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Add contribution information to webpage
2018-01-18
Pau
l
Bauer
Add contri
b
ution informati
o
n
to we
b
p
a
ge
commit
|
commitdiff
|
tree
2018-01-17
Berk Hess
Re
-
enable GPU wit
h
walls and 1 energy group
commit
|
commitdiff
|
tree
2018-01-16
Mark Abraham
Merge "Merge
r
e
lease-2018 into master"
commit
|
commitdiff
|
tree
2018-01-16
R
oland Sch
u
lz
M
e
rge release-2018
into
m
aster
commit
|
commitdiff
|
tree
2018-01-16
Berk Hess
Avoid mdrun echoing "N
o
opti
o
n -multi"
commit
|
commitdiff
|
tree
2018-01-11
Mark Abra
h
a
m
Bu
m
ped version
f
or n
e
xt
patch
release
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Version 2018
commit
|
commitdiff
|
tree
2018-01-11
M
a
rk Abrah
a
m
A
nnounce i
n
u
se
r
log files that
f
eature
s
ar
e
deprecated
.
commit
|
commitdiff
|
tree
2018-01-11
Ro
l
and Schulz
Fix GMX_ENABLE_AV
X
512_TESTS being in
t
ernal
commit
|
commitdiff
|
tree
2018-01-10
Ma
r
k Abraham
Fix automated GP
U
ID assi
g
nme
n
t
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lár
d
Páll
User
guid
e
updates to GPU sect
i
on
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
R
e
lease notes tweaks
commit
|
commitdiff
|
tree
2018-01-10
Mark Ab
r
a
h
am
A
d
d release note
s
to source
r
e
po
commit
|
commitdiff
|
tree
2018-01-10
Erik Lindah
l
Imp
r
ove pdb2gmx
f
or nonstandard re
s
i
d
ue
t
ypes
commit
|
commitdiff
|
tree
2018-01-10
Szilá
r
d
P
á
ll
Install guide updates
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
ár
d
Páll
En
v
ir
o
nment
v
ariable docs maintenanc
e
commit
|
commitdiff
|
tree
2018-01-10
Aleksei I
u
pin
o
v
Do
not print PME
c
o
unter breakdown
i
f it's em
p
ty
commit
|
commitdiff
|
tree
2018-01-10
Mark
A
b
rah
a
m
Handle
erroneous comman
d
line args better
commit
|
commitdiff
|
tree
2018-01-10
E
rik L
i
nd
a
hl
Clar
i
fied gmx rmsf documentation
commit
|
commitdiff
|
tree
2018-01-09
M
a
rk Abraham
Clean up user
g
uide for relea
s
e
commit
|
commitdiff
|
tree
2018-01-09
Mark Ab
r
aham
Merge
b
r
a
nch relea
s
e-2016 int
o
r
e
l
ease-2018
commit
|
commitdiff
|
tree
2018-01-09
Be
r
k
Hess
Do not tur
n
o
n DLB at replica e
x
chan
g
e
commit
|
commitdiff
|
tree
2018-01-04
Mar
k
Abra
h
a
m
Mer
g
e
branch release-2018
commit
|
commitdiff
|
tree
2018-01-04
Erik
L
indahl
I
mplem
e
nt changes
f
or CMake polic
y
0068
commit
|
commitdiff
|
tree
2018-01-04
Mark Abraha
m
Add test c
o
nfig of GPU bu
i
ld on slav
e
without GPU
commit
|
commitdiff
|
tree
2018-01-04
Paul B
a
uer
Fix gm
x
msd when
u
s
ing COM
removal a
n
d mol
e
cules
commit
|
commitdiff
|
tree
2018-01-03
E
rik Lindahl
Fix
index error
i
n gmx chi
commit
|
commitdiff
|
tree
2018-01-03
Paul
Bauer
Correct dihed
r
al restraint section
in Manual
commit
|
commitdiff
|
tree
2018-01-03
Erik Lindahl
A
v
oi
d
FTZ triggering simd
test failures
commit
|
commitdiff
|
tree
2018-01-02
Er
i
k Lindahl
Fix OpenC
L
compile
s
on
M
ac OS
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindah
l
I
m
p
rove man
u
al from comments by Ga
n
g Liu
commit
|
commitdiff
|
tree
2018-01-02
E
rik Lindahl
Make i
t
explicit that time u
n
its appl
y
to begin
/
end
.
.
