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Merge "Remove checks based on Generator" into release-4-5-patches
2012-04-28
Mark Abraham
Merge
"
Remo
v
e check
s
b
ased on Ge
n
e
rator" in
t
o
r
el
e
as
e
.
.
.
commit
|
commitdiff
|
tree
2012-04-28
M
ark Abraham
Me
r
ge "Fix version info g
e
nerati
o
n for aut
o
conf
.
" into
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
Szilár
d
Páll
Merge "fixed initial COM motion removal wi
t
h
m
ultipl
e
.
.
.
commit
|
commitdiff
|
tree
2012-04-26
David van de
r
Spoel
Merge "Various improvements to
s
hell
c
ode"
into release
.
.
.
commit
|
commitdiff
|
tree
2012-04-24
B
erk Hess
Merge
"
allow -append to overrule unsupported
f
ile locking
.
.
.
commit
|
commitdiff
|
tree
2012-04-16
Sander
Pronk
Merge
"Permit threads bu
i
ld
on Cygwin" in
t
o release
.
.
.
commit
|
commitdiff
|
tree
2012-04-14
Teemu Murtola
Merge "Cla
r
ified warning message" into
r
elease-4-5
.
.
.
commit
|
commitdiff
|
tree
2012-04-14
Teemu Murtola
Merge "Clar
i
fied warning string" in
t
o releas
e
-4-5-patches
commit
|
commitdiff
|
tree
2012-04-09
C
h
ristop
h
Junghans
Me
r
g
e "Documentation
a
nd
e
r
r
or
message enha
n
c
e
m
e
nts
.
.
.
commit
|
commitdiff
|
tree
2012-04-09
Chri
s
toph
J
u
n
ghans
Merg
e
"C
o
n
s
olidated
documentati
o
n of
.
mdp
restra
i
nt
.
.
.
commit
|
commitdiff
|
tree
2012-04-03
Roland Schulz
Merge "Fixes problems with g_msd
and g_e
n
erg
y
" into
.
.
.
commit
|
commitdiff
|
tree
2012-04-02
David van der Spoel
Mer
g
e "Improv
e
d pdb2gmx error message
"
into release
.
.
.
commit
|
commitdiff
|
tree
2012-03-18
Chris
t
oph Junghans
Me
r
ge "W
a
rn
i
n
g
s agai
n
st equilibratin
g
with P-R
P
-
coupling
.
.
.
commit
|
commitdiff
|
tree
2012-03-18
D
avid
van der
Spoe
l
Merge "F
i
x t
y
po in Cla
n
g CFlags" into release-
4
-5-patches
commit
|
commitdiff
|
tree
2012-03-15
Chr
i
stoph Junghan
s
Merge "Clarif
i
ed wording of doc
u
m
entation"
i
n
to r
e
lease
.
.
.
commit
|
commitdiff
|
tree
2012-03-12
Christoph Junghans
Merge "More
e
di
t
ori
a
l fixes to tool d
o
cumentation
"
.
.
.
commit
|
commitdiff
|
tree
2012-03-12
Teemu Murt
o
l
a
Merge "
M
a
de de
s
cription string for g_select -sel
e
ct
.
.
.
commit
|
commitdiff
|
tree
2012-03-09
David van
der Spoel
Merge
"Improved
cryptic
e
rror
m
es
s
age"
i
nto relea
s
e
.
.
.
commit
|
commitdiff
|
tree
2012-03-09
Carsten Kutzner
Merg
e
"Improved warning note with DD and peri
o
dic molecules
.
.
.
commit
|
commitdiff
|
tree
2012-03-08
David van
d
er
Spoe
l
Merg
e
"Minima
l
support for
C
l
a
ng"
i
nto release-
4
-
5
.
.
.
commit
|
commitdiff
|
tree
2012-02-25
David van d
e
r
Sp
o
el
Merge "
M
inor formatting fix
e
s to
.
mdp option documen
t
ation
.
.
.
commit
|
commitdiff
|
tree
2012-02-21
Teemu Murtol
a
Mer
g
e "Us
e
G
it server
(
mir
r
or)
to avoid fetching problems
.
.
.
commit
|
commitdiff
|
tree
2012-02-11
S
z
ilár
d
Pá
l
l
Merge c
h
anges
I
f0
c
2f9d9,Ic
2
a
8ad8
2
int
o
release-4-5
.
.
