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Add post-submit with ARM HPC Toolchain
2018-04-21
Szilárd Pál
l
Add p
o
st-sub
m
i
t
w
ith ARM HPC
T
o
o
l
chain
commit
|
commitdiff
|
tree
2018-04-21
Szilár
d
P
áll
Tweak PME run mode che
c
k
s
commit
|
commitdiff
|
tree
2018-04-20
S
zilárd Páll
Minor fix for
p
r
e
-submit m
a
trix
docs
commit
|
commitdiff
|
tree
2018-04-19
Szi
l
árd Pál
l
M
o
ve the PME
G
P
U
clearing to the end of th
e
s
t
ep
commit
|
commitdiff
|
tree
2018-04-16
Szilárd Pá
l
l
Add post-sub
m
it test with h
w
loc off
commit
|
commitdiff
|
tree
2018-04-13
Sz
i
lárd
P
áll
U
s
e
trivalu
e
op
t
ion for GMX_HWL
O
C
commit
|
commitdiff
|
tree
2018-04-05
S
zilárd
Pál
l
Ref
a
ct
o
r cj preload in the
nonbonded Ope
n
CL kerne
l
s
commit
|
commitdiff
|
tree
2018-03-29
Szil
á
rd Páll
Twe
a
k/e
n
able icc 1
8
p
ost-submit tests
commit
|
commitdiff
|
tree
2018-03-29
Szilárd Páll
Swi
t
ch
C
U
D
A
9
.
0/gcc
5
test t
o
CUDA 9
.
1/gcc 6
commit
|
commitdiff
|
tree
2018-03-13
Szilár
d
Páll
Require OpenCL 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
S
z
i
lárd Páll
Fix clang 6
.
0
w
i
th CUDA
9
.
0
commit
|
commitdiff
|
tree
2018-03-12
Szilárd Páll
Avoid i
c
c-spe
c
ific -
m
arc
h
=
c
ore-avx2
f
la
g
w
it
h
gcc/clan
g
commit
|
commitdiff
|
tree
2018-03-06
Szil
á
rd Páll
E
xtend "Fi
n
ding
o
ut how to run mdrun better
"
secti
o
n
commit
|
commitdiff
|
tree
2018-03-05
Szilárd Páll
Add
t
o
t
he
contributor
s
e
c
ti
o
n
commit
|
commitdiff
|
tree
2018-02-21
Szilárd Páll
Switch pre-submit CU
D
A
8
.
0
test
t
o
9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Páll
Avo
i
d
abo
r
ting mdrun
w
hen GPU sanity c
h
eck detects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szilárd Páll
Remov
e
barriers preve
n
ti
n
g t
e
xture referen
c
e r
a
ces
commit
|
commitdiff
|
tree
2018-02-12
Szilárd P
á
ll
Remov
e
single/
m
ulti compilat
i
on unit s
w
itching logic
commit
|
commitdiff
|
tree
2018-02-12
Szilárd Páll
Remo
v
e
texture reference support in the CU
D
A
commit
|
commitdiff
|
tree
2018-01-12
Szilá
r
d P
á
ll
Call GPU profiler re
s
et on s
e
pa
r
ate PME ranks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd P
á
l
l
User guide updates to GPU
s
e
ct
i
o
n
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
árd Páll
R
ele
a
se notes t
w
eaks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Install guide updates
commit
|
commitdiff
|
tree
2018-01-10
S
z
ilár
d
P
áll
E
n
vironment variable docs mainte
n
ance
commit
|
commitdiff
|
tree
2017-12-10
Szilár
d
Pá
l
l
Disa
b
le default-on NVML support
i
n CMake
commit
|
commitdiff
|
tree
2017-12-06
Szilárd Pál
l
Implement alternating G
P
U
wait
commit
|
commitdiff
|
tree
2017-11-28
S
zilárd Pá
l
l
Separate loc
a
l
GPU NB wait from emul
a
tion launch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Pá
l
l
Refactor GPU
r
olling prune launch
commit
|
commitdiff
|
tree
2017-11-27
Szilá
r
d Páll
Time FFT/gather
i
n mixed mod
e
commit
|
commitdiff
|
tree
2017-11-24
Szilárd P
á
ll
Add GP
U
s
h
ar
i
ng p
o
s
t-submit config
commit
|
commitdiff
|
tree
2017-11-23
S
z
ilárd Páll
M
ove GPU FFT/gath
e
r launch after GPU
n
onbondeds
commit
|
commitdiff
|
tree
2017-11-07
S
zi
l
á
r
d
P
áll
Use -mavx2 -mfma instead of -march with AVX2
commit
|
commitdiff
|
tree
2017-11-07
S
zilárd Páll
Merg
e
c
ommon nb
n
x
n
CUDA/OpenCL GPU w
a
it
code-paths
commit
|
commitdiff
|
tree
2017-11-07
Sz
i
lárd
P
áll
Add wallcycle timer for the PME GPU F reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Spl
i
t off nbnxn GPU timing
a
nd stag
i
ng reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd
P
áll
Ded
u
p
licate CUDA and OpenCL tim
e
r struct
commit
|
commitdiff
|
tree
2017-10-31
Szil
á
r
d
Pá
l
l
Fix
nstlis
t
inc
r
ease warning print
commit
|
commitdiff
|
tree
2017-10-31
Szi
l
árd Páll
C
h
eck
C
UDA available/compiled
c
o
de compa
t
ibility
commit
|
commitdiff
|
tree
2017-10-31
Szilárd
P
áll
Fi
x
n
s
tlist incre
a
se warn
i
ng p
r
i
nt
commit
|
commitdiff
|
tree
2017-10-26
Szil
á
r
d
Pá
l
l
Reorganize
PME GPU
l
aun
c
h
commit
|
commitdiff
|
tree
2017-10-23
Szilár
d
Páll
Eliminate some
OCL/CU
D
A code code
duplication
commit
|
commitdiff
|
tree
2017-10-19
Szilár
d
Pál
l
Disable O
p
enMP with
clang 3
.
