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Test clang on ARM in nightly matrix
2017-09-04
Teemu Murtola
Introd
u
ce self-pai
r
s search in nbsea
r
c
h
commit
|
commitdiff
|
tree
2017-09-04
Teemu
M
urtol
a
R
efacto
r
analysis nbse
a
rch
t
e
s
t
s
commit
|
commitdiff
|
tree
2017-08-21
T
e
emu
Murtola
S
i
mple union-fi
n
d structure
commit
|
commitdiff
|
tree
2017-07-19
T
e
emu Mu
r
t
ola
Prune u
n
n
ecessar
y
cells in analysis nbs
e
arch
commit
|
commitdiff
|
tree
2017-07-17
Teemu Murt
o
la
Fix hwloc detection
commit
|
commitdiff
|
tree
2017-07-11
Teemu Murtola
Support scoped key-value tree tran
s
form rules
commit
|
commitdiff
|
tree
2017-07-06
T
e
emu
Murtola
Detect unknown mdp options in g
m
x dump/check
commit
|
commitdiff
|
tree
2017-06-30
Teemu M
u
rto
l
a
Fi
x
b
ool
e
an ser
i
ali
z
a
tion
commit
|
commitdiff
|
tree
2017-06-30
Tee
m
u
M
urto
l
a
Ex
t
end key-value tree compari
s
on
a
nd tests
commit
|
commitdiff
|
tree
2017-06-29
Teemu Murtola
G
eneraliz
e
IForceProvi
d
er
commit
|
commitdiff
|
tree
2017-06-28
Teemu Murtola
Extend key-value tree serializ
a
tion and tests
commit
|
commitdiff
|
tree
2017-06-27
Teemu Murtola
Do n
o
t use
c
onf-man
.
p
y for
non-m
a
np
a
ge
d
oc bu
i
lds
commit
|
commitdiff
|
tree
2017-05-29
Teemu Murtola
Avoid
s
ome incor
r
e
c
t
beha
v
ior
with gmx solvate
commit
|
commitdiff
|
tree
2017-05-29
Teemu M
u
rtola
R
emove pbcuti
l
<-> mdt
y
p
e
s
c
yclic depend
e
ncy
commit
|
commitdiff
|
tree
2017-05-11
Teemu Murtola
Generalize com
m
and-line test
o
utpu
t
f
i
le checkin
g
commit
|
commitdiff
|
tree
2017-04-17
Teemu M
u
rtola
Consistent
a
pproach for whole-pr
o
g
r
am tests
commit
|
commitdiff
|
tree
2017-04-11
Teemu Murto
l
a
I
m
p
r
o
v
e key-value tr
e
e g
m
x dum
p
s
u
ppo
r
t
commit
|
commitdiff
|
tree
2017-04-06
Tee
m
u Murtola
Fix
m
e
mory a
c
cess
i
s
s
ues in gmx solvate
commit
|
commitdiff
|
tree
2017-04-06
Teemu Mu
r
t
o
l
a
Consistent nami
n
g
f
or gmxana tests
commit
|
commitdiff
|
tree
2017-04-04
Teemu Murtola
Uti
l
ity
function
s
for fo
r
matt
i
ng string
values
commit
|
commitdiff
|
tree
2017-03-13
Teemu Murtola
Improv
e
option support & tests for key-value tree
s
commit
|
commitdiff
|
tree
2017-03-13
Teemu
M
urtola
Remove manual
a
lignm
e
nt from InMem
o
rySeria
l
izer
commit
|
commitdiff
|
tree
2017-03-12
