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Eliminate some OCL/CUDA code code duplication
2017-10-23
Szil
á
rd Pál
l
Eliminat
e
so
m
e OCL/C
U
DA
c
o
d
e code d
u
pli
c
ation
commit
|
commitdiff
|
tree
2017-10-19
Szilárd P
á
ll
D
i
sable
O
p
e
n
MP with clan
g
3
.
4 post-su
b
mit confi
g
commit
|
commitdiff
|
tree
2017-10-19
Szil
á
rd Páll
Remove u
n
i
sed Op
e
nCL
d
ebugging h
e
lpers
commit
|
commitdiff
|
tree
2017-10-12
S
zilárd
Páll
R
emove
t
h
e size_
t
f
r
om th
e
PME gather CUDA kenels
commit
|
commitdiff
|
tree
2017-10-05
Szi
l
á
r
d Pá
l
l
Refactor
s
c
aled box h
a
ndl
i
n
g
for PM
E
/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szi
l
árd Páll
Fix pair lis
t
ar
r
ay assertion
commit
|
commitdiff
|
tree
2017-10-05
S
z
i
lárd Páll
Avoid
-Wmi
s
sing
-
prototypes warnings in clan
g
CUDA bui
l
ds
commit
|
commitdiff
|
tree
2017-10-03
S
z
il
á
rd Pál
l
M
o
ve Ewal
d
splitting-re
l
ated cod
e
t
o ewald-utils
commit
|
commitdiff
|
tree
2017-10-03
Szi
l
árd Páll
En
a
ble compiling CUDA de
v
i
c
e code with cla
n
g
commit
|
commitdiff
|
tree
2017-09-28
Szilá
r
d Páll
C
orrect misplaced
CUD
A
tim
i
ng ev
e
nt record
commit
|
commitdiff
|
tree
2017-09-26
Szilárd Páll
Rename GP
U
launc
h
/wait
c
ycle c
o
unters
commit
|
commitdiff
|
tree
2017-09-18
Szilárd Páll
Minor refac
t
orin
g
of
CUDA non-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilárd Pá
l
l
CUDA 9/Volta sup
p
ort for the pruning kernel
commit
|
commitdiff
|
tree
2017-09-12
Szilárd Páll
Merge branch 'release-2016'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd Pál
l
NVIDIA Volta per
f
o
rmance tweaks
commit
|
commitdiff
|
tree
2017-08-29
Szilá
r
d Páll
F
ix typo and tweak
env var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilá
r
d Páll
Avoid division by zero is pruni
n
g
p
art calculation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd Páll
Add OpenCL p
r
unin
g
kern
e
l
s
a
n
d l
a
u
nch/ti
m
ing logic
commit
|
commitdiff
|
tree
2017-08-18
Szilárd
P
áll
Improv
e
a
wkward handling of GM
X
_CUD
A
_TAR
G
ET* help
commit
|
commitdiff
|
tree
2017-08-18
Szilárd
Páll
Add CUDA pruning kernels and la
u
nch/timing
l
o
gic
commit
|
commitdiff
|
tree
2017-07-27
S
zilárd Páll
Inform users
abou
t
the end of run DLB st
a
te
commit
|
commitdiff
|
tree
2017-06-26
S
zilár
d
P
á
l
l
Add ARM_N
E
O
N_ASIMD post-
s
ubmit test
commit
|
commitdiff
|
tree
2017-06-21
Szilárd Páll
Re-enable
los
t
DD w
a
rni
n
g +
m
inor code mode
r
nization
commit
|
commitdiff
|
tree
2017-06-20
Szilárd
Páll
Re
-
enable accidentally lost
DD war
n
ing
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Refactoring + clar
i
fication of DLB s
t
ate handling
commit
|
commitdiff
|
tree
2017-06-15
Szi
l
árd Páll
Allow disabling the expl
i
cit use o
f
CUDA textures
commit
|
commitdiff
|
tree
2017-06-07
Szi
l
árd Páll
Suppress
s
m_2x deprecation warning w
i
th CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Páll
Add CUDA 8
.
