitdiff
|
tree
2017-09-04
Al
e
ksei Iupinov
Mer
g
e "Merge branch r
e
lease
-
5-1 into
r
elease-2
0
1
6
"
.
.
.
commit
|
commitdiff
|
tree
2017-08-31
Alek
s
ei Iupin
o
v
Br
i
ng bac
k
sp
a
ce
lost in co
m
mit e43e83bf
commit
|
commitdiff
|
tree
2017-08-29
Aleksei Iupin
o
v
Remove leftov
e
r funct
i
o
n
dec
l
aration
commit
|
commitdiff
|
tree
2017-08-29
Aleksei Iupinov
Fix typo
commit
|
commitdiff
|
tree
2017-08-29
A
leksei
I
upinov
Allow
p
assing
optional wi
d
t
h
argument into
C
UDA shuffle
.
.
.
commit
|
commitdiff
|
tree
2017-08-29
Alek
s
ei I
u
pinov
Adjust PME LJ solver test i
n
put
co
e
fficient
commit
|
commitdiff
|
tree
2017-08-22
Ale
k
sei Iup
i
nov
Separat
e
PME spread and gathe
r
wallcycle c
o
un
t
er
s
commit
|
commitdiff
|
tree
2017-08-21
Aleksei I
u
pinov
PME solving tests
commit
|
commitdiff
|
tree
2017-08-17
Aleksei Iupinov
Merge "Merge branc
h
release
-
5-1 into r
e
lease-20
1
6"
.
.
.
commit
|
commitdiff
|
tree
2017-06-30
Alek
s
ei Iupinov
Remov
e
outdated cmake
n
v
c
c
l
o
gic
commit
|
commitdiff
|
tree
2017-06-12
Alek
s
ei Iupinov
Store a ph
y
sica
l
node communicator in t_commrec
commit
|
commitdiff
|
tree
2017-03-17
Alek
s
ei
Iupinov
F
ix dereferencing nullptr
i
n PME solve work dest
r
uctor
commit
|
commitdiff
|
tree
2017-03-03
Aleksei Iup
i
n
o
v
Remove outdate
d
CUDA vers
i
on check
commit
|
commitdiff
|
tree
2017-02-21
Aleksei I
u
pi
n
ov
Remove
un
u
sed func
t
ion
c
u_synchstream_at
d
at()
commit
|
commitdiff
|
tree
2017-02-09
Aleksei
I
u
pinov
Add initializ
a
tio
n
to
dvd
l
ambda in bonded
forces tests
commit
|
commitdiff
|
tree
2017-02-09
Aleks
e
i
Iupino
v
Fix typo (Dihedarl -> Di
h
e
d
ral
)
commit
|
commitdiff
|
tree
2017-02-08
A
l
eksei Iupinov
PME
f
orce gathering tes
t
s
commit
|
commitdiff
|
tree
2017-02-08
A
l
eksei
Iupinov
Fix invalid tric
l
inic box in the PME test
d
a
ta
commit
|
commitdiff
|
tree
2017-01-24
Aleksei Iupinov
PME spline computati
o
n and charge spreading tests
commit
|
commitdiff
|
tree
2017-01-24
Aleksei Iupinov
A
d
d const q
u
a
l
ifi
e
r to
s
ome PME s
p
read arguments
commit
|
commitdiff
|
tree
2017-01-19
A
l
eksei Iupinov
Simplify gmx_count_gp
u
_d
e
v_unique
(
)
commit
|
commitdiff
|
tree
2017-01-19
A
l
eksei Iupinov
PME B-Sp
l
ine moduli computation uni
t
test
commit
|
commitdiff
|
tree
2017-01-05
A
l
eksei Iupinov
Fix
c
ompilation w
i
th CMAKE_CXX_F
L
AGS="-Wall
-
W
erro
r
"
commit
|
commitdiff
|
tree
2016-12-22
Aleksei
I
upinov
Remove unused member thread_one
f
rom the PME spl
i
ne
.
.
.
commit
|
commitdiff
|
tree
2016-12-05
A
l
eksei Iupinov
S
t
o
p
including parallel_3
d
fft
.
h in
h
eaders
commit
|
commitdiff
|
tree
2016-12-01
Aleksei Iupinov
Move GPU assi
g
nment functions
i
nto a separate file
commit
|
commitdiff
|
tree
2016-11-21
Aleksei I
u
pinov
Mo
v
e hardcoded PME grid indexin
g
constants into head
e
r
commit
|
commitdiff
|
tree
2016-11-01
A
leksei Iu
p
inov
Remove imatrix
t
ype an
d
related un
u
sed/erron
e
ous code
commit
|
commitdiff
|
tree
2016-10-24
Alekse
i
I
upinov
Tre
a
t
CUDA files
as C++ d
u
ring c
p
pc
h
eck
commit
|
commitdiff
|
tree
2016-10-10
Alekse
i
Iupinov
F
i
x trivi
a
l PME
m
emory leak
s
commit
|
commitdiff
|
tree
2016-09-15
Al
e
ksei Iupinov
M
o
ve
the
P
ME Ewal
d
coefficien
t
s to the
P
ME structure
commit
|
commitdiff
|
tree
2016-09-10
Ale
k
s
e
i Iupinov
F
i
x
PME
d
at
a
destructor not being called
commit
|
commitdiff
|
tree