Teemu Murtola
C
o
nsi
s
tent TextWriter
trailing whitespace handling
commit
|
commitdiff
|
tree
2017-03-11
Teemu Mu
r
tol
a
Up
d
ate copyright year for gmx -version
commit
|
commitdiff
|
tree
2017-03-04
Teemu M
u
r
tol
a
Re
m
o
v
e
M
DModules use fr
o
m mdlib
commit
|
commitdiff
|
tree
2017-03-04
T
eemu Murtola
S
p
lit md module facets to d
i
fferent inter
f
a
ces
commit
|
commitdiff
|
tree
2017-02-28
Te
e
mu
Murtola
More documen
t
ation fo
r
key-value trees
commit
|
commitdiff
|
tree
2017-02-27
T
e
emu Mur
t
o
la
Deco
u
ple t_inputrec
f
rom
MD
M
odules
commit
|
commitdiff
|
tree
2017-02-27
Tee
m
u M
u
r
tola
Remove module re
f
ere
n
ces
from t_inputrec
commit
|
commitdiff
|
tree
2017-02-10
Teemu M
u
rtola
Check log ou
t
put i
n
thread
a
ffinity tests
commit
|
commitdiff
|
tree
2017-02-09
Te
e
mu
M
urtola
Multi-rank thread affinit
y
tests
commit
|
commitdiff
|
tree
2017-02-09
Teemu Mur
t
o
la
Documen
t
key-value tree
t
ransforms and impr
o
ve checks
commit
|
commitdiff
|
tree
2017-02-09
Teem
u
Murtola
O
v
erview documentat
i
on for
new mdp input s
c
heme
commit
|
commitdiff
|
tree
2017-02-08
Teemu Mu
r
tola
Generic K
e
y
V
a
lueTree broadcast
commit
|
commitdiff
|
tree
2017-02-08
Te
e
mu Mu
r
tol
a
Generic gmx check
i
m
p
l
eme
n
tation
with K
e
yV
a
lueTree
commit
|
commitdiff
|
tree
2017-02-08
Teemu Murtola
Generic gmx dump implementation f
o
r K
e
y
V
alueTr
e
e
commit
|
commitdiff
|
tree
2017-02-08
Teemu Murtola
Generic
t
pr h
a
ndling for electri
c
field
commit
|
commitdiff
|
tree
2016-12-12
Teemu M
u
rt
o
l
a
Merge branch release-2
0
16
commit
|
commitdiff
|
tree
2016-12-10
Teemu M
u
rtola
Minor CMake clea
n
up & modern
i
za
t
ion
commit
|
commitdiff
|
tree
2016-12-10
Teemu Mu
r
tola
Build
scripts f
o
r
i
mp
r
oved
relea
s
e workflow
commit
|
commitdiff
|
tree
2016-12-08
Tee
m
u
Mu
r
to
l
a
Fix a
n
d clean up handling
of so
m
e linking
commit
|
commitdiff
|
tree
2016-12-08
Teemu Murtola
Fix possible
memory erro
r
w
i
th long se
l
e
c
tio
n
s
commit
|
commitdiff
|
tree
2016-12-07
T
eemu Murtola
Fix us
e
of position variables with plus/merge
commit
|
commitdiff
|
tree
2016-11-29
T
e
e
mu Murtola
Additi
o
na
l
selection he
l
p
commit
|
commitdiff
|
tree
2016-11-06
Teemu Murto
l
a
Add
sele
c
t
ion-enabled gmx t
r
aj
commit
|
commitdiff
|
tree
2016-10-30
Tee
m
u Murtola