0
+ SIMD
p
r
e-s
u
b
m
it test
commit
|
commitdiff
|
tree
2017-06-02
Sz
i
lárd P
á
ll
Add ARM_N
E
ON po
s
t-subm
i
t
test
commit
|
commitdiff
|
tree
2017-05-29
Szilár
d
Páll
Quot
e
s are cool,
t
ypo-fr
e
e ones are even
"cooler"
commit
|
commitdiff
|
tree
2017-05-23
Szil
á
rd Páll
Add basic doxygen fo
r
t
h
e Verlet nonbonded module
commit
|
commitdiff
|
tree
2017-03-29
Szilárd
Páll
R
e
factor CUDA
k
ernel use
o
f tables
commit
|
commitdiff
|
tree
2017-03-29
S
z
ilárd Páll
Add CUDA util f
u
nction f
o
r constan
t
loads
commit
|
commitdiff
|
tree
2017-03-25
Szilárd Páll
Con
d
itional tweak
i
n the nonbo
n
ded GPU kernels
commit
|
commitdiff
|
tree
2017-03-17
Szilárd Páll
A
l
low bypassing Open
C
L device
compatibi
l
ity
check
commit
|
commitdiff
|
tree
2017-03-16
Sz
i
l
árd Páll
Pri
n
t code of unknown O
p
e
n
C
L error
commit
|
commitdiff
|
tree
2017-03-09
Szilárd Páll
Fix mdrun
h
anging upon
exit with sep PME
ranks
commit
|
commitdiff
|
tree
2017-01-24
Szilárd
P
áll
Remove unused argument in
G
P
U
ker
n
e
l
s
commit
|
commitdiff
|
tree
2016-12-09
Szilárd Páll
Turn off hwloc suppo
r
t
when sta
t
ic
l
ib f
o
und
commit
|
commitdiff
|
tree
2016-11-17
Szilárd Páll
Correct
kerne
l
l
aun
c
h
b
ounds for C
U
DA sm_60
commit
|
commitdiff
|
tree
2016-11-01
Szilárd Pál
l
Merge "Merg
e
branch release-
2
016"
commit
|
commitdiff
|
tree
2016-10-28
S
z
ilárd Páll
GP
U
-rela
t
e
d addi
t
io
n
s t
o
the
i
n
s
ta
l
l/user guide
commit
|
commitdiff
|
tree
2016-10-27
Szilárd Páll
Make -cl-f
a
st-relaxed-math d
e
fault
commit
|
commitdiff
|
tree
2016-10-26
Szilárd Páll
Add GMX_DISA
B
LE_GPU
_
TI
M
ING env var
commit
|
commitdiff
|
tree
2016-10-09
S
z
ilárd Páll
C
o
rre
c
t kern
e
l
l
aunch bounds for
C
U
D
A sm
_
6
0
commit
|
commitdiff
|
tree
2016-08-27
S
z
ilár
d
Páll
Ma
k
e ASAN/TSAN/MSAN b
u
ild ty
p
es easier to discov
e
r
commit
|
commitdiff
|
tree
2016-07-08
Szi
l
árd Páll
Add P
D
F meta
d
ata to the manual
commit
|
commitdiff
|
tree
2016-07-08
Szil
á
rd Páll
Us
e
r guide
clarif
i
cations
commit
|
commitdiff
|
tree
2016-07-07
Szil
á
rd
P
áll
Add user
g
ui
d
e inf
o
on CUDA app
l
ication clocks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd P
á
ll
Docu
m
en
t
GMX_GPU
_
APPLICATION_CLOCK
S
commit
|
commitdiff
|
tree
2016-07-04
Szi
l
á
r
d
Páll
Disable NVIDIA JIT cac
h
e with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
S
z
ilárd Páll
F
i
x
CUDA
b
u
ild wit
h
multiple
c
ompilati
o
n un
i
ts
commit
|
commitdiff
|
tree
2016-06-05
Szilárd P
á
ll
A
dd
s
uppo
r
t
f
or
CUDA
CC 6
.