.
commit
|
commitdiff
|
tree
2012-02-10
Christo
p
h Junghans
Merge
"
Fixed bug with COM motion removal
o
n
part of
.
.
.
commit
|
commitdiff
|
tree
2012-02-02
Szilárd
Pál
l
M
erge
"
Append all I
C
C Performanc
e
f
lags only to Re
l
ease
.
.
.
commit
|
commitdiff
|
tree
2012-02-02
T
e
emu Murtola
Merge "
R
evert "Fix ICC
o
n
Windows
B
uild"" in
t
o release
.
.
.
commit
|
commitdiff
|
tree
2012-02-01
David van d
e
r Spoel
Merge "Fixed er
r
or message
to identify the
c
orrect
.
.
.
commit
|
commitdiff
|
tree
2012-02-01
David
van d
e
r
Spo
e
l
Merge "F
i
xed trjconv -sub" into release
-
4
-
5
-
patche
s
commit
|
commitdiff
|
tree
2012-02-01
D
a
vi
d
van der Sp
o
el
Mer
g
e
"Improved err
o
r message" into release-4-5-patches
commit
|
commitdiff
|
tree
2012-02-01
C
hri
s
toph
J
unghans
Merge "Fix signed/unsigned w
a
rnings" into re
l
ease
-
4
.
.
.
commit
|
commitdiff
|
tree
2012-01-31
Roland
Schulz
Reve
r
t "Fix I
C
C on
W
indows Build"
commit
|
commitdiff
|
tree
2012-01-31
D
avid
v
an der Spoel
Merge
"Fix ICC
on Windows Bu
i
l
d" into
r
elease-4-5-patc
h
es
commit
|
commitdiff
|
tree
2012-01-31
Mark Abrah
a
m
Merge "Corrected use
o
f ?
:
in conditi
o
nal" into r
e
lea
s
e
.
.
.
commit
|
commitdiff
|
tree
2012-01-25
Roland Schulz
Merge "Ne
w
approach for G
e
rri
t
Build sc
r
ip
t
" into
release
.
.
.
commit
|
commitdiff
|
tree
2012-01-20
David van de
r
Spoel
M
erge "Fixed tim
i
ng measu
r
e
m
ents
.
" int
o
r
e
lease-4-5
.
.
.
commit
|
commitdiff
|
tree
2012-01-15
Chr
i
stoph Junghans
Merge "Add
e
d
CMake Toolchain f
i
le for
B
lueGene
/
P" into
.
.
.
commit
|
commitdiff
|
tree
2012-01-04
Christ
o
ph J
u
nghan
s
Merge "Docum
e
nt
e
d the
f
unction of g_cluster
-cl -noav
.
.
.
commit
|
commitdiff
|
tree
2011-12-27
Roland Schulz
Merge "Added -dhdl to tpr file list,
fi
x
es #855
"
i
n
t
o
.
.
.
commit
|
commitdiff
|
tree
2011-12-20
Roland Schulz
Mer
g
e
"
Using MinSiz
e
R
el
c
onfiguration and Release target
.
.
.
commit
|
commitdiff
|
tree
2011-12-20
Rola
n
d Schul
z
Merge chan
g
es Iaf
4
c
56b7,Ib
a
bed87f int
o
relea
s
e-4
-
5
.
.
.
commit
|
commitdiff
|
tree
2011-12-14
Rola
n
d Sch
u
lz
Merge "Re-fixed sta
t
ic linking of
m
at
h
s libra
r
ies under
.
.
.
commit
|
commitdiff
|
tree
2011-12-13
Roland S
c
hulz
M
erge "Relaxed some assumptio
n
s about trajectory times
.
.
.
commit
|
commitdiff
|
tree
2011-12-11
R
oland Schulz
Merge "Set
-
DMPI o
n
ly if com
p
il
e
d for FAH"
i
nto rel
e
as
e
.
.
.
commit
|
commitdiff
|
tree
2011-12-08
R
o
land Sch
u
lz
Merge "Fix selec
t
ion parsing in
double precision
.
"
.
.
.
commit
|
commitdiff
|
tree
2011-12-08
Roland Schulz
Merge
"
Avo
i
d possible warnings i
f
HUGE_VAL != i
n
finity
.
.
.
commit
|
commitdiff
|
tree
2011-11-27
Rola
n
d Schulz
Merge "Initi
a
lize va
r
i
ables t
o
make GCC 4
.
6 not co
m
plain
.
.