.
commit
|
commitdiff
|
tree
2018-01-02
Erik Linda
h
l
Don't require matching names
b
etwe
e
n
rtp and
t
db files
commit
|
commitdiff
|
tree
2018-01-02
E
rik Lindahl
Don'
t
write reference pull gr
o
up 0
t
o log
commit
|
commitdiff
|
tree
2017-12-30
Mark Abraham
F
irst release candid
a
te for v
e
rsio
n
2018
commit
|
commitdiff
|
tree
2017-12-26
Eri
k
Lindah
l
Fix build
s
on ARM & clarify (ARM) GP
U
support
commit
|
commitdiff
|
tree
2017-12-22
Mark Ab
r
aham
Merge branch release-2016 into releas
e
-2018
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Merg
e
b
r
anc
h
relea
s
e-5-
1
i
n
t
o
release
-
2016
commit
|
commitdiff
|
tree
2017-12-21
M
a
rk Abraham
Bump min
o
r ve
r
s
ion for theo
r
etic
a
l new release
commit
|
commitdiff
|
tree
2017-12-21
Pa
s
cal M
e
rz
D
o
cumentation an
d
fixes for
physica
l
validation
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Up
d
ate double-preci
s
ion
t
est confi
g
urations
commit
|
commitdiff
|
tree
2017-12-21
Roland
Schulz
Update
c
hecks for Bu
i
l
dO
w
nFFT
commit
|
commitdiff
|
tree
2017-12-20
Mar
k
Abraham
Use new
defaultRealTol
e
rance() to stabilise some tests
commit
|
commitdiff
|
tree
2017-12-20
Ma
r
k Abraham
Mer
g
e "M
e
rge bran
c
h release-2016 into rel
e
ase
-
2018
.
.
.
commit
|
commitdiff
|
tree
2017-12-20
Mark Abraham
Merge branch releas
e
-2016 into rel
e
ase-201
8
commit
|
commitdiff
|
tree
2017-12-19
Mark
Abraham
Third b
e
ta releas
e
of 2018
commit
|
commitdiff
|
tree
2017-12-19
Mark Abraha
m
F
ix table tests
a
nd impr
o
ve table
cons
t
ru
c
t
ion
commit
|
commitdiff
|
tree
2017-12-19
Berk Hess
M
ake oversubscription warning
consis
t
ent
commit
|
commitdiff
|
tree
2017-12-19
Carst
e
n Kutzner
Fix
e
l
e
ctric field
.
mdp documentation
commit
|
commitdiff
|
tree
2017-12-19
Erik Linda
h
l
Use
reduced default
tolerances for tpx com
p
ar
i
so
n
commit
|
commitdiff
|
tree
2017-12-18
Rola
n
d Schulz
Fix cmake error with ema
c
s lock files in place
commit
|
commitdiff
|
tree
2017-12-17
Ro
l
an
d
Schul
z
Chan
g
e
a
v
x
_12
8
_fma build to double
commit
|
commitdiff
|
tree
2017-12-17
Roland Schulz
Support Simd4
N
for SimdRealWid
t
h<4
commit
|
commitdiff
|
tree
2017-12-14
Er
i
k Linda
h
l
Fix
P
BC error
in gmx_spatial
commit
|
commitdiff
|
tree
2017-12-14
Mark Ab
r
aham
Merge "Merge
b
ra
n
ch releas
e
-2016 into release-2018
.
.
.
commit
|
commitdiff
|
tree
2017-12-12
Erik Lindahl
Disallow ascii fo
r
m
a
ts fo
r
g
mx
t
rjcat
commit
|
commitdiff
|
tree
2017-12-12
Mark Abraham
Impr
o
ve
g
ro
m
pp
m
issing-para
m
e
t
ers er
r
or message
commit
|
commitdiff
|
tree
2017-12-12
M
a
rk
Abraham
Merge br
a
nch
release-2016 into rel
e
ase-2018
commit
|
commitdiff
|
tree
2017-12-11
M
a
rk Abraham
S
e
c
o
n
d
b
e
t
a
r
elease of
2
018
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Rem
o
ve d
u
plicated lin
e
s
from OPLS
ffbond
e
d
.
itp
commit
|
commitdiff
|
tree
2017-12-11
Ro
l
an
d
Schulz
Repl
a
ce intrinsic with inline a
s
m for AVX512
unit test
commit
|
commitdiff
|
tree
2017-12-11
Er
i
k Lin
d
ah
l
Don't warn about NVML clocks t
h
at a
r
e at max
commit
|
commitdiff
|
tree
2017-12-11
Berk Hess
Add
grompp
note for PR pcouple
+
posi
t
ion re
s
traints
commit
|
commitdiff
|
tree
2017-12-10
Erik Li
n
dahl
Revert "Disable defa
u
lt-on NV
M
L support in
CMake"
commit
|
commitdiff
|
tree
2017-12-07
Erik L
i
ndahl
Ad
d
ed
co
o
l
q
uote from Viveca's
defense
commit
|
commitdiff
|
tree
2017-12-07
Roland Sch
u
l
z
Fix AWH
t
est accuracy
commit
|
commitdiff
|
tree
2017-12-07
Berk
H
ess
Choose faster nbnx
n
SIMD kernels
on AMD Z
e
n
commit
|
commitdiff
|
tree
2017-12-07
Roland
S
chul
z
Fix exp test for
I
C
C
i
n doubl
e
commit
|
commitdiff
|
tree
2017-12-07
Rolan
d
S
chulz
Fix RelWithAsser
t
with ICC
commit
|
commitdiff
|
tree
2017-12-07
A
leksei Iupinov
Relax
e
d
p
r
e
cision in spline interpolation t
e
sts
commit
|
commitdiff
|
tree
2017-12-06
Szilárd Páll
Imp
l
e
m
e
n
t alternating GPU wa
i
t
commit
|
commitdiff
|
tree
2017-12-05
Aleksei Iupinov
Do not accept unsuppor
t
ed c
o
mbination "-pme cpu -pmef
f
t
.