0
/
6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szil
á
rd Pál
l
Add env
.
var
.
t
o enabl
e
OpenCL cachi
n
g
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Fix OpenCL bi
n
ary ca
c
he file name generation
commit
|
commitdiff
|
tree
2016-05-05
Szilárd
Páll
Rem
o
ve CUDA
host compiler
c
o
n
sistency c
h
ecks
commit
|
commitdiff
|
tree
2016-04-28
Szilá
r
d Páll
Workaround for gcc false
p
ositi
v
e warn
i
ng
commit
|
commitdiff
|
tree
2016-04-27
Szilárd
P
ál
l
Fix multiple
MPI ranks per node w
i
th O
p
enCL
commit
|
commitdiff
|
tree
2016-04-26
Szilárd Pá
l
l
F
i
x OpenCL
assertion
commit
|
commitdiff
|
tree
2016-04-19
Szilár
d
P
á
ll
Move o
u
t CUDA profile
r
triggers from NB
N
XN
commit
|
commitdiff
|
tree
2016-04-13
Sz
i
lárd Pá
l
l
Spe
l
l
i
n
g
fixes
commit
|
commitdiff
|
tree
2016-04-13
Szilár
d
Pá
l
l
Do not creat
e
empty man/man7
directory
commit
|
commitdiff
|
tree
2016-04-04
Szilárd Páll
Mark more variables as advanced
commit
|
commitdiff
|
tree
2016-03-31
Szilárd
Páll
r
e
facto
r
C
U
DA texture-based tab
l
e initializati
o
n
commit
|
commitdiff
|
tree
2016-03-31
S
z
i
lár
d
Pá
l
l
Fi
x
multiple t
M
PI ran
k
s per Open
C
L d
e
v
i
ce
commit
|
commitdiff
|
tree
2016-03-30
Szilárd
Páll
LJ
c
omb
i
nation
rule
kern
e
ls fo
r
OpenCL
commit
|
commitdiff
|
tree
2016-03-30
Szilár
d
Páll
Re-e
n
able i-atom typ
e
local
mem
p
ref
e
tch in
O
penCL
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
D
esc
r
i
b
e
AMD APPS
D
K 3
.
0 i
s
sue
s
i
n the gui
d
e
commit
|
commitdiff
|
tree
2016-03-17
Szilárd Páll
Fixed OpenCL e/f
s
hift clear k
e
r
n
e
l
first invocation
commit
|
commitdiff
|
tree
2016-02-26
Szilárd
P
á
ll
Fix
l
eftover load()
calls in
t
he simd util headers
commit
|
commitdiff
|
tree
2016-02-19
Szilá
r
d
Pá
l
l
Fix
OpenCL t
a
ble inte
r
polations
of Ewald co
r
rectio
n
commit
|
commitdiff
|
tree
2016-02-17
Szilárd Páll
rei
n
t
r
oduce su
p
erc
l
interaction
mask
c
o
n
s
t
ant
commit
|
commitdiff
|
tree
2016-02-17
Szil
á
rd P
á
ll
c
h
ange macros to constants
i
n GP
U
code
commit
|
commitdiff
|
tree
2016-02-15
Szilárd P
á
l
l
Allow GMX_NB_MI
N
_CI=0 to be passed
commit
|
commitdiff
|
tree
2016-02-11
S
z
ilárd Páll
R
e
-enable LJ-PME + Lorentz-Bert
h
e
lot on GPUs
commit
|
commitdiff
|
tree
2016-02-08
Szilá
r
d
P
áll
Handle uniformly GMX_OCL_
N
O
GENCACH
E
commit
|
commitdiff
|
tree
2016-01-26
Szil
á
r
d
Páll
GPU code reorganiz
a
tion
and twea
k
s
commit
|
commitdiff
|
tree
2016-01-20
Szilárd Páll
Merge remote-tracking branch
'
o
rigin/release-5-1' into
.