Support normalizin
g
value
s
in KeyV
a
lu
e
Tree
commit
|
commitdiff
|
tree
2016-10-24
T
eemu M
u
r
t
ol
a
E
lectric
field m
d
p pa
r
s
ing
u
sing
o
ptions
commit
|
commitdiff
|
tree
2016-10-24
Teemu Murt
o
l
a
Sup
p
ort for default values from
Option
s
to KeyValu
e
Tree
commit
|
commitdiff
|
tree
2016-10-21
Teemu Murt
o
la
Clean up opti
o
n (defau
l
t) value access
commit
|
commitdiff
|
tree
2016-10-19
Teem
u
Murtola
Serializatio
n
su
p
port f
o
r KeyValueTree
commit
|
commitdiff
|
tree
2016-10-17
Teemu Murtola
Supp
o
rt opti
o
n assignment from differe
n
t precision
commit
|
commitdiff
|
tree
2016-10-17
Teemu
M
urtola
Add support for reading values fr
o
m
refdata
commit
|
commitdiff
|
tree
2016-10-16
T
e
e
m
u
M
urtola
Im
p
roved err
o
r handling for KeyValu
e
Tre
e
operati
o
ns
commit
|
commitdiff
|
tree
2016-10-15
T
e
emu Murtola
Improved ad
d
res
s
sanitizer support
commit
|
commitdiff
|
tree
2016-10-15
Teemu Murtol
a
Work a
r
o
und mem
o
ry
leak in
t
_s
t
a
t
e
commit
|
commitdiff
|
tree
2016-10-15
T
ee
m
u Murtola
Fix most
memory leaks r
e
cen
t
ly int
r
oduc
e
d
commit
|
commitdiff
|
tree
2016-10-14
Teemu Mu
r
t
o
l
a
Use gmx_mtop_t in selections, part 3
commit
|
commitdiff
|
tree
2016-10-14
T
e
emu Murtola
Use gmx_mtop_t
i
n s
e
lections, pa
r
t
2
commit
|
commitdiff
|
tree
2016-10-13
Te
e
mu Murtol
a
Us
e
gmx_mtop
_
t in selections, pa
r
t
2
commit
|
commitdiff
|
tree
2016-10-13
T
eemu
Murtola
Ad
d
back-mapping t
o
KeyValueTreeTransfor
m
commit
|
commitdiff
|
tree
2016-10-13
Teemu Mur
t
ol
a
Update bundled
T
N
G
commit
|
commitdiff
|
tree
2016-10-13
T
e
emu Murtola
Ge
t
ter
f
or mapped paths fr
o
m Key
V
a
lueT
r
eeTransform
commit
|
commitdiff
|
tree
2016-10-12
Te
e
mu Murtola
Use gmx_mtop_t
i
n
selection
s
, part
1
commit
|
commitdiff
|
tree
2016-10-12
T
eemu
Murtola
Wrap sel
.
method evaluati
o
n parameter
s
to
s
truc
t
commit
|
commitdiff
|
tree
2016-10-11
Teemu Murt
o
l
a
Suppor
t
concurrent t_topolog
y
and g
m
x_mtop_t use
commit
|
commitdiff
|
tree
2016-10-11
T
e
emu M
u
rtola
Check
atom m
a
ss ava
i
lability
in
s
elections
commit
|
commitdiff
|
tree
2016-10-05
Teemu Murtola
Su
p
port
d
ifferent key matching
i
n K
e
yVa
l
ueTreeTransform
commit
|
commitdiff
|
tree
2016-10-05
Teemu Murtola
M
e
rge
"Merge b
r
anch release-5-
1
into
rele
a
se-2016"
.
.
.