.
.
commit
|
commitdiff
|
tree
2017-12-05
Roland Schulz
Fix Ar
r
ayRef<SimdDInt
3
2> for SSE/AVX
1
2
8
commit
|
commitdiff
|
tree
2017-12-05
Mark Abraham
Update testing
t
o i
n
clude c
m
a
ke 3
.
10
.
0
commit
|
commitdiff
|
tree
2017-12-05
Magn
u
s Lun
d
borg
SIMD
a
ccele
r
ated
U
r
ey-Br
a
dl
e
y
commit
|
commitdiff
|
tree
2017-12-05
Be
r
k Hess
Fix DD exact continuatio
n
bug
commit
|
commitdiff
|
tree
2017-12-04
Mark Abraham
Fix
f
r
ee
_
gpu
commit
|
commitdiff
|
tree
2017-12-04
Mark
A
braham
Merge bra
n
ch relea
s
e-2
0
16 into release-2018
commit
|
commitdiff
|
tree
2017-12-04
Berk
H
e
s
s
Update mdrun signal help text
commit
|
commitdiff
|
tree
2017-12-04
Be
r
k
H
ess
Only st
o
p at n
s
tlist steps with -reprod
commit
|
commitdiff
|
tree
2017-12-04
Erik Lindahl
Fix compilation issu
e
s for AVX-
5
12
commit
|
commitdiff
|
tree
2017-11-28
Mark
Abraham
GROMACS 2018 fi
r
st beta
r
e
l
ease
commit
|
commitdiff
|
tree
2017-11-28
B
erk Hess
Refac
t
or n
b
nxn exclu
s
ion setting
commit
|
commitdiff
|
tree
2017-11-28
Erik Lindahl
I
mprove status messages fo
r
SIMD chec
k
s
commit
|
commitdiff
|
tree
2017-11-27
Szilárd Páll
Time FFT/gather in mixed mod
e
commit
|
commitdiff
|
tree
2017-11-27
Aleksei
Iupinov
Disable failing s
e
pa
r
a
te PME rank
tests
commit
|
commitdiff
|
tree
2017-11-27
P
aul
B
a
uer
A
d
d GPU task i
n
format
i
on to u
s
e
r-g
u
id
e
commit
|
commitdiff
|
tree
2017-11-24
Alek
s
ei Iupi
n
o
v
Ena
b
le separate P
M
E GPU r
a
nk
commit
|
commitdiff
|
tree
2017-11-24
Aleksei Iupinov
Activate mi
x
ed m
o
de of PME on G
P
U
commit
|
commitdiff
|
tree
2017-11-24
Szilárd Pá
l
l
Add GPU sharing po
s
t-sub
m
it config
commit
|
commitdiff
|
tree
2017-11-24
Mark Ab
r
aham
Update
d
eveloper guide
commit
|
commitdiff
|
tree
2017-11-24
M
a
rk Abra
h
am
Activate P
M
E on GPUs
commit
|
commitdiff
|
tree
2017-11-24
Ale
k
sei Iupino
v
Remo
v
e
outdated (already imple
m
ented
)
pinning TODO
commit
|
commitdiff
|
tree
2017-11-24
Ma
r
k Abraha
m
Add
P
ME integrat
i
o
n
test
commit
|
commitdiff
|
tree
2017-11-24
Mark
A
braham
Extend task assi
g
nment code
commit
|
commitdiff
|
tree
2017-11-24
Alekse
i
I
u
pino
v
Mention gmx_install_headers() i
n
t
he developer manual
commit
|
commitdiff
|
tree
2017-11-24
Aleksei Iupinov
Make F
F
T real-space grid use
C
UDA pin
n
ing for mi
x
ed
.
.
.
commit
|
commitdiff
|
tree
2017-11-24
Aleksei Iupinov
Pi
n
coordi
n
ates
,
forces
a
nd ch
a
rges for PME on GPU
commit
|
commitdiff
|
tree
2017-11-22
Pasc
a
l M
e
rz
Pro
o
f of con
c
ept: Ph
y
sical v
a
l
idation
s
uite
commit
|
commitdiff
|
tree
2017-11-21
E
r
ik Lindahl
Separate SI
M
D flag dete
c
tion
f
rom m
a
n
a
gement
commit
|
commitdiff
|
tree
next