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Test clang on ARM in nightly matrix
2017-11-07
S
zilárd
P
áll
Add wallcycle tim
e
r for the PME GPU F
r
eduction
commit
|
commitdiff
|
tree
2017-11-07
Szilárd P
á
ll
Split off nbnxn GPU t
i
ming and stag
i
n
g
reducti
o
n
commit
|
commitdiff
|
tree
2017-11-07
Sz
i
lá
r
d Páll
Deduplicate
CUDA and Open
C
L timer struc
t
commit
|
commitdiff
|
tree
2017-10-31
S
zilárd Páll
Fix nstl
i
st
i
n
c
r
ease warning pr
i
nt
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Check CUDA availabl
e
/
c
o
m
piled code c
o
m
p
atibility
commit
|
commitdiff
|
tree
2017-10-31
S
zilárd Páll
F
i
x
nstlist increase warning print
commit
|
commitdiff
|
tree
2017-10-26
Szilárd Páll
Reorga
n
ize
P
ME GPU launch
commit
|
commitdiff
|
tree
2017-10-23
S
zilárd Páll
Eliminat
e
som
e
OCL/CUDA code code duplicatio
n
commit
|
commitdiff
|
tree
2017-10-19
Szilá
r
d P
á
ll
Disable
OpenMP
w
ith clang 3
.
4 post-su
b
mit
c
onfig
commit
|
commitdiff
|
tree
2017-10-19
Szilárd Páll
Remo
v
e uni
s
ed
O
pe
n
CL debu
g
gi
n
g helper
s
commit
|
commitdiff
|
tree
2017-10-12
Sz
i
lárd Páll
Rem
o
ve the size_t from th
e
PME gather CU
D
A kenels
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Pá
l
l
R
efactor scaled bo
x
h
a
ndling fo
r
PME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szilár
d
P
á
ll
Fix pair
l
ist a
r
ray asser
t
i
on
commit
|
commitdiff
|
tree
2017-10-05
Sz
i
l
árd Páll
Avoid -Wmissing-prototype
s
warnings
i
n clang CUDA
b
ui
l
d
s
commit
|
commitdiff
|
tree
2017-10-03
Sz
i
lár
d
P
á
l
l
Mov
e
E
wald splitt
i
n
g
-
related c
o
de to ewal
d
-
u
tils
commit
|
commitdiff
|
tree
2017-10-03
Szil
á
r
d
P
áll
Enable c
o
mpiling CUDA device
code
w
ith
c
l
an
g
commit
|
commitdiff
|
tree
2017-09-28
Szi
l
árd P
á
ll
Corr
e
ct m
i
spla
c
e
d CUDA timing event record
commit
|
commitdiff
|
tree
2017-09-26
Szilárd P
á
ll
R
ena
m
e GP
U
launch/wait
c
ycle
c
ounters
commit
|
commitdiff
|
tree
2017-09-18
S
zilárd Páll
Minor refactoring
of C
U
DA non-bo
n
ded kerne
l
s
commit
|
commitdiff
|
tree
2017-09-14
Sz
i
lárd Páll
CUDA 9/
V
olta supp
o
rt
f
o
r th
e
pru
n
ing
k
e
rnel
commit
|
commitdiff
|
tree
2017-09-12
Szilá
r
d Páll
Me
r
ge branch 'relea
s
e
-
2016'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd Páll
NV
I
DIA V
o
lta performan
c
e tweaks
commit
|
commitdiff
|
tree
2017-08-29
Sz
i
lárd Pál
l
Fix typo and tweak e
n
v var docs
commit
|
commitdiff
|
tree
2017-08-29
Szilárd Páll
A
v
oid division b
y
zero is
pruning
p
art cal
c
ulation
commit
|
commitdiff
|
tree
2017-08-21
