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Fix string interpolation error
2020-10-14
Mark Abraha
m
Fix
s
tring interpo
l
ati
o
n
error
commit
|
commitdiff
|
tree
2020-10-14
Mark
Abr
a
ham
Fix bo
n
ded te
s
ts
commit
|
commitdiff
|
tree
2020-10-07
Ma
r
k Abraham
U
pdate to oneAPI
b
e
ta09
commit
|
commitdiff
|
tree
2020-10-02
Mark
A
braham
Cle
a
ned up CUDA comp
i
l
a
t
i
o
n
commit
|
commitdiff
|
tree
2020-10-02
Mark Abraham
Update GoogleTest to v1
.
8
.
1
commit
|
commitdiff
|
tree
2020-09-30
Mark
A
b
raham
Fix w
a
rnin
g
s
is
s
u
e
d
by clang wi
t
h nvcc
commit
|
commitdiff
|
tree
2020-09-28
Ma
r
k Abraham
F
i
x check
f
or BitScanReverse64
commit
|
commitdiff
|
tree
2020-09-25
Mar
k
Abraham
Ensure the modular simulator runs only when it sh
o
ul
d
commit
|
commitdiff
|
tree
2020-09-23
Ma
r
k Abraham
Report name of missi
n
g OpenC
L
kernel
s
commit
|
commitdiff
|
tree
2020-09-23
Mark Abraha
m
P
e
rmi
t
comparison of only first frames
commit
|
commitdiff
|
tree
2020-09-22
Mar
k
A
braham
Split mdr
u
n-test
commit
|
commitdiff
|
tree
2020-09-21
Mark Abr
a
ham
Wro
n
g
logic
was use
d
commit
|
commitdiff
|
tree
2020-09-16
Mark
A
braham
Act
i
vate AMD Ope
n
CL build
i
n relea
s
e matri
x
commit
|
commitdiff
|
tree
2020-09-12
Mark
A
br
a
ham
Fix GPU de
v
i
ce info br
o
adcast with MPI
commit
|
commitdiff
|
tree
2020-08-26
Mark Abraham
Per
m
it
b
uild with
CU
D
A 11
.
0
commit
|
commitdiff
|
tree
2020-08-17
Mark
Abraham
Allo
w
sim
p
ler use of scripted conta
i
n
er buil
d
s
commit
|
commitdiff
|
tree
2020-08-17
Mark A
b
rah
a
m
R
e
s
tore
us
e
o
f
CUDA 11
.
0
in CI
commit
|
commitdiff
|
tree
2020-08-17
Mar
k
Abr
a
ham
Build fewer unnece
s
sary S
I
MD
k
ernels i
n
CI
commit
|
commitdiff
|
tree
2020-08-17
Mark Abraham
Support
oneAPI in
g
itlab
CI
commit
|
commitdiff
|
tree
2020-08-17
M
a
rk Ab
r
aham
Stopped
using images in bioph
y
s
ics Docker repository
commit
|
commitdiff
|
tree
2020-08-17
Mar
k
Abraham
Avoid builds wi
t
h
RelWith
D
ebInfo
commit
|
commitdiff
|
tree
2020-08-17
M
a
rk Abraha
m
Fix isHostMemoryP
i
nned
for change
s
in CUDA 11
.
0
commit
|
commitdiff
|
tree
2020-08-12
M
a
rk Abraham
Revert to CUDA 10
im
a
ge f
o
r CI
commit
|
commitdiff
|
tree
2020-08-08
Mark
A
braha
m
F
i
x typo in docs
commit
|
commitdiff
|
tree
2020-08-07
Mark Abraham
Fix release build war
n
ing
commit
|
commitdiff
|
tree
2020-08-06
Mark
A
braham
K
e
ep all the infra a
n
d the
u
se
r
h
appy
commit
|
commitdiff
|
tree
2020-08-06
Mark Abraham
U
pdate mi
n
i
m
u
m tested
CUD
A
t
o
11
.
0
commit
|
commitdiff
|
tree
2020-07-31
Mark
A
b
r
aham
Move code to pr
e
pare for multi
s
im class
commit
|
commitdiff
|
tree
2020-07-31
Mark Abr
a
ham
Rele
a
se
c
onfigs were us
i
ng a wrong bui
l
d type
commit
|
commitdiff
|
tree
2020-07-31
Mark Abraham
Release co
n
figs were using a wrong build
t
ype
commit
|
commitdiff
|
tree
2020-07-27
M
a
r
k Abraham
Fix
warnings in re
l
ease
b
uil
d
s
commit
|
commitdiff
|
tree
2020-07-27
Mar
k
Abraham
F
ix RD
T
SCP handli
n
g
commit
|
commitdiff
|
tree
2020-07-15
Mark Abraham
Divide def
a
ult communicator from DD communica
t
ors
commit
|
commitdiff
|
tree
2020-07-08
Mark Abraham
Fix issues found with clang-tidy
commit
|
commitdiff
|
tree
2020-06-25
Mark Abraham
Restored the
c
omment
commit
|
commitdiff
|
tree
2020-06-23
Mar
k
Abraham
W
IP: Finish removin
g
compile_cpp_as_cuda
commit
|
commitdiff
|
tree
2020-06-01
M
ark Abraham
F
ix atomic
s
configure te
s
t
commit
|
commitdiff
|
tree
2020-05-29
Ma
r
k Abrah
a
m
Make Cyg
w
in build work
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
Remove b
u
ndled
F
in
d
C
UDA
.
