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Add post-submit with ARM HPC Toolchain
2018-04-21
Szilárd Pá
l
l
Add
post-
s
ubmit with
A
R
M HPC
Too
l
chai
n
commit
|
commitdiff
|
tree
2018-04-21
S
z
i
l
ár
d
Páll
Twea
k
PME
r
un mode check
s
commit
|
commitdiff
|
tree
2018-04-20
S
z
ilárd
Páll
Minor fix for pre-submi
t
matrix docs
commit
|
commitdiff
|
tree
2018-04-19
Szilárd Páll
Move the PME GPU clea
r
ing to t
h
e
e
n
d of
t
he st
e
p
commit
|
commitdiff
|
tree
2018-04-16
S
z
ilárd Páll
Add post-submit test with hwloc off
commit
|
commitdiff
|
tree
2018-04-13
Sz
i
lárd P
á
ll
Use tr
i
val
u
e o
p
tion for GMX_HW
L
OC
commit
|
commitdiff
|
tree
2018-04-05
Szilá
r
d
Páll
Refact
o
r c
j
preload
i
n the no
n
bonded OpenCL kernels
commit
|
commitdiff
|
tree
2018-03-29
Szi
l
árd Páll
Tw
e
ak/enable icc 18 po
s
t-submit
tests
commit
|
commitdiff
|
tree
2018-03-29
S
zilárd Páll
Switc
h
CUDA 9
.
0
/
gcc 5 test to CUDA 9
.
1/g
c
c 6
commit
|
commitdiff
|
tree
2018-03-13
Szil
á
r
d
Páll
Requir
e
O
p
enCL
1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Páll
Fix
c
la
n
g 6
.
0 with
CUDA 9
.
0
commit
|
commitdiff
|
tree
2018-03-12
S
zilárd Páll
Avoid icc-s
p
ecific -march=core-avx2 flag w
i
t
h
gcc/clang
commit
|
commitdiff
|
tree
2018-03-06
Szilárd Páll
E
xt
e
nd
"Finding out how to
r
u
n
mdru
n
better" section
commit
|
commitdiff
|
tree
2018-03-05
Szi
l
árd
Páll
Add to the contributor sec
t
ion
commit
|
commitdiff
|
tree
2018-02-21
Szilár
d
Pá
l
l
Switch pre
-
su
b
m
i
t CUDA
8
.
0
tes
t
t
o 9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Pál
l
Avoid aborting
m
drun when G
P
U
sa
n
ity che
c
k detects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szilárd Páll
R
e
move barriers prev
e
nting text
u
re ref
e
rence rac
e
s
commit
|
commitdiff
|
tree
2018-02-12
Szilárd Pál
l
Remove sin
g
le/multi compilation unit switching
l
ogic
commit
|
commitdiff
|
tree
2018-02-12
Szilá
r
d Pá
l
l
Remove
texture r
e
ference support in the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szilárd
P
áll
C
a
ll
G
P
U
profiler re
s
et on sepa
r
ate P
M
E ranks
commit
|
commitdiff
|
tree
2018-01-10
Szil
á
rd Páll
User guid
e
updates
to G
P
U
s
e
c
ti
o
n
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lárd Pá
l
l
Release notes tweaks
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lárd P
á
ll
Ins
t
all guide upda
t
es
commit
|
commitdiff
|
tree
2018-01-10
Szil
á
r
d
Páll
Environment
v
a
riable do
c
s mainten
a
nce
commit
|
commitdiff
|
tree
2017-12-10
Sz
i
lárd P
á
ll
Disabl
e
def
a
ult-on
NVML support in
CMa
k
e
commit
|
commitdiff
|
tree
2017-12-06
Szi
l
árd Páll
Imple
m
ent alternating
GPU
w
ait
commit
|
commitdiff
|
tree
2017-11-28
S
z
ilá
r
d Páll
Separate
l
ocal GPU NB wait fro
m
emulation l
a
unch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Pál
l
Ref
a
ctor GPU rollin
g
p
ru
n
e
launch
commit
|
commitdiff
|
tree
2017-11-27
S
zilárd Páll
Time FFT/gather
in
m
ixed mode
commit
|
commitdiff
|
tree
2017-11-24
Szil
á
rd
P
áll
Add GPU
s
ha
r
ing po
s
t-sub
m
it confi
g
commit
|
commitdiff
|
tree
2017-11-23
Szil
á
rd Pá
l
l
Move G
P
U
FFT/gather launch
after GPU nonbondeds
commit
|
commitdiff
|
tree
2017-11-07
Szilár
d
Páll
Use -mavx2 -
m
fma instead of -march
w
it
h
AVX2
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
M
erge common nbnxn
C
U
D
A
/Ope
n
C
L GPU wait code-paths
commit
|
commitdiff
|
tree
2017-11-07
S
z
ilárd P
á
ll
Add w
a
ll
c
ycle timer fo
r
t
h
e PME G
P
U F reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd
Páll
Split off
nb
n
x
n
G
P
U timing and sta
g
ing r
e
du
c
tion
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Dedu
p
lica
t
e CUDA
a
nd
O
penCL timer struct
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Fi
x
nstlist increase w
a
rnin
g
p
r
int
commit
|
commitdiff
|
tree
2017-10-31
Szi
l
árd Páll
Check CUDA available
/
c
ompi
l
ed cod
e
c
ompatibility
commit
|
commitdiff
|
tree
2017-10-31
S
z
i
lárd Páll
F
i
x nstlist increase
warning print
commit
|
commitdiff
|
tree
2017-10-26
Szilárd Páll
R
e
o
r
g
anize PME GP
U
launch
commit
|
commitdiff
|
tree
2017-10-23
Szilá
r
d Pál
l
Eliminate some OCL
/
CUDA
code
code duplication
commit
|
commitdiff
|
tree
2017-10-19
Szilár
d
P
á
ll
Disable OpenMP with clang 3
.