Szi
l
árd Páll
A
dd OpenCL
p
runing ker
n
els and
l
a
u
n
c
h/tim
i
ng
l
ogic
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Páll
Improve awkward
h
andling of GMX_CUDA_TARGET* he
l
p
commit
|
commitdiff
|
tree
2017-08-18
Szi
l
á
r
d Páll
Add CU
D
A pruning kernels a
n
d l
a
unch/timing logic
commit
|
commitdiff
|
tree
2017-07-27
Szilárd Pál
l
I
nform users about the end
o
f run DLB state
commit
|
commitdiff
|
tree
2017-06-26
Szilárd
P
ál
l
Add A
R
M_N
E
ON_A
S
I
MD
p
o
st
-
s
u
bmit
test
commit
|
commitdiff
|
tree
2017-06-21
Szilá
r
d Páll
Re
-
e
nable
l
o
st
DD war
n
ing
+
minor code mode
r
nizatio
n
commit
|
commitdiff
|
tree
2017-06-20
Szilárd
P
áll
Re
-
enable accident
a
lly
l
o
st
DD
w
a
rning
commit
|
commitdiff
|
tree
2017-06-20
S
z
ilárd Páll
Refa
c
toring + cl
a
ri
f
ic
a
tion o
f
DLB state h
a
nd
l
i
ng
commit
|
commitdiff
|
tree
2017-06-15
Szilárd
Páll
Allow
dis
a
b
ling
the explicit
u
se of CUDA t
e
xtures
commit
|
commitdiff
|
tree
2017-06-07
Szilá
r
d Páll
Suppress s
m
_2x deprecat
i
o
n
w
a
rning wit
h
CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Pál
l
Add CU
D
A 8
.
0
+ SIMD p
r
e
-
submit te
s
t
commit
|
commitdiff
|
tree
2017-06-02
Szi
l
árd Páll
Add ARM
_
N
E
ON post-su
b
mit te
s
t
commit
|
commitdiff
|
tree
2017-05-29
S
zi
l
árd
P
áll
Q
u
ote
s
are c
o
ol
,
typ
o
-free on
e
s are even "cooler"
commit
|
commitdiff
|
tree
2017-05-23
Szilárd P
á
ll
A
d
d bas
i
c doxy
g
en for the Verlet nonbond
e
d
m
o
d
u
le
commit
|
commitdiff
|
tree
2017-03-29
Szilárd P
á
l
l
R
efactor CUDA kernel use of tables
commit
|
commitdiff
|
tree
2017-03-29
Szi
l
á
rd Pá
l
l
Add CUDA
uti
l
function for constant
l
oads
commit
|
commitdiff
|
tree
2017-03-25
Szilá
r
d Páll
Con
d
i
t
i
o
nal tweak
i
n
t
he
n
on
b
o
n
ded GPU
ker
n
els
commit
|
commitdiff
|
tree
2017-03-17
Szilárd Páll
Allow
by
p
a
s
sing O
p
enCL device compatibi
l
i
t
y ch
e
c
k
commit
|
commitdiff
|
tree
2017-03-16
Szilárd Páll
Print code of unkn
o
w
n Open
C
L
error
commit
|
commitdiff
|
tree
2017-03-09
S
z
i
l
á
rd Páll
F
ix mdrun hanging upo
n
e
x
it with sep PME ranks
commit
|
commitdiff
|
tree
2017-01-24
S
zilá
r
d Páll
Rem
o
ve unused argument in GPU kerne
l
s
commit
|
commitdiff
|
tree
2016-12-09
Szil
á
rd P
á
ll
T
urn
off hwl
o
c
s
upport when s
t
atic lib found
commit
|
commitdiff
|
tree
2016-11-17
S
zilárd Pá
l
l
Cor
r
ect kern
e
l launch bounds for CUDA
s
m
_
60
commit
|
commitdiff
|
tree
2016-11-01
S
zi
l
árd
Pál
l
Merge "Me
r
ge b
r
anc
h
release-201
6
"
commit
|
commitdiff
|
tree
2016-10-28
Szi
l
árd
P
áll
GPU-related additions to