cma
k
e
commit
|
commitdiff
|
tree
2020-04-30
Mark Abraham
Fix compiler flag rep
o
rting
commit
|
commitdiff
|
tree
2020-04-29
Mark Abraham
Updat
e
cmake version for docs
container
commit
|
commitdiff
|
tree
2020-04-29
Mark Abraham
Baseline
c
ommi
t
commit
|
commitdiff
|
tree
2020-04-29
Mar
k
Abraham
Fixed sev
e
r
al clang-t
i
d
y
issues
commit
|
commitdiff
|
tree
2020-04-27
M
a
r
k Abraham
I
mproved some logic in do_force
commit
|
commitdiff
|
tree
2020-04-25
Mark A
b
raham
M
ove c
o
n
figu
r
ati
o
n of gl
o
bal he
a
ders
commit
|
commitdiff
|
tree
2020-04-23
Mark A
b
raham
M
a
r
k
H
WLOC cmake cache v
a
r
ia
b
le
a
s advanced
commit
|
commitdiff
|
tree
2020-04-23
M
ark
Ab
r
a
h
am
Fix
warnin
g
s
for no-mpi bu
i
ld
commit
|
commitdiff
|
tree
2020-04-21
M
a
rk Abraham
Fix warnin
g
s with clang 9
commit
|
commitdiff
|
tree
2020-04-16
Mark Abr
a
ham
Intr
o
duce GMX_USE_SIMD_K
E
RNELS c
m
a
k
e option
commit
|
commitdiff
|
tree
2020-04-14
Mark Abraham
Fix
m
ore clang warnings
commit
|
commitdiff
|
tree
2020-04-13
Mark
Abraha
m
F
ix warnings f
o
r no-mpi build
commit
|
commitdiff
|
tree
2020-04-12
Mark
A
braham
Removed unused variable in force table
g
eneration
commit
|
commitdiff
|
tree
2020-04-12
Mark Abraham
Finish re
m
oving ENCAD
s
hifts
a
nd table gene
r
atio
n
commit
|
commitdiff
|
tree
2020-04-12
M
ark Abraham
U
pdate to clang-
t
idy-9
commit
|
commitdiff
|
tree
2020-04-08
Mark Abraham
Fixes
f
or clang
-
tidy-
9
commit
|
commitdiff
|
tree
2020-04-07
Mar
k
Abraham
Re
p
la
c
e EnumOp
t
ion
w
i
t
h Enum
e
r
a
tionAr
r
ayOption
commit
|
commitdiff
|
tree
2020-04-01
M
ark Abr
a
ham
Fix
m
i
n
o
r
bug with tools tim
e
-unit conv
e
rsions
commit
|
commitdiff
|
tree
2020-03-30
Mark Abraham
Set
buffer
s
ap
p
ropr
i
ately so
.
xpm fi
l
es can be read
.