4
p
o
st
-
submit
c
onfig
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
Remove unis
e
d OpenCL d
e
bugging helpers
commit
|
commitdiff
|
tree
2017-10-12
S
z
i
lárd
P
á
l
l
Remove the size_t from the P
M
E gather CUDA ken
e
ls
commit
|
commitdiff
|
tree
2017-10-05
Szil
á
r
d
Pá
l
l
Refacto
r
scaled
box ha
n
dling for PME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szi
l
á
rd Páll
Fix pair
l
is
t
array ass
e
r
tion
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
A
v
oid
-
Wmissing
-
prototypes w
a
rnings in clang CUD
A
bu
i
lds
commit
|
commitdiff
|
tree
2017-10-03
S
zil
á
rd Pál
l
Move E
w
a
ld splitting-related
co
d
e
t
o
e
wald-utils
commit
|
commitdiff
|
tree
2017-10-03
Szil
á
rd Pá
l
l
Enable c
o
mpiling CUD
A
device code with clang
commit
|
commitdiff
|
tree
2017-09-28
Szilárd Páll
Correct mi
s
placed CUDA timing event re
c
ord
commit
|
commitdiff
|
tree
2017-09-26
Szilárd P
á
ll
R
ename GPU launch/wait cycle
count
e
rs
commit
|
commitdiff
|
tree
2017-09-18
Szil
á
rd Páll
M
i
no
r
re
f
actorin
g
of
C
UDA
n
on-
b
ond
e
d kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilá
r
d P
á
ll
C
U
DA 9/Vo
l
t
a support for the pruning kernel
commit
|
commitdiff
|
tree
2017-09-12
S
z
ilárd
Páll
Merge
b
r
a
nch 'release-2016'
commit
|
commitdiff
|
tree
2017-09-11
Szilá
r
d
P
áll
NVIDIA Volta per
f
ormance
tweaks
commit
|
commitdiff
|
tree
2017-08-29
S
z
ilárd Páll
F
ix typo and t
w
e
ak env var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilárd P
á
l
l
Avoid d
i
v
i
sion by
z
e
r
o is pruning part calculation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd Pá
l
l
Add OpenCL pruni
n
g kern
e
l
s
a
n
d
launch/timin
g
lo
g
ic
commit
|
commitdiff
|
tree
2017-08-18
Sz
i
lárd Páll
Improv
e
awk
w
ard handling
of GMX_C
U
DA_TARGET* help
commit
|
commitdiff
|
tree
2017-08-18
S
z
i
lárd Páll
Add
CUDA pruning
kernels
a
nd lau
n
ch
/
timing lo
g
ic
commit
|
commitdiff
|
tree
2017-07-27
Szilárd P
á
ll
In
f
orm users abou
t
the end of run
D
LB
s
t
ate
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Páll
A
dd ARM_NE
O
N_ASI
M
D post-submit
test
commit
|
commitdiff
|
tree
2017-06-21
Szilárd
P
áll
Re-enable
l
o
st DD
w
arning + m
i
nor
c
ode m
o
dernization
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Re-enable
a
ccident
a
lly
l
ost DD warni
n
g
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Refactoring + clarification o
f
DLB sta
t
e handli
n
g
commit
|
commitdiff
|
tree
2017-06-15
Szilárd Páll
Allow disabling th
e
explicit us
e
o
f
CUDA
textures
commit
|
commitdiff
|
tree
2017-06-07
Szilárd Páll
Suppr
e
s
s sm
_
2x deprecation warning w
i
th
C
UD
A
8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Páll
Add CUDA 8
.