.
commit
|
commitdiff
|
tree
2011-11-24
Roland Schulz
Me
r
ge "
F
ixed g_angle -f -or
to c
o
py tim
e
s from -f
t
o
.
.
.
commit
|
commitdiff
|
tree
2011-11-08
Christop
h
Jun
g
hans
Merge "Fixe
d
bug #830 (segv
i
n do_dssp
)
" int
o
releas
e
.
.
.
commit
|
commitdiff
|
tree
2011-11-08
Kas
s
on
Merge "
F
ix fo
r
GB,
double
,
SSE2 an
d
optimized kern
e
ls
.
.
.
commit
|
commitdiff
|
tree
2011-10-20
Christoph
Jung
h
ans
M
e
rge "Fixes for G
B
kern
e
l
"
into releas
e
-
4
-5
-
p
atches
commit
|
commitdiff
|
tree
2011-10-19
Teemu Mu
r
tol
a
Merg
e
"fixed pull constraining
doing
n
othin
g
, fixes
.
.
.
commit
|
commitdiff
|
tree
2011-09-27
Ro
s
se
n
Aposto
l
ov
Me
r
ge "R
e
m
o
ved CMak
e
warn
i
ng for
recent OpenMPI
v
e
r
sions
.
.
.
commit
|
commitdiff
|
tree
2011-09-19
Rossen Apostolov
Me
r
ge "Resolv
e
d gerrit issue
http
s
://gerrit
.
gromacs
.
.
.
commit
|
commitdiff
|
tree
2011-09-16
Ro
s
sen
A
postolov
Merge "g_wham:
f
ixed
pullx
.
xvg r
e
ading issue wi
t
h pull_geome
.
.
.
commit
|
commitdiff
|
tree
2011-09-16
Erik Linda
h
l
M
e
rge "made allocation for LINCS with partic
l
e decom
p
osi
t
i
o
n
.
.
.
commit
|
commitdiff
|
tree
2011-09-15
Berk Hess
Merge
"
I
nt
r
oduced
differ
e
nt options fo
r
pdb2gm
x
termi
n
i
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
R
ossen
A
postolov
Merge "
A
dded warn
i
ng
line
.
" into releas
e
-4-
5
-pat
c
hes
commit
|
commitdiff
|
tree
2011-09-13
B
erk Hess
M
e
rg
e
"F
i
x pdb
2
gmx -debug and
.
h
d
b
file
s
"
i
nto re
l
ease
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
B
erk Hess
Merge "F
i
x
e
d cha
r
ge groups of CHARM
M
27
D
NA/
R
N
A
terminal
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
Berk
H
ess
Merge "Added
ACE and
CT3 to CHARMM27 aminoa
c
i
d
s
.
r
tp
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
Ro
l
and Schulz
Mer
g
e
"
fixed g
r
o
m
p
p
issue
w
i
t
h decoupling and v
i
rtua
l
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
Rossen Apostolov
Merge "Fi
x
e
s
for
C
Make findi
n
g FORTRAN library names
.
.
.
commit
|
commitdiff
|
tree
2011-09-13
Berk Hess
M
erge "Remov
e
s
e
g
v in xpm
2
ps, fixes
#
611" into r
e
lease
.
.
.
commit
|
commitdiff
|
tree
2011-09-05
M
i
cha
e
l
Shi
r
ts
M
erge
"fixed inc
o
r
r
e
c
t pV t
e
rm in th
e
energy file
"
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
R
o
land S
c
hulz
M
erge "Fix
e
d g
_
d
isre derefe
r
e
n
c
ing cr" into rele
a
se
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
Roland Schu
l
z
Merge
"Typo
f
ix" i
n
to
r
elease-4-5
-
patches
commit
|
commitdiff
|
tree
2011-08-23
Roland Schulz
Merge "fixed operation
o
n closed fil
e
structure in
.
.
.
commit
|
commitdiff
|
tree
2011-08-23
Ro
l
and Schulz
Mer
g
e "
f
i
xed possible
i
n
f
inite loop when readi
n
g atom
.
.
.
commit
|
commitdiff
|
tree
2011-08-11
Ro
l
a
nd Schulz
Merge "r
e
moved npmenodes
mismatch
w
arning
i
n read_check
p
oint
.
.
.
commit
|
commitdiff
|
tree
2011-08-11
B
e
r
k He
s
s
Merge
"Make sure that ftell wor
k
s correctly
for files
.
.
.
commit
|
commitdiff
|
tree