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2010-08-08	Erik Lindahl	Added NHE as an Amber aminoacid residue type	commit \| commitdiff \| tree
2010-08-08	Erik Lindahl	Copied CK-CB-N*-CT Amber improper to also list CK-CB...	commit \| commitdiff \| tree
2010-08-06	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-06	Erik Lindahl	Fixed incorrect #endif -> #else that caused the C all...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed a bug in index generation for non-adjacent protein...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed nonexistent return type on gmx_mm_sincos_pd	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Added out int-extraction macro to double precision...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Added double precision SSE2 transcendental functions...	commit \| commitdiff \| tree
2010-08-04	Erik Lindahl	Fixed accuracy issues in gmx_mm_log_ps(), and added...	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Modified TER record writing behaviour (only add after...	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Merge branch 'release-4-5-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Fixed build issue for template program in double precision	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Removed unused variable that caused a warning	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Temporarily disabled double precision SSE2 generalized...	commit \| commitdiff \| tree
2010-08-02	Erik Lindahl	Fixed error in (unused) SSE2 double precision inline...	commit \| commitdiff \| tree
2010-08-01	Erik Lindahl	Modified index processing to reinstate residue-splitting...	commit \| commitdiff \| tree
2010-08-01	Erik Lindahl	Added ion classes to residuetypes.dat	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced non-thread-safe calls to ctime() with our...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Added portable gmx_ctime_r() to enable replacement...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced localtime with localtime_r() on unix and localtime_...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Replaced readdir() with readdir_r() to avoid future...	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-30	Erik Lindahl	Ported x86-64 single precision SSE2 all-vs-all patch...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Commented out calls to double prec. SSE2 all-vs-all...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Worked around cross-inclusion problem between grompp...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Removed deprecated nsb.h header	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Changed index group analysis to only create water_and_ions...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Added residuedefinitions for water, and introduced...	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Reverted incorrect Makefile edit earlier today	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-29	Erik Lindahl	Improved chain separation detection for pdb2gmx, and...	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Added missing double prec. SSE2 header file	