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Refactor cj preload in the nonbonded OpenCL kernels
2018-04-05
Szilárd
P
áll
Refactor cj preload in the nonbonded OpenCL kernels
commit
|
commitdiff
|
tree
2018-03-29
Szilárd Páll
Twe
a
k
/enab
l
e
i
cc 1
8
po
s
t-submit tests
commit
|
commitdiff
|
tree
2018-03-29
Szil
á
rd
Páll
Switch C
U
DA 9
.
0/gcc 5 tes
t
to CUDA 9
.
1/gcc
6
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Pá
l
l
Require Open
C
L 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilár
d
Páll
Fix clang 6
.
0 with C
U
DA
9
.
0
commit
|
commitdiff
|
tree
2018-03-12
Szilárd Pá
l
l
Avoid
i
cc-specif
i
c
-
m
ar
c
h=core-avx2 flag with gcc/clang
commit
|
commitdiff
|
tree
2018-03-06
S
z
ilárd
P
áll
Ex
t
end
"
F
ind
i
n
g out
h
o
w to run mdrun better" sect
i
on
commit
|
commitdiff
|
tree
2018-03-05
S
z
ilárd Páll
Ad
d
to the contribu
t
o
r section
commit
|
commitdiff
|
tree
2018-02-21
Szilárd Páll
Sw
i
tch pre-submi
t
CU
D
A 8
.
0 test to 9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Páll
Avoid aborting mdrun w
h
en
G
PU sanity check
d
etects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
Szilárd Páll
Remove barriers
p
rev
e
nting t
e
xture reference races
commit
|
commitdiff
|
tree
2018-02-12
Szilárd Páll
Remove single
/
multi c
o
m
pilati
o
n unit sw
i
t
c
hing logi
c
commit
|
commitdiff
|
tree
2018-02-12
Szilárd Páll
R
emove texture reference suppor
t
in
the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szilárd Páll
Call G
P
U pr
o
filer
r
eset on
s
eparat
e
PME ranks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd
Páll
User
guide upd
a
tes to GPU section
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Release notes
t
weaks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd
P
áll
Install gu
i
de
u
pdates
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Environment
v
ariab
l
e docs maintenance
commit
|
commitdiff
|
tree
2017-12-10
Szilárd Páll
Disable
d
ef
a
ult-o
n
NVML
s
upport in CMake
commit
|
commitdiff
|
tree
2017-12-06
Szilárd Pál
l
Impl
e
ment altern
a
t
ing GPU w
a
it
commit
|
commitdiff
|
tree
2017-11-28
Szilárd
Pá
l
l
Sep
a
rate local GPU NB wait from emulation launch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Pál
l
Refactor GPU rolling prune l
a
u
nch
commit
|
commitdiff
|
tree
2017-11-27
Szilárd Páll
Time
FF
T
/
g
at
h
er in
m
ixed mode
commit
|
commitdiff
|
tree
2017-11-24
Szilá
r
d Páll
Add GPU shar
i
ng post-submit config
commit
|
commitdiff
|
tree
2017-11-23
Szilárd P
á
ll
Move GPU FFT/gather launch af
t
er GPU non
b
o
n
deds
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Use -mavx2 -mfma i
n
s
tead
o
f -march
w
ith
AVX2
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Merge common nb
n
xn CUDA
/
OpenCL GP
U
w
a
it code-p
a
ths
commit
|
commitdiff
|
tree
2017-11-07
Szilárd
P
á
l
l
Add
wal
l
cycle ti
m
er for
t
he PME GPU F
r
ed
u
ct
i
on
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Pá
l
l
Split off nbnx
n
GPU timing
a
nd staging r
e
duction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Dedupl
i
cate CUDA and Ope
n
C
L
ti
m
er struct
commit
|
commitdiff
|
tree
2017-10-31
Sz
i
lár
d
Páll
Fix nstlist increase warning pr
i
nt
commit
|
commitdiff
|
tree
2017-10-31
Szil
á
rd P
á
ll
Ch
e
ck CUDA
a
vailable
/
compile
d
c
o
de
c
ompatib
i
lity
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Pál
l
Fix nstlist i
n
cr
e
as
e
warning print
commit
|
commitdiff
|
tree
2017-10-26
Szilárd Pá
l
l
R
e
organ
i
ze PME GPU launch
commit
|
commitdiff
|
tree
2017-10-23
Szilá
r
d Páll
Elimin
a
te some OCL/CUDA code code duplicat
i
o
n
commit
|
commitdiff
|
tree
2017-10-19
S
z
i
lár
d
Páll
Disable O
p
enMP with clang
3
.