.
.
commit
|
commitdiff
|
tree
2016-01-09
S
zilárd Páll
sp
l
it NBN
X
N CUDA kernels
into four
c
ompilation
units
commit
|
commitdiff
|
tree
2015-10-15
Szilárd Páll
Add CUDA nvcc >=7
.
0 support
commit
|
commitdiff
|
tree
2015-10-15
Szilárd Páll
C
orrect CUDA
v
ersion compariso
n
s
commit
|
commitdiff
|
tree
2015-05-06
Szilár
d
Pá
l
l
M
e
rge "
M
erge relea
s
e-4-6 int
o
r
e
lea
s
e-5-0" into re
l
ease-5-0
commit
|
commitdiff
|
tree
2015-04-21
Szilárd Páll
A
l
low manu
a
lly setting target GPU architectures
commit
|
commitdiff
|
tree
2015-04-17
S
zilárd Páll
de
f
i
ne C
U
DA v
e
r
sion and texobj support i
n
c
o
n
f
i
g
.
h
commit
|
commitdiff
|
tree
2014-11-29
S
z
i
lárd Páll
A
dd ker
n
e
l and compil
e
r supo
r
t for CC 3
.
7
d
evices
commit
|
commitdiff
|
tree
2014-11-17
Szilárd
Páll
Allow incre
a
sing CUDA th
r
ead block siz
e
commit
|
commitdiff
|
tree
2014-11-17
Szilárd
Páll
A
dd CUDA
compi
l
er support fo
r
C
C
5
.
0
commit
|
commitdiff
|
tree
2014-11-14
Szilárd Páll
Start nv
p
r
of pr
o
f
i
ling at
counter reset
commit
|
commitdiff
|
tree
2014-09-26
Szilárd Páll
Fix in
c
or
r
ect assert
i
on statement
commit
|
commitdiff
|
tree
2014-09-09
Szi
l
ár
d
Páll
Fix
malformed CUDA vers
i
on macro
check
commit
|
commitdiff
|
tree
2014-06-01
S
zil
á
rd
P
áll
Add quote on the kT-kj/mol co
n
version
factor
commit
|
commitdiff
|
tree
2014-03-11
S
z
ilárd Páll
B
u
m
p
required CUDA ve
r
si
o
n to 4
.
0
commit
|
commitdiff
|
tree
2014-01-28
Szi
l
árd Páll
clarified OpenMP-related things in mdr
u
n
help/man
commit
|
commitdiff
|
tree
2013-11-19
S
z
ilárd Páll
Fix DD
load balanci
n
g bug with GPU sharing
commit
|
commitdiff
|
tree
2013-05-30
S
z
i
l
á
r
d
P
á
l
l
fix u
n
n
ecessary swi
t
ch to polling
GPU wa
i
t
commit
|
commitdiff
|
tree
2013-02-10
Szilárd
P
á
l
l
u
se legacy CUDA no
n
-bo
n
ded kernels on
l
y
o
n
Fermi
commit
|
commitdiff
|
tree
2013-01-18
Szilárd Páll
fix
O
penMP detection on Mac OS br
o
ke
n
by a6fee
0
b
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
a
dded
m
issing cleanup of
some nbn
x
n
_
cuda da
t
a
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Pá
l
l
Merge changes I930b
3
16c,Iea4
2
83e0,I103648f8 i
n
to release-4-6
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
us
e
t
h
e comp
i
ler version pro
v
id
e
d b
y
CMake >=2
.
8
.
9
commit
|
commitdiff
|
tree
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