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Enable ARMPL in the armclang build
2018-12-14
Szilárd
P
áll
Enable ARMP
L
in the
armclan
g
build
commit
|
commitdiff
|
tree
2018-12-13
S
z
ilárd Páll
Document the FP excep
t
ion
i
n cuFF
T
7
.
0
commit
|
commitdiff
|
tree
2018-12-10
Pa
u
l B
a
uer
Disabl
e
gmxapi by defa
u
l
t
commit
|
commitdiff
|
tree
2018-12-05
Berk Hess
Add update g
r
ou
p
s to parallelizati
o
n docs
commit
|
commitdiff
|
tree
2018-12-03
Mark Abr
a
h
a
m
M
ov
e
res
p
onsibility
f
o
r
PM
E
re
d
uc
t
ion to i
t
s mo
d
ule
commit
|
commitdiff
|
tree
2018-11-30
Paul Bauer
R
ecreate
f
lo
w
chart figure
commit
|
commitdiff
|
tree
2018-11-29
Paul
B
auer
Mak
e
Imagemagick a
v
ailabili
t
y
more visib
l
e
commit
|
commitdiff
|
tree
2018-11-22
Paul Bauer
P
r
epare for
20
1
9 rel
e
ase cand
i
date
commit
|
commitdiff
|
tree
2018-11-22
Paul Bau
e
r
GRO
M
ACS 2019 t
h
i
r
d b
e
ta re
l
eas
e
commit
|
commitdiff
|
tree
2018-11-21
Paul Bauer
M
erge branch release-2018 in
t
o releas
e
-2019
commit
|
commitdiff
|
tree
2018-11-16
M
.
Eric Irrga
n
g
Expand gmxapi testing
t
o
inclu
d
e t
h
read-MPI
.
commit
|
commitdiff
|
tree
2018-11-14
Mark
A
b
r
a
ham
More
warning
s
uppressi
o
ns for
Q
MMM code
commit
|
commitdiff
|
tree
2018-11-14
M
.
Eric Irrgang
Note GMXAPI
C
Make
variables and bui
l
d targets
.
commit
|
commitdiff
|
tree
2018-11-12
P
a
ul Bau
e
r
U
p
da
t
e to prepare for
2
0
1
8
.
5 point release
commit
|
commitdiff
|
tree
2018-11-12
Paul Bauer
Version 2018
.
4
commit
|
commitdiff
|
tree
2018-11-09
M
ark Abrah
a
m
Disabled FPE ch
e
ck
i
ng for non-releas
e
builds
commit
|
commitdiff
|
tree
2018-11-06
Paul Bauer
Pr
e
pare for beta3
commit
|
commitdiff
|
tree
2018-11-06
Paul B
a
u
er
GROMACS 2
0
1
9
se
c
ond beta releas
e
commit
|
commitdiff
|
tree
2018-11-05
M
a
rk Ab
r
aham
Re
m
o
ve s
o
urce fil
e
with no
cont
e
n
t
commit
|
commitdiff
|
tree
2018-11-05
Paul Bauer
Fix
n
on asci
i
cha
r
acters in manua
l
references
commit
|
commitdiff
|
tree
2018-11-05
Paul Bauer
Fix forma
t
t
i
ng issue
commit
|
commitdiff
|
tree
2018-11-02
M
a
rk A
b
raham
Q
u
iet u
n
u
s
e
d var
i
abl
e
warnings
commit
|
commitdiff
|
tree
2018-11-01
M
.
Eric Irrgang
Fully defin
e
s
ymb
o
ls in res
t
raintpotentia
l
.
h
commit
|
commitdiff
|
tree
2018-10-30
Mark Abraham
Updates to docs
fo
r
O
p
enCL support
commit
|
commitdiff
|
tree
2018-10-26
Paul Bauer
Fix link formatting
i
n de
v
elo
p
er manu
a
l
commit
|
commitdiff
|
tree
2018-10-26
Paul Ba
u
er
U
p
date user documentation
overvie
w
commit
|
commitdiff
|
tree
2018-10-22
Paul Ba
u
er
P
repare for bet
a
2
commit
|
commitdiff
|
tree
2018-10-22
P
aul B
a
uer
GROMACS 2
0
19 first beta r
e
lea
s
e
commit
|
commitdiff
|
tree
2018-10-18
P
aul Bauer
Remove unused f
i
les in docs/manual
commit
|
commitdiff
|
tree
2018-10-18
Paul Bau
e
r
Fix segmentation
fault in gmx helix
commit
|
commitdiff
|
tree
2018-10-15
M
.
E
ric I
r
r
g
a
ng
Prepa
r
ation for d
e
-duplicatin
g
mdrun
s
e
tup
commit
|
commitdiff
|
tree
2018-10-14
M
.
Eric Irrga
n
g
A
d
d s
o
me "
t
o do"s for MDModules and Impl
.
commit
|
commitdiff
|
tree
2018-10-14
Mark Ab
r
aham
Fix compiler w
a
rnings
commit
|
commitdiff
|
tree
2018-10-11
Mark Ab
r
aham
Open
mdrun
l
og fi
l
e
o
nly on
c
e
commit
|
commitdiff
|
tree
2018-10-10
Paul Ba
u
er
W
r
o
ng
name for repo
r
t-meth
o
ds tool
commit
|
commitdiff
|
tree
2018-10-10
B
e
rk Hes
s
Move pull
o
ut
p
ut
functions to
out
p
ut
.
cp
p
commit
|
commitdiff
|
tree
2018-10-10
Berk Hes
s
Minor refac
t
ori
n
g i
n
bonded
t
hreadin
g
commit
|
commitdiff
|
tree
2018-10-04
Berk Hess
Add not
e
to a
v
oid c
o
nstraints=a
l
l-bonds
commit
|
commitdiff
|
tree
2018-10-03
P
a
ul Bauer
C
hange acceptable precision in minimiz
e
r test
commit
|
commitdiff
|
tree
2018-10-03
M
.