4 post-submit config
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
R
e
m
ove un
i
sed Ope
n
CL d
e
bugg
i
ng hel
p
e
r
s
commit
|
commitdiff
|
tree
2017-10-12
Szil
á
rd
Páll
R
e
mov
e
the size_t from the PME gath
e
r CUDA
kenel
s
commit
|
commitdiff
|
tree
2017-10-05
Szilá
r
d
Páll
Refactor scaled box handl
i
ng for
P
ME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Pá
l
l
Fix pair list ar
r
ay as
s
ertion
commit
|
commitdiff
|
tree
2017-10-05
S
zilá
r
d P
á
ll
A
v
oid
-Wmissing-p
r
otot
y
pes wa
r
n
i
ngs in c
l
an
g
CUDA builds
commit
|
commitdiff
|
tree
2017-10-03
Sz
i
lárd Páll
Move Ewald split
t
in
g
-related code
to ewa
l
d-utils
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
Ena
b
le
c
ompiling
C
U
DA device code with clang
commit
|
commitdiff
|
tree
2017-09-28
Szilárd Pál
l
Co
r
rect misplaced CUDA timing
e
vent r
e
c
ord
commit
|
commitdiff
|
tree
2017-09-26
S
zi
l
árd Pál
l
Rename GPU laun
c
h/w
a
it cycl
e
cou
n
ters
commit
|
commitdiff
|
tree
2017-09-18
Szilárd Pál
l
Minor refacto
r
in
g
of
C
UDA no
n
-
b
onded
k
ernels
commit
|
commitdiff
|
tree
2017-09-14
Szil
á
rd Páll
C
U
DA 9/Volta supp
o
rt for the pruning
ker
n
el
commit
|
commitdiff
|
tree
2017-09-12
Szilár
d
Páll
M
erge bra
n
ch 'release-201
6
'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd Pál
l
N
V
ID
I
A Vol
t
a
p
e
r
f
ormance tweaks
commit
|
commitdiff
|
tree
2017-08-29
Szilárd Páll
F
ix typo and tw
e
ak env var d
o
cs
commit
|
commitdiff
|
tree
2017-08-29
Sz
i
lárd P
á
ll
Avo
i
d division by
zero is pruning pa
r
t calculation
commit
|
commitdiff
|
tree
2017-08-21
Szil
á
rd
P
áll
Add OpenCL pruning kernels and launch/timing
l
o
g
ic
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Páll
Improve
awkward handling of GMX_CUDA_TARGE
T
*
help
commit
|
commitdiff
|
tree
2017-08-18
Szilár
d
Pá
l
l
Add CUD
A
pruning kernels and
l
aunc
h
/timing
l
ogic
commit
|
commitdiff
|
tree
2017-07-27
Szilár
d
Páll
Inform users ab
o
ut the end of
r
un DLB state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd
P
áll
Add ARM_NEON
_
ASIMD post-s
u
bmit t
e
st
commit
|
commitdiff
|
tree
2017-06-21
Szilárd Pá
l
l
Re
-
enable lost D
D
warning + m
i
nor
code
moderniza
t
ion
commit
|
commitdiff
|
tree
2017-06-20
Szilárd Páll
Re
-
enable
accidenta
l
ly lost DD warn
i
n
g
commit
|
commitdiff
|
tree
2017-06-20
Szilárd P
á
ll
Refac
t
oring + clarifi
c
ati
o
n of DLB state ha
n
dling
commit
|
commitdiff
|
tree
2017-06-15
Szi
l
árd
Páll
A
l
low disabl
i
ng the explicit use of CUDA textures
commit
|
commitdiff
|
tree
2017-06-07
Szilárd Páll
Suppress sm_2x deprecation warn
i
ng with CUDA
8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilár
d
Páll
Add
CUDA 8
.
0
+
SIMD pre-s
u
bmit test
commit
|
commitdiff
|
tree
2017-06-02
S
zil
á
rd
P
á
ll
Add A
R
M_NEON post-submit test
commit
|
commitdiff
|
tree
2017-05-29
Szi
l
árd Páll
Quo
t
e
s are co
o
l, t
y
po-free ones
are even "coole
r
"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd Páll
Add basic doxyg
e
n for the Verlet nonbonded module
commit
|
commitdiff
|
tree
2017-03-29
Szilá
r
d
Páll
Refact
o
r CUDA k
e
rnel use of tables
commit
|
commitdiff
|
tree
2017-03-29
Szil
á
rd Páll
Add CUDA
u
til function for constan
t
loads
commit
|
commitdiff
|
tree
2017-03-25
S
z
ilá
r
d
Páll
Conditiona
l
tw
e
ak in the no
n
bonded GPU kernels
commit
|
commitdiff
|
tree
2017-03-17
S
zilárd Páll
Allow bypassing OpenC
L
d
ev
i
ce c
o
mpatibility che
c
k
commit
|
commitdiff
|
tree
2017-03-16
S
z
i
l
árd Páll
Print cod
e
of unk
n
own OpenC
L
err
o
r
commit
|
commitdiff
|
tree
2017-03-09
S
z
il
á
r
d P
á
ll
Fix mdr
u
n hanging upon exit w
i
th sep
PME ran
k
s
commit
|
commitdiff
|
tree
2017-01-24
S
z
ilárd Páll
R
e
move unused argument in GPU kerne
l
s
commit
|
commitdiff
|
tree
2016-12-09
Szilár
d
Páll
Tur
n
off
h
w
loc
support when static l
i
b
f
ound
commit
|
commitdiff
|
tree
2016-11-17
Szilárd Páll
Correct
k
e
r
ne
l
launch bound
s
fo
r
CUDA sm_6
0
commit
|
commitdiff
|
tree
2016-11-01
Sz
i
lá
r
d
P
áll
Merge
"M
e
rge
br
a
nch r
e
leas
e
-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szi
l
árd Páll
G
PU
-
relat
e
d additi
o
ns to the install/user guide
commit
|
commitdiff
|
tree
2016-10-27
Szilá
r
d Páll
Make -c
l
-fast-re
l
axed-math de
f
ault
commit
|
commitdiff
|
tree
2016-10-26
Szilárd Páll
Add GMX_DISABL
E
_GP
U
_T
I
MING env var
commit
|
commitdiff
|
tree
2016-10-09
Szilárd Pál
l
Correct kernel
l
aunch
b
ounds for CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilá
r
d Páll
M
a
k
e
ASAN/TSAN/MSAN build types
easier t
o
discover
commit
|
commitdiff
|
tree
2016-07-08
Sz
i
l
á
rd P
á
ll
Add
P
DF metadata to the m
a
nual
commit
|
commitdiff
|
tree
2016-07-08
Szi
l
árd Páll
Us
e
r gu
i
de c
l
arifications
commit
|
commitdiff
|
tree
2016-07-07
Sz
i
lárd Páll
A
dd user guide info on CUDA
a
pplication
c
locks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd Páll
Docume
n
t GM
X
_GPU_AP
P
L
ICATIO
N
_
C
LOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szi
l
árd Páll
Disable
N
V
IDIA J
I
T cache w
i
th
O
penCL
commit
|
commitdiff
|
tree
2016-06-14
Szilárd Páll
Fix CUDA build with mult
i
ple compi
l
ation units
commit
|
commitdiff
|
tree
2016-06-05
S
zilárd Páll
Add support for CUDA CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
S
zilárd
P
á
l
l
Add env
.
v
a
r
.
to ena
b
le Op
e
nC
L
caching
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Fix OpenCL b
i
nary cache file name genera
t
ion
commit
|
commitdiff
|
tree
2016-05-05
Sz
i
lárd
P
áll
Rem
o
v
e CUDA ho
s
t
compiler
c
o
nsis
t
ency c
h
ecks
commit
|
commitdiff
|
tree
2016-04-28
Szilárd Páll
Worka
r
ound f
o
r gcc false posi
t
ive warning
commit
|
commitdiff
|
tree
2016-04-27
Szil
á
rd Pá
l
l
Fix multiple M
P
I ranks
per node with OpenCL
commit
|
commitdiff
|
tree
2016-04-26
Sz
i
lárd Pál
l
Fix O
p
enCL assert
i
on
commit
|
commitdiff
|
tree
2016-04-19
S
zi
l
á
r
d
Páll
Move o
u
t CUDA p
r
ofi
l
er
t
riggers
f
rom
NBN
X
N
commit
|
commitdiff
|
tree
2016-04-13
Szilárd Pál
l
Spelling
fixes
commit
|
commitdiff
|
tree
2016-04-13
Szilárd
P
áll
Do not cre
a
te empty m
a
n/m
a
n7
dire
c
tory
commit
|
commitdiff
|
tree
2016-04-04
Szilárd Páll
Mark more varia
b
les as advanc
e
d
commit
|
commitdiff
|
tree
2016-03-31
Szilárd Páll
ref
a
ctor CUDA textu
r
e-based table initialization
commit
|
commitdiff
|
tree
2016-03-31
Szilard Pal
l
avo
i
d CP
U
ove
r
subs
c
ription
w
i
t
h
GPUs
commit
|
commitdiff
|
tree
2016-03-31
Sz
i
l
á
r
d
Pál
l
Fix
m
ult
i
pl
e
tMPI ranks per
O
pe
n
CL device
commit
|
commitdiff
|
tree
next