commit
|
commitdiff
|
tree
2020-03-18
Mark Abraha
m
Fix unused va
r
iable in PME O
p
enCL kernel
commit
|
commitdiff
|
tree
2020-03-18
Mark
A
b
raham
S
i
mplify PME GPU
c
on
s
tants
commit
|
commitdiff
|
tree
2020-03-14
Mark Abra
h
am
Move te
s
ting code to test directory
commit
|
commitdiff
|
tree
2020-03-13
Mark Abraham
Require p
a
dded a
t
om data for PME GPU
commit
|
commitdiff
|
tree
2020-03-09
Mark
Abraham
Co
n
sol
i
d
a
te PME GPU splin
e
infrastructure
commit
|
commitdiff
|
tree
2020-03-06
Mark Abra
h
am
Simplify c
o
mpiling
G
P
U code
f
or tests
commit
|
commitdiff
|
tree
2020-03-05
Mark Abraham
S
i
m
plify PME step
wo
r
kload ma
n
agement
commit
|
commitdiff
|
tree
2020-03-04
M
ark A
b
raham
I
mprov
e
T
PI handling
commit
|
commitdiff
|
tree
2020-02-23
Ma
r
k Abraham
Removed unused PME
gath
e
r
functionali
t
y
commit
|
commitdiff
|
tree
2020-02-18
Mark A
b
ra
h
am
Added more do
c
s
a
nd te
s
t
s
to Enu
m
e
r
ati
o
nArray
commit
|
commitdiff
|
tree
2020-01-27
Mark Abra
h
am
Update s
o
me
nbnxm ke
r
n
el constants to const
e
xpr
commit
|
commitdiff
|
tree
2020-01-27
Mark Abr
a
ha
m
Remove el
e
ment-si
z
e member fields
commit
|
commitdiff
|
tree
2020-01-27
Mark Abrah
a
m
M
ake Nbnxn
G
pu c
l
as
s
with construc
t
or
commit
|
commitdiff
|
tree
2020-01-17
Mark Abraha
m
Regularize nbnxm module d
o
xygen
commit
|
commitdiff
|
tree
2020-01-16
Mark
Abr
a
ham
Make nbn
x
m header
s
mor
e
se
l
f-cont
a
ined
commit
|
commitdiff
|
tree
2020-01-09
Ma
r
k Abraham
C
l
ean up ewa
l
d module internals
commit
|
commitdiff
|
tree
2020-01-09
Mark Abraham
Split lines with many copyright y
e
a
r
s
commit
|
commitdiff
|
tree
2019-12-31
Mar
k
A
braha
m
Avo
i
d 386 O3 code
g
en bug even
m
ore
commit
|
commitdiff
|
tree
2019-12-30
Mar
k
A
b
raham
Tests that veri
f
y seria
l
izer behaviours
commit
|
commitdiff
|
tree
2019-12-30
Ma
r
k Abraham
Re
m
ove
u
se
o
f tuple in
LINCS code for GPU i
m
pl
e
m
e
ntation
commit
|
commitdiff
|
tree
2019-12-28
Mark Abra
h
am
Remove GMX_CYCLECOUNTERS
commit
|
commitdiff
|
tree
2019-12-28
Mark A
b
raham
M
e
rge "Mer
g
e ori
g
in/rele
a
se-2019 into release-202
0
.
.
.
commit
|
commitdiff
|
tree
2019-12-28
Mark
Abrah
a
m
R
emov
e
s
u
pport for
A
RMv7
commit
|
commitdiff
|
tree
2019-12-28
Mar
k
A
b
raham
Stop testi
n
g ARM
v
7
commit
|
commitdiff
|
tree
2019-12-17
Mar
k
Abraham
Fix that tests intended for multiple ranks run that way
commit
|
commitdiff
|
tree
2019-12-14
Mark Abraham
S
implif
y
gmxapi RPATH handling
commit
|
commitdiff
|
tree
2019-12-12
M
ark Ab
r
aham
M
erge "Merge branch 'ori
g
in/r
e
lease-
2
020' into master"
commit
|
commitdiff
|
tree
2019-12-11
Mark
A
b
r
a
ha
m
D
ocument DOMA
I
NDECOMP(cr) co
r
rectly
commit
|
commitdiff
|
tree
2019-12-10
Mark
Abraham
Simplify gmxapi RPATH h
a
ndling
commit
|
commitdiff
|
tree
2019-12-06
Mark Abraham
A
v
oid 386
O3 code
g
en bu
g
commit
|
commitdiff
|
tree
2019-12-06
Mark Abr
a
ham
Provide mor
e
fee
d
b
a
ck w
h
en listed forces
t
ests fail
commit
|
commitdiff
|
tree
2019-12-04
M
a
r
k Abraham
A
dded Op
e
nCL build to relea
s
e mat
r
ix
commit
|
commitdiff
|
tree
2019-12-04
Mark
A
braham
Removed
u
nnecessary link_directories command for gtest
commit
|
commitdiff
|
tree
2019-12-01
Mark Abraham
Further improve
t
askassignm
e
n
t
exception handling
commit
|
commitdiff
|
tree
2019-11-29
Mark
A
braha
m
Merge branch release-2019 into
r
elease-20
2
0
commit
|
commitdiff
|
tree
2019-11-27
Ma
r
k Abrah
a
m
Disab
l
e GPU PM
E
-PP
commu
n
icat
i
o
n
with mdrun -p
m
efft cpu
commit
|
commitdiff
|
tree
2019-11-26
Mark Abraham
Improve handling of task-assignment exceptions
commit
|
commitdiff
|
tree
2019-11-26
Mark Abraham
Re
l
ax tolerance for bd tests
commit
|
commitdiff
|
tree
2019-11-21
Ma
r
k
A
b
raham
Merge branc
h
r
e
leas
e
-
2
020
commit
|
commitdiff
|
tree
2019-11-21
M
ark Abra
h
am
New cool qu
o
te
commit
|
commitdiff
|
tree
2019-11-20
Mark Abraham
Qui
e
t uninitialized variable w
a
rning with clang 9
commit
|
commitdiff
|
tree
2019-11-19
Mark Abraham
Updated re
l
ease notes for CODATA update
commit
|
commitdiff
|
tree
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