Eric Irr
g
a
n
g
Combine pr
i
vat
e
s
e
ctions of Mdrunner de
f
inition
.
commit
|
commitdiff
|
tree
2018-09-27
Berk Hess
Move maxReferenceTemperatu
r
e(
)
to
i
nputrec
commit
|
commitdiff
|
tree
2018-09-27
Paul Bau
e
r
A
dd m
i
ndist ou
t
put
f
ile check
commit
|
commitdiff
|
tree
2018-09-27
Berk H
e
ss
Improv
e
update
gro
u
p
r
adii
commit
|
commitdiff
|
tree
2018-09-27
Ber
k
H
e
ss
Re
o
rganize RVec scalin
g
functions
commit
|
commitdiff
|
tree
2018-09-26
B
erk Hess
Support
a
t
om groups i
n
nbnxn_
s
ea
r
ch
commit
|
commitdiff
|
tree
2018-09-21
Pasc
a
l Merz
Make CG
L
O_CH
E
CK_NUMBER_OF_BONDED_INTERACTION
S
r
e
quire
.
.
.
commit
|
commitdiff
|
tree
2018-09-20
Paul B
a
u
e
r
Se
p
arate method
s
to
c
reate localtop and t_topolo
g
y
commit
|
commitdiff
|
tree
2018-09-19
M
.
Eric Irrgang
Change names of gmxapi::Ve
r
sion functions
.
commit
|
commitdiff
|
tree
2018-09-19
Mar
k
Abraham
Fi
x
b
ug with
s
t
ate natoms in me
m
bed
commit
|
commitdiff
|
tree
2018-09-14
Paul Bauer
Remove LaTeX fi
l
e writing from
g
mx
check
commit
|
commitdiff
|
tree
2018-09-13
Mark Abraham
Elimina
t
e main
.
h
commit
|
commitdiff
|
tree
2018-09-07
Mark A
b
raham
Separat
e
si
m
ulation datab
a
se used in tests
commit
|
commitdiff
|
tree
2018-09-05
M
.
Er
i
c I
r
r
gang
Adjust l
o
ader pa
t
h r
e
solution
on Mac
O
S X
.
commit
|
commitdiff
|
tree
2018-09-05
M
ark Abraha
m
Be quieter
when
failing to detect
G
PUs
commit
|
commitdiff
|
tree
2018-09-05
Paul B
a
uer
I
m
prove s
t
ab
i
l
ity of
p
arallel documentat
i
o
n
b
uild
commit
|
commitdiff
|
tree
2018-09-03
P
aul Bau
e
r
Fix err
o
r in docu
m
entat
i
o
n
build
commit
|
commitdiff
|
tree
2018-09-03
Kevin Boyd
Correct in
f
o in Berendsen
p
-
couplin
g
mdp opt
i
on
commit
|
commitdiff
|
tree
2018-09-03
Roland Schulz
Red
u
c
e
dupli
c
ation in gp
u
_uti
l
s
commit
|
commitdiff
|
tree
2018-08-28
Pa
u
l Bauer
F
ix docum
e
ntation build
w
i
t
hout imagemagick
commit
|
commitdiff
|
tree
2018-08-23
P
a
ul Bauer
Update to pre
p
are for 2018
.
4 po
i
nt re
l
ease
commit
|
commitdiff
|
tree
2018-08-23
Paul Bauer
V
e
r
sion 2018
.
3
commit
|
commitdiff
|
tree
2018-08-22
M
a
rk A
b
ra
h
am
Perm
i
t PME on GPUs only for dynami
c
al integrators
commit
|
commitdiff
|
tree
2018-08-21
Berk
H
e
ss
Ensure domains are la
r
g
e
enough for atom m
o
tion
commit
|
commitdiff
|
tree
2018-08-01
Paul
Bauer
Fix -skip
o
ption for gmx rms
commit
|
commitdiff
|
tree
2018-07-24
Pa
u
l Bauer
Change
ma
n
ual s
e
ction on restarts w/o checkpoint
commit
|
commitdiff
|
tree
2018-06-08
Paul Bau
e
r
Fix gm
x
solvate
wi
t
h mul
t
iple solvent
molecu
l
e
types
commit
|
commitdiff
|
tree
2018-05-30
Paul Bau
e
r
Disallow use of empty box informatio
n
i
n
solvent files
commit
|
commitdiff
|
tree
2018-04-26
Paul Ba
u
er
Split up topolog
y
s
ection
i
n man
u
al
commit
|
commitdiff
|
tree
2018-04-26
P
a
ul
B
auer
Split up a
l
gor
i
t
hms ma
n
ual page
commit
|
commitdiff
|
tree
2018-04-18
Pau
l
Bauer
R
emove obsolete variable prec
gr
o
fil
e
outpu
t
commit
|
commitdiff
|
tree
2017-12-19
Paul Bauer
R
e
moved -skip
option fr
o
m gmx ener
g
y
commit
|
commitdiff
|
tree
2017-12-11
Paul Bau
e
r
F
ewe
r
messa
g
e
s
wh
e
n -cpi file is
n
ot presen
t
commit
|
commitdiff
|
tree
2017-12-08
Paul Bau
e
r
Add inf
o
rmation regarding xlc
compiler
commit
|
commitdiff
|
tree