commit
|
commitdiff
|
tree
2016-09-24
Teemu
M
urtol
a
Fix d
e
fault
n
ice level
i
n mdrun-on
l
y build
commit
|
commitdiff
|
tree
2016-09-12
Te
e
mu Murtola
Fix various mem
o
r
y
leaks
commit
|
commitdiff
|
tree
2016-09-07
Teemu Murtola
Cl
e
an
u
p
CTest
test
management
commit
|
commitdiff
|
tree
2016-08-30
Teemu Murtola
B
a
si
c
supp
o
rt f
o
r transforming KeyValueTrees
commit
|
commitdiff
|
tree
2016-08-27
Teem
u
Murtol
a
Sup
p
ort KeyValueTree objec
t
s in refdata
commit
|
commitdiff
|
tree
2016-08-18
Teemu Mu
r
tola
Check for unus
e
d
r
e
fdata value
s
commit
|
commitdiff
|
tree
2016-08-18
Tee
m
u Mur
t
ola
Generic s
t
ructured
k
ey-v
a
lue tree for opt
i
ons
commit
|
commitdiff
|
tree
2016-08-18
Tee
m
u Mur
t
ola
S
up
p
o
r
t
f
or
n
on-stri
n
g option value assi
g
nm
e
nt
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murtola
Basic support for
array-of-
s
tructs in op
t
i
o
n
s
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murto
l
a
Generalize an
d
s
i
mplif
y
option
v
a
l
ue storage
commit
|
commitdiff
|
tree
2016-08-17
Teemu Murto
l
a
Generalize option se
c
tion internals
commit
|
commitdiff
|
tree
2016-08-17
Teemu
Murt
o
la
R
e
implem
e
nt sub
s
e
c
tions in
O
ptions
commit
|
commitdiff
|
tree
2016-08-04
Teemu Murtola
F
i
x/improve doc links in temp
l
at
e
/README
commit
|
commitdiff
|
tree
2016-08-01
Teemu
M
urtola
Functio
n
to
s
plit del
i
m
i
ted strings
commit
|
commitdiff
|
tree
2016-07-14
Teemu Murtola
Use new
e
r gcc for cover
a
ge
commit
|
commitdiff
|
tree
2016-07-07
Teemu Murtola
C
h
ange handling f
o
r
m
issing releng
d
ocs
commit
|
commitdiff
|
tree
2016-06-30
Teemu Murtola
E
xtract
s
t
r
i
n
g par
s
ing
r
out
i
nes
t
o utility
commit
|
commitdiff
|
tree
2016-06-28
Teemu Murtol
a
S
plit up compare
.
*
commit
|
commitdiff
|
tree
2016-06-27
Teem
u
Murtola
Fact
o
r
y
for creating t_i
n
p
utrec
commit
|
commitdiff
|
tree
2016-06-01
T
e
e
mu Murtola
Use C++ r
e
placement for md
_
loggi
n
g
.
*
commit
|
commitdiff
|
tree
2016-06-01
Teemu Murtol
a
Bas
i
c C++ logging interface
commit
|
commitdiff
|
tree
2016-05-31
Teemu
M
u
r
tola
I
mprove make_ndx hel
p
text
commit
|
commitdiff
|
tree
2016-05-25
Teemu Murtola
Supp
o
r
t
f
o
r
real MPI uni
t
tes
t
s
commit
|
commitdiff
|
tree
2016-05-24
T
e
e
mu Murto
l
a
T
e
s
ts for single-
r
an
k
thread affinity se
t
ting
commit
|
commitdiff
|
tree
2016-05-21
Teemu M
u
r
tola
Pa
s
s number of local threa
d
s to thread affinity
commit
|
commitdiff
|
tree
2016-05-21
Tee
m
u Murtola
Allow creati
n
g mock HardwareTopolo
g
y o
b
ject
s
commit
|
commitdiff
|
tree
2016-05-21
Teemu Murtola
Us
e
only HardwareTopology for thread affinity
commit
|
commitdiff
|
tree
2016-05-21
Teemu Murtola
Merg
e
b
ranch release-2
0
16
commit
|
commitdiff
|
tree
2016-05-21
Teemu Murtola
Bump version
n
umb
e
rs for
2017 developmen
t
commit
|
commitdiff
|
tree
2016-05-17
Te
e
m
u
M
urtola
Fix some thread
a
f
f
inity case
s
commit
|
commitdiff
|
tree
2016-05-10
Te
e
mu Murtola
Additional Jenki
n
s d
o
c
u
m
entation
commit
|
commitdiff
|
tree
2016-05-10
T
e
emu Mu
r
to
l
a
Include r
e
leng
d
o
cum
e
ntation t
o
developer guide
commit
|
commitdiff
|
tree
next