0 + SIMD pre-submit test
commit
|
commitdiff
|
tree
2017-06-02
S
z
ilárd Pá
l
l
Add ARM_
N
EON
p
ost-submit t
e
st
commit
|
commitdiff
|
tree
2017-05-29
Szi
l
árd Páll
Q
uotes ar
e
cool, t
y
p
o-fre
e
o
n
es
a
r
e e
v
en "cooler"
commit
|
commitdiff
|
tree
2017-05-23
S
zilárd Páll
Add
b
asic doxygen
fo
r
the Verlet
n
o
nbonded module
commit
|
commitdiff
|
tree
2017-03-29
S
zilárd P
á
ll
Refactor CU
D
A kernel
use
o
f
table
s
commit
|
commitdiff
|
tree
2017-03-29
Szilá
r
d Páll
Add CUDA util func
t
ion for constant lo
a
ds
commit
|
commitdiff
|
tree
2017-03-25
Szilá
r
d
Páll
C
o
n
dit
i
onal tw
e
ak in the n
o
nbonded GPU
kernels
commit
|
commitdiff
|
tree
2017-03-17
Szilárd
P
áll
Allow
bypass
i
n
g
O
penCL device comp
a
t
ibility check
commit
|
commitdiff
|
tree
2017-03-16
Szi
l
árd Páll
P
r
int
code of
unknown Op
e
n
C
L error
commit
|
commitdiff
|
tree
2017-03-09
S
z
ilárd
Páll
Fix mdrun hanging u
p
on exit w
i
th sep PME ranks
commit
|
commitdiff
|
tree
2017-01-24
Szilárd Páll
Remo
v
e unused
argument
i
n
GP
U
kern
e
ls
commit
|
commitdiff
|
tree
2016-12-09
Szilárd Pá
l
l
Turn off hw
l
o
c
s
upport w
h
en s
t
a
t
i
c
l
i
b fo
u
nd
commit
|
commitdiff
|
tree
2016-11-17
Szilá
r
d Páll
Correct
kern
e
l la
u
nch b
o
unds f
o
r CUDA sm_60
commit
|
commitdiff
|
tree
2016-11-01
Szilárd Pá
l
l
Merge "Merge branch release
-
2
016
"
commit
|
commitdiff
|
tree
2016-10-28
Szilárd Pá
l
l
G
PU-related addit
i
ons
t
o the install
/
u
s
er
g
uide
commit
|
commitdiff
|
tree
2016-10-27
S
zilárd
Páll
Make -cl
-
fast-rel
a
xed-math default
commit
|
commitdiff
|
tree
2016-10-26
Sz
i
lárd Páll
Add
G
MX_DISABLE_GPU_TIMIN
G
env
var
commit
|
commitdiff
|
tree
2016-10-09
S
zi
l
ár
d
Páll
Correct kernel l
a
unch bounds for CUD
A
sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilárd P
á
ll
M
ake ASAN/TS
A
N
/MSAN build types eas
i
er to discover
commit
|
commitdiff
|
tree
2016-07-08
S
z
ilá
r
d Páll
Add PDF metad
a
ta to the
manu
a
l
commit
|
commitdiff
|
tree
2016-07-08
Sz
i
lár
d
Páll
U
ser guide clarification
s
commit
|
commitdiff
|
tree
2016-07-07
Szilárd
Páll
A
dd user
guide in
f
o on CUDA applicat
i
on c
l
ocks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd Páll
Documen
t
GMX_
G
PU_APPL
I
CATION_
C
LOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd
Pá
l
l
D
i
s
able NVIDIA JIT
c
a
che with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
S
z
ilárd Páll
Fix
C
U
D
A bu
i
ld w
i
th multip
l
e compilation units
commit
|
commitdiff
|
tree
2016-06-05
Szilárd P
á
ll
A
d
d su
p
p
ort for CUDA CC
6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
S
zilárd Páll
Add env
.
var
.
t
o enable O
p
enCL
c
aching
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
F
i
x OpenCL bi
n
ary cache
file nam
e
generation
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Re
m
ove CUDA host compiler con
s
istency checks
commit
|
commitdiff
|
tree
2016-04-28
Szi
l
árd
Páll
Workaround for
gcc
f
a
lse
po
s
itive warning
commit
|
commitdiff
|
tree
2016-04-27
Szi
l
á
rd Pá
l
l
Fix multiple MPI rank
s
per no
d
e with O
p
enCL
commit
|
commitdiff
|
tree
2016-04-26
Sz
i
lárd
P
ál
l
Fix Ope
n
C
L
assertion
commit
|
commitdiff
|
tree
2016-04-19
Szilárd Pál
l
M
o
ve
o
ut CUDA profil
e
r tr
i
gg
e
rs from
N
BNXN
commit
|
commitdiff
|
tree
next