4 post-submit c
o
nfig
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
Remove unised O
p
enCL d
e
bugging helpers
commit
|
commitdiff
|
tree
2017-10-12
Sz
i
lá
r
d
Pál
l
Remove the s
i
z
e_t
f
r
om
the PME gat
h
er
CUDA
kenels
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
Refactor scal
e
d box h
a
n
dling for PME
/
Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szilárd P
á
ll
Fix pair list arr
a
y ass
e
r
tion
commit
|
commitdiff
|
tree
2017-10-05
Szilárd
Pá
l
l
A
v
oid -Wmissin
g
-prototypes warnings in
clang CUDA bu
i
lds
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
M
ove Ewald splitti
n
g
-related
code to ewald-utils
commit
|
commitdiff
|
tree
2017-10-03
S
z
ilárd P
á
ll
Ena
b
le compili
n
g CUDA devic
e
co
d
e w
i
th c
l
ang
commit
|
commitdiff
|
tree
2017-09-28
Szi
l
árd Pál
l
C
o
r
rect
m
isp
l
aced CUDA
timing event
r
ecord
commit
|
commitdiff
|
tree
2017-09-26
Szilárd
P
áll
Rena
m
e GPU launc
h
/wait cycle counter
s
commit
|
commitdiff
|
tree
2017-09-18
Szi
l
árd Páll
Min
o
r re
f
actoring of CUDA non-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilá
r
d Páll
CUDA 9/Volta support
f
o
r
the pruning kernel
commit
|
commitdiff
|
tree
2017-09-12
Szil
á
rd
P
á
l
l
Merge branch
'
r
e
lease
-
2016
'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd
Páll
NVIDIA Volt
a
performance tweaks
commit
|
commitdiff
|
tree
2017-08-29
S
zilárd P
á
ll
Fix typo and tweak env var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilár
d
P
á
ll
Avo
i
d division by
zero
i
s p
r
uning part
cal
c
u
l
ation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd
P
áll
Add OpenCL pr
u
ning
k
e
r
ne
l
s and launc
h
/timing logic
commit
|
commitdiff
|
tree
2017-08-18
Szil
á
r
d
P
á
l
l
I
mp
r
ove aw
k
war
d
handli
n
g
of GMX_C
U
DA_TARGET* hel
p
commit
|
commitdiff
|
tree
2017-08-18
Szilárd
Páll
Add CUDA pru
n
i
n
g
k
ernels and
launch/
t
iming logic
commit
|
commitdiff
|
tree
2017-07-27
Szilár
d
Páll
In
f
o
r
m users abou
t
the end of run
DLB state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Páll
Add A
R
M_N
E
ON_ASIMD post-su
b
mit test
commit
|
commitdiff
|
tree
2017-06-21
S
zilárd Páll
Re-enable lost DD warning + minor code
m
odernization
commit
|
commitdiff
|
tree
2017-06-20
Szilárd
Páll
Re
-
enable accident
a
lly lost DD w
a
r
nin
g
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Refactoring + clarificat
i
on of
D
L
B state handling
commit
|
commitdiff
|
tree
2017-06-15
Szi
l
árd Páll
Allow
d
isabling the e
x
pli
c
it use of
C
U
DA t
e
xture
s
commit
|
commitdiff
|
tree
2017-06-07
S
z
ilár
d
Páll
Suppress sm_2x dep
r
ecat
i
on warni
n
g
w
ith
CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Páll
Add C
U
DA 8
.