t
he in
s
tall/
u
ser guide
commit
|
commitdiff
|
tree
2016-10-27
S
zilárd Páll
M
ake -cl-fast-re
l
a
xed-
m
ath defaul
t
commit
|
commitdiff
|
tree
2016-10-26
Szilá
r
d Páll
A
dd GMX_DISAB
L
E_GPU_
T
IMI
N
G e
n
v
var
commit
|
commitdiff
|
tree
2016-10-09
Szil
á
rd Pál
l
Corr
e
ct
kernel launch bounds
for CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
Szilárd
Páll
Make
A
SAN/TSAN/MSAN build types
e
asie
r
to discover
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
A
dd
PDF metadata to th
e
manua
l
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Pál
l
User guide
c
l
ar
i
ficati
o
ns
commit
|
commitdiff
|
tree
2016-07-07
Szi
l
árd Páll
Add user gu
i
de inf
o
on CUDA appli
c
ation c
l
oc
k
s
commit
|
commitdiff
|
tree
2016-07-05
S
zilárd Páll
Document GMX_GPU_
A
PPLICAT
I
ON_C
L
OCK
S
commit
|
commitdiff
|
tree
2016-07-04
Szilárd Páll
Disable NVIDIA JIT cache with OpenCL
commit
|
commitdiff
|
tree
2016-06-14
Szilárd Páll
Fix CUDA build
w
i
t
h multiple compilation uni
t
s
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Páll
Add support for CU
D
A
CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Add env
.
var
.
to enable Open
C
L cach
i
ng
commit
|
commitdiff
|
tree
2016-06-02
S
zilá
r
d P
á
l
l
Fix OpenCL b
i
n
ary cac
h
e file
name genera
t
io
n
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Rem
o
ve CUDA host com
p
iler consistency c
h
e
c
k
s
commit
|
commitdiff
|
tree
2016-04-28
Szi
l
árd Páll
Workar
o
und for gcc fa
l
se positi
v
e warning
commit
|
commitdiff
|
tree
2016-04-27
Szilárd Páll
F
ix multiple MPI ranks per node with Open
C
L
commit
|
commitdiff
|
tree
2016-04-26
Szilárd P
á
ll
Fix O
p
enCL assertion
commit
|
commitdiff
|
tree
2016-04-19
Szi
l
árd Páll
Move out CUDA profiler
trigge
r
s from NBN
X
N
commit
|
commitdiff
|
tree
2016-04-13
Sz
i
lárd Pá
l
l
Spelling fixe
s
commit
|
commitdiff
|
tree
2016-04-13
Szilár
d
Páll
Do not create
e
mpty man/ma
n
7 directory
commit
|
commitdiff
|
tree
2016-04-04
Szilárd Páll
Mark mo
r
e variables as a
d
vanced
commit
|
commitdiff
|
tree
2016-03-31
Szilárd Páll
r
e
factor CUDA t
e
xture-based table init
i
aliza
t
ion
commit
|
commitdiff
|
tree
2016-03-31
Szilár
d
Páll
F
i
x
m
u
ltiple tMPI ranks
per Op
e
nCL device
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
L
J
c
o
m
bination ru
l
e
k
ernels for O
p
enCL
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Pá
l
l
Re-enabl
e
i
-atom
type l
o
ca
l
mem pre
f
etch in
OpenCL
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
Desc
r
i
b
e AMD APP
S
DK
3
.
0 issues in
t
he
g
u
ide
commit
|
commitdiff
|
tree
2016-03-17
Szilárd Páll
Fixed Op
e
nCL e/fs
h
if
t
clear kernel firs
t
invoca
t
ion
commit
|
commitdiff
|
tree
2016-02-26
S
zilárd
P
áll
Fix
l
e
ftover load()
c
al
l
s
i
n
the simd util headers
commit
|
commitdiff
|
tree
2016-02-19
Sz
i
lárd Pá
l
l
Fix Open
C
L ta
b
le inter
p
olation
s
of Ewald correcti
o
n
commit
|
commitdiff
|
tree
2016-02-17
Szilárd
P
áll
reintroduce supercl inter
a
ctio
n
mask cons
t
ant
commit
|
commitdiff
|
tree
2016-02-17
Szilárd Páll
change macros to
c
onstants in
G
PU code
commit
|
commitdiff
|
tree
2016-02-15
S
zilá
r
d Páll
Allow GMX_NB_MIN
_
CI=0 to be
p
assed
commit
|
commitdiff
|
tree
2016-02-11
S
zil
á
rd Páll
Re-enable LJ-PM
E
+
L
ore
n
tz-B
e
rthe
l
ot on
GPUs
commit
|
commitdiff
|
tree
2016-02-08
Szi
l
árd P
á
l
l
Handle uniformly GMX_OCL_NOGENCACHE
commit
|
commitdiff
|
tree
2016-01-26
S
z
ilár
d
Páll
GPU code reorga
n
izatio
n
and twe
a
k
s
commit
|
commitdiff
|
tree
2016-01-20
Szilárd Páll
Merge remot
e
-tra
c
king branch '
o
r
i
g
i
n/release-5-
1
'
into
.
.
.
commit
|
commitdiff
|
tree
2016-01-09
Szil
á
r
d Páll
split NBNXN CUDA kernels into four compila
t
ion
u
n
its
commit
|
commitdiff
|
tree
2015-10-15
Szilárd Páll
Add CUDA nvcc >=7
.
0 support
commit
|
commitdiff
|
tree
2015-10-15
Szil
á
rd P
á
l
l
Correct
CUDA
v
ersion comparisons
commit
|
commitdiff
|
tree
2015-05-06
S
zilár
d
P
á
l
l
Merge "Merge re
l
ease-4-6 into
r
eleas
e
-5-0
"
i
nto
r
elease-5-0
commit
|
commitdiff
|
tree
2015-04-21
Szilárd
Páll
All
o
w
manua
l
ly
setting target GPU a
r
chite
c
ture
s
commit
|
commitdiff
|
tree
2015-04-17
Szilár
d
Páll
d
e
fine CU
D
A
v
ersio
n
and texo
b
j
s
u
ppor
t
in config
.
h
commit
|
commitdiff
|
tree
2014-11-29
S
zilárd Páll
Ad
d
k
ernel and compiler suport for CC 3
.
7 devices
commit
|
commitdiff
|
tree
2014-11-17
Szilárd Páll
A
l
lo
w
i
n
creasing CUDA thread bloc
k
size
commit
|
commitdiff
|
tree
2014-11-17
Szilárd Páll
Add CUDA com
p
iler support for C
C
5
.
0
commit
|
commitdiff
|
tree
2014-11-14
Szilárd
Páll
S
t
art
n
v
prof
profiling at
c
ount
e
r reset
commit
|
commitdiff
|
tree
2014-09-26
S
zilárd Páll
Fi
x
incorrect asser
t
i
on statem
e
nt
commit
|
commitdiff
|
tree
2014-09-09
S
zilárd
Páll
Fix m
a
lfor
m
ed CUDA version macro check
commit
|
commitdiff
|
tree
2014-06-01
Szilárd
P
áll
Ad
d
quote on
the kT-kj/mol conversi
o
n factor
commit
|
commitdiff
|
tree
2014-03-11
S
zilárd Pá
l
l
Bu
m
p required
C
UDA versi
o
n to 4
.
0
commit
|
commitdiff
|
tree
2014-01-28
Szilár
d
P
á
l
l
clar
i
fied
OpenMP-related things in mdrun hel
p
/
man
commit
|
commitdiff
|
tree
next