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Refactor cj preload in the nonbonded OpenCL kernels
2018-04-05
Szilárd
Páll
Refactor cj preload
in
the nonbonded OpenCL ke
r
nels
commit
|
commitdiff
|
tree
2018-03-29
Szil
á
rd Páll
Tweak/enable
i
cc 18 post-submit
tes
t
s
commit
|
commitdiff
|
tree
2018-03-29
Szil
á
r
d
Páll
Switch CUDA 9
.
0/
g
cc
5
tes
t
to
C
UDA 9
.
1/
g
cc
6
commit
|
commitdiff
|
tree
2018-03-13
Szilárd Páll
R
eq
u
i
re
O
penC
L
1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilárd
P
áll
Fix clang
6
.
0
with CUDA
9
.
0
commit
|
commitdiff
|
tree
2018-03-12
Szilárd
P
áll
Avoid ic
c
-sp
e
ci
f
ic
-
marc
h
=core-avx2 f
l
ag
w
ith gcc
/
cla
n
g
commit
|
commitdiff
|
tree
2018-03-06
Szilárd P
á
ll
Extend "Fin
d
ing out how to
run mdrun b
e
tter" section
commit
|
commitdiff
|
tree
2018-03-05
Szi
l
ár
d
Páll
Add to the con
t
r
ibutor section
commit
|
commitdiff
|
tree
2018-02-21
Szilárd
Páll
Switch
p
r
e-submit CUD
A
8
.
0 tes
t
to
9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Sz
i
l
á
r
d
Páll
Avoid
abor
t
ing mdrun
w
hen GPU sanity c
h
ec
k
detects
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
S
z
ilár
d
P
á
l
l
Remove barri
e
rs preventing textur
e
ref
e
ren
c
e r
a
ces
commit
|
commitdiff
|
tree
2018-02-12
S
z
ilárd Pál
l
R
e
move
single/multi co
m
pila
t
ion unit s
w
itch
i
ng
log
i
c
commit
|
commitdiff
|
tree
2018-02-12
Sz
i
lárd P
á
l
l
Re
m
ove text
u
r
e reference
sup
p
ort
i
n
the CUDA
commit
|
commitdiff
|
tree
2018-01-12
Szilárd
Páll
C
all
G
PU
profile
r
reset o
n
s
ep
a
rate PME ra
n
ks
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lárd Páll
User guide updates to GPU
s
e
c
tion
commit
|
commitdiff
|
tree
2018-01-10
Sz
i
lárd P
á
ll
R
e
lease notes tweaks
commit
|
commitdiff
|
tree
2018-01-10
Szil
á
rd Páll
Install guide updates
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
árd Páll
Environment
variable docs ma
i
n
t
enance
commit
|
commitdiff
|
tree
2017-12-10
Sz
i
lárd Pá
l
l
Disable
d
e
f
aul
t
-on NVML support in CMa
k
e
commit
|
commitdiff
|
tree
2017-12-06
Szi
l
árd Páll
Impleme
n
t alternating GPU wait
commit
|
commitdiff
|
tree
2017-11-28
Szilá
r
d Páll
Separ
a
te local GPU NB wa
i
t from emulation
l
aunch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Páll
Refactor
G
PU roll
i
ng prune lau
n
ch
commit
|
commitdiff
|
tree
2017-11-27
Szilárd Páll
Time FFT/
g
a
t
her in mixed mode
commit
|
commitdiff
|
tree
2017-11-24
Szilárd Páll
Add
GPU sharing p
o
st-
s
ub
m
i
t
co
n
fi
g
commit
|
commitdiff
|
tree
2017-11-23
Szilárd Páll
Move GPU
F
FT/gather
l
a
u
n
ch aft
e
r GPU non
b
ondeds
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
Use
-mavx2 -mfma
i
n
s
tead of -march w
i
th
A
VX2
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
Merge common nbnx
n
C
U
DA/OpenCL
GPU
w
ait code
-
paths
commit
|
commitdiff
|
tree
2017-11-07
Szilár
d
Páll
Add wallcycle
t
imer
for the PME GPU F
reduction
commit
|
commitdiff
|
tree
2017-11-07
S
z
i
lá
r
d
P
áll
Split
o
f
f
nbnxn GPU tim
i
ng and stagin
g
reduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Deduplica
t
e C
U
DA a
n
d
Ope
n
CL timer stru
c
t
commit
|
commitdiff
|
tree
2017-10-31
Szi
l
árd Páll
Fix nstlist incr
e
a
se
w
arning print
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Check CU
D
A
a
v
ailable/compiled
c
ode com
p
atibility
commit
|
commitdiff
|
tree
2017-10-31
Szilá
r
d Pál
l
Fix
n
s
t
li
s
t i
n
crease warning print
commit
|
commitdiff
|
tree
2017-10-26
S
z
i
l
ár
d
Páll
Reorg
a
nize PME
GPU launch
commit
|
commitdiff
|
tree
2017-10-23
Szil
á
rd Páll
Elim
i
nate
som
e
OCL/CUDA code code duplicatio
n
commit
|
commitdiff
|
tree
2017-10-19
Szilárd P
á
ll
Disable OpenMP with clang 3
.
4
post-submit config
commit
|
commitdiff
|
tree
2017-10-19
Szil
á
rd Páll
Remove un
i
se
d
O
p
enCL deb
u
gging helper
s
commit
|
commitdiff
|
tree
2017-10-12
Szilárd Páll
Remove th
e
size_t from the P
M
E
g
ather CUD
A
k
enels
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
Refactor scaled bo
x
handlin
g
for
P
ME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szil
á
rd Páll
Fix pair list array
a
ssertion
commit
|
commitdiff
|
tree
2017-10-05
S
zilárd
P
áll
Avoid
-Wmissing-pr
o
totypes warnings in clang C
U
DA b
u
ilds
commit
|
commitdiff
|
tree
2017-10-03
S
z
ilárd Páll
Move Ewald splitting-related code to
e
wa
l
d-util
s
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
Enable compiling CUDA devic
e
code with clang
commit
|
commitdiff
|
tree
2017-09-28
Sz
i
l
á
rd Páll
C
orrect misplaced CUDA ti
m
i
n
g even
t
record
commit
|
commitdiff
|
tree
2017-09-26
Szilárd Páll
R
ename GPU launch/wai
t
cyc
l
e counters
commit
|
commitdiff
|
tree
2017-09-18
Szil
á
rd
P
áll
Min
o
r
refactor
i
n
g o
f
C
UDA non-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Sz
i
lárd Pá
l
l
C
UDA 9/Volta
s
upport for the pru
n
i
ng ke
r
nel
commit
|
commitdiff
|
tree
2017-09-12
Szilárd Páll
Me
r
g
e
branch 'release-
2
0
1
6'
commit
|
commitdiff
|
tree
2017-09-11
Szil
á
rd Páll
NVIDIA Volta
perfo
r
man
c
e
t
weak
s
commit
|
commitdiff
|
tree
2017-08-29
S
z
ilárd Páll
F
ix typo and twe
a
k env var docs
commit
|
commitdiff
|
tree
2017-08-29
Sz
i
lárd Páll
Av
o
id division by zero
i
s
pruning
p
art ca
l
culation
commit
|
commitdiff
|
tree
2017-08-21
Szilárd Páll
A
dd OpenC
L
pruning kernels an
d
lau
n
ch/timing logic
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Pá
l
l
Improve
awkward handling of G
M
X_CUDA_
T
A
RGET*
h
elp
commit
|
commitdiff
|
tree
2017-08-18
Szilá
r
d Pál
l
Add CUDA pruning ke
r
ne
l
s and l
a
unch
/
timing
l
ogic
commit
|
commitdiff
|
tree
2017-07-27
S
z
ilárd Páll
I
n
form users about the end of run
DLB
state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd Pál
l
Add
A
RM_NEON_ASI
M
D post-submit test
commit
|
commitdiff
|
tree
2017-06-21
Szilárd
Páll
Re
-
e
nable lost DD warning + minor c
o
de modernization
commit
|
commitdiff
|
tree
2017-06-20
Szi
l
árd Páll
Re-enabl
e
a
ccidental
l
y lost DD warning
commit
|
commitdiff
|
tree
2017-06-20
Sz
i
l
á
rd Páll
Refactoring + clarification
of DLB state
handling
commit
|
commitdiff
|
tree
2017-06-15
Szilárd Pá
l
l
Allow
d
i
sabling
t
he exp
l
icit
u
se of C
U
DA t
e
xtures
commit
|
commitdiff
|
tree
2017-06-07
Sz
i
lárd
P
á
l
l
Suppress sm_2
x
depre
c
ation warn
i
ng
with CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
S
zilárd Páll
Add
C
U
DA 8
.