0 + SI
M
D p
r
e-su
b
mit test
commit
|
commitdiff
|
tree
2017-06-02
Szilárd Páll
A
dd ARM_NEO
N
post-submit test
commit
|
commitdiff
|
tree
2017-05-29
Szi
l
árd Páll
Q
u
otes are cool, typo-free ones are even "cooler
"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd Páll
Add basic doxygen for the Verl
e
t nonbonded module
commit
|
commitdiff
|
tree
2017-03-29
Szilárd Páll
Refactor CUDA
k
e
rnel use o
f
ta
b
l
es
commit
|
commitdiff
|
tree
2017-03-29
Sz
i
lárd Páll
Add
C
U
D
A uti
l
functio
n
for constant loads
commit
|
commitdiff
|
tree
2017-03-25
Szilárd
P
ál
l
C
onditional t
w
e
ak in the nonb
o
nded GPU kernels
commit
|
commitdiff
|
tree
2017-03-17
Szilárd
P
áll
Allow byp
a
ssing Open
C
L
device c
o
mpatibility
c
heck
commit
|
commitdiff
|
tree
2017-03-16
Szilárd Páll
Print
code of
unkno
w
n OpenCL erro
r
commit
|
commitdiff
|
tree
2017-03-09
S
zilárd Páll
Fix mdr
u
n hanging upon
exit
w
ith sep PME rank
s
commit
|
commitdiff
|
tree
2017-01-24
Szilárd Páll
Remove unused argument in G
P
U kernels
commit
|
commitdiff
|
tree
2016-12-09
Szilárd Páll
Turn off hwloc suppor
t
when stat
i
c l
i
b fo
u
nd
commit
|
commitdiff
|
tree
2016-11-17
Szil
á
rd Páll
Correct
k
ernel
l
aunch boun
d
s
f
or CUD
A
s
m
_60
commit
|
commitdiff
|
tree
2016-11-01
S
z
i
l
árd Páll
Merge "Merge bran
c
h
r
elease-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szilá
r
d
Pá
l
l
GPU-r
e
lated additions to the
i
nstall/user g
u
ide
commit
|
commitdiff
|
tree
2016-10-27
Szilárd
Páll
Ma
k
e -
c
l-
f
ast-r
e
laxed
-
m
a
th
default
commit
|
commitdiff
|
tree
2016-10-26
S
zilárd Pá
l
l
Add GMX_
D
ISABLE_GPU_
T
IMING en
v
var
commit
|
commitdiff
|
tree
2016-10-09
S
zi
l
ár
d
P
á
ll
Correct
k
e
rnel
l
aunc
h
bou
n
ds for CU
D
A sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilárd Páll
Mak
e
ASA
N
/TSAN/MS
A
N build
t
ypes ea
s
ier to d
i
scover
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
Ad
d
PDF me
t
adata to
th
e
manual
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
Us
e
r guide
cl
a
r
i
fi
c
ations
commit
|
commitdiff
|
tree
2016-07-07
S
z
ilárd Páll
Add
u
ser
guide info on
C
UDA ap
p
lication clocks
commit
|
commitdiff
|
tree
2016-07-05
Szil
á
rd
Páll
Document GMX_GPU_APPLICATION_CLOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd Páll
Disable NVIDIA JIT ca
c
he with
O
penCL
commit
|
commitdiff
|
tree
2016-06-14
S
zilárd
P
áll
F
ix
C
UDA build wi
t
h multi
p
le compilati
o
n
u
n
its
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Páll
A
dd s
u
pport for CUDA CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szi
l
árd Páll
Ad
d
env
.
var
.
t
o
en
a
b
l
e OpenCL
ca
c
hing
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Fix
O
pen
C
L b
i
nary cache
f
il
e
name gener
a
ti
o
n
commit
|
commitdiff
|
tree
2016-05-05
S
zilá
r
d P
á
ll
R
emove CUDA h
o
st compi
l
er consistency chec
k
s
commit
|
commitdiff
|
tree
2016-04-28
Szilárd Pál
l
Workar
o
und
for gcc false positive warni
n
g
commit
|
commitdiff
|
tree
2016-04-27
Szil
á
rd P
á
ll
Fix mu
l
t
i
ple
M
P
I ranks per node with O
p
enCL
commit
|
commitdiff
|
tree
2016-04-26
S
z
i
l
ár
d
P
áll
Fix OpenCL assertion
commit
|
commitdiff
|
tree
2016-04-19
Sz
i
l
ár
d
Páll
Move out CUDA pr
o
f
i
ler
t
riggers from
N
BNXN
commit
|
commitdiff
|
tree
next