0 + SIMD
pre-su
b
m
i
t test
commit
|
commitdiff
|
tree
2017-06-02
Szilárd Pá
l
l
Add ARM_NEON p
o
st-submit test
commit
|
commitdiff
|
tree
2017-05-29
S
zilárd
P
á
l
l
Quotes are cool, t
y
po-free
ones are
e
ven
"
cool
e
r"
commit
|
commitdiff
|
tree
2017-05-23
S
z
ilá
r
d Páll
Add b
a
s
ic doxygen
f
or the
Verle
t
n
o
nbonded module
commit
|
commitdiff
|
tree
2017-03-29
Szil
á
r
d Pál
l
Refactor CUDA kernel use
o
f
t
ab
l
es
commit
|
commitdiff
|
tree
2017-03-29
Szilárd
P
áll
A
d
d C
U
D
A
util fu
n
c
tion for co
n
s
t
ant loads
commit
|
commitdiff
|
tree
2017-03-25
Szilárd Pál
l
Conditional
t
weak
in the
n
onbonded GPU ke
r
ne
l
s
commit
|
commitdiff
|
tree
2017-03-17
Szil
á
rd Pá
l
l
All
o
w
bypassin
g
OpenCL devi
c
e compati
b
ility check
commit
|
commitdiff
|
tree
2017-03-16
Szilárd Páll
Print code of unknown OpenC
L
err
o
r
commit
|
commitdiff
|
tree
2017-03-09
Szilá
r
d Páll
Fi
x
m
d
r
un hanging up
o
n ex
i
t w
i
th se
p
PME ra
n
ks
commit
|
commitdiff
|
tree
2017-01-24
Szil
á
r
d
Páll
Remove unused a
r
gument
in GPU kernels
commit
|
commitdiff
|
tree
2016-12-09
Szil
á
rd Páll
Turn off
h
w
l
oc supp
o
rt w
h
en stati
c
l
ib f
o
und
commit
|
commitdiff
|
tree
2016-11-17
Szilárd Páll
Correct ke
r
nel l
a
unch bounds for CUDA sm_60
commit
|
commitdiff
|
tree
2016-11-01
Szilárd
P
á
l
l
Mer
g
e "Merge branch re
l
ea
s
e-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szilár
d
P
á
ll
GPU-related
additi
o
ns to the install/user g
u
ide
commit
|
commitdiff
|
tree
2016-10-27
S
z
ilárd Pál
l
Make
-
cl-fast-r
e
lax
e
d-
m
ath default
commit
|
commitdiff
|
tree
2016-10-26
S
z
ilá
r
d Páll
Add GMX_DI
S
ABLE_GPU_TIMING env var
commit
|
commitdiff
|
tree
2016-10-09
S
zilárd P
á
ll
Correct
k
ern
e
l l
a
u
nch bounds for CU
D
A
sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilá
r
d Pá
l
l
Make A
S
A
N/TSAN/MSAN build types
e
asier t
o
discover
commit
|
commitdiff
|
tree
2016-07-08
S
zil
á
rd Páll
Add
P
DF metad
a
ta to
t
he manual
commit
|
commitdiff
|
tree
2016-07-08
Szilár
d
P
áll
User guide
clarifications
commit
|
commitdiff
|
tree
2016-07-07
Sz
i
lárd Páll
Ad
d
user g
u
ide info on CUDA a
p
pl
i
c
a
t
i
on
clocks
commit
|
commitdiff
|
tree
2016-07-05
Sz
i
lár
d
P
áll
Docu
m
ent GMX_GPU_APP
L
ICATION_CLOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd Pál
l
Disable NVIDIA JIT cache with
OpenCL
commit
|
commitdiff
|
tree
2016-06-14
Szilárd
Páll
Fix CUDA b
u
i
l
d
with m
u
ltipl
e
comp
i
lation
units
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Páll
Add support for CUDA C
C
6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szi
l
árd P
á
l
l
Add
env
.
var
.
to enable OpenCL caching
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Fix OpenCL binary
c
ache file n
a
me generation
commit
|
commitdiff
|
tree
2016-05-05
S
z
ilárd Páll
Remove CUD
A
host com
p
ile
r
consistency che
c
ks
commit
|
commitdiff
|
tree
2016-04-28
Szilárd
Páll
W
o
r
kar
o
und
f
or gcc
f
al
s
e posit
i
ve warnin
g
commit
|
commitdiff
|
tree
2016-04-27
S
zilárd Páll
Fix
m
u
ltip
l
e MP
I
ran
k
s per n
o
de with OpenCL
commit
|
commitdiff
|
tree
2016-04-26
Szilárd Pál
l
Fix O
p
enC
L
assertion
commit
|
commitdiff
|
tree
2016-04-19
Szilá
r
d
Páll
Move o
u
t C
U
DA pro
f
iler triggers
from NBNXN
commit
|
commitdiff
|
tree
2016-04-13
Szilárd Pá
l
l
S
pe
l
ling fixe
s
commit
|
commitdiff
|
tree
2016-04-13
S
zilárd Páll
Do not
c
reate em
p
ty
m
an/man7 di
r
e
c
t
ory
commit
|
commitdiff
|
tree
2016-04-04
S
zilárd Páll
Mark more variabl
e
s
a
s
a
dvan
c
ed
commit
|
commitdiff
|
tree
2016-03-31
Szilárd Páll
re
f
actor CUDA texture-b
a
sed
table initialization
commit
|
commitdiff
|
tree
2016-03-31
Szilard Pall
avoid CPU ov
e
rsubsc
r
iptio
n
with GPUs
commit
|
commitdiff
|
tree
2016-03-31
Szilá
r
d Páll
F
i
x multiple tM
P
I ran
k
s per Open
C
L d
e
v
ice
commit
|
commitdiff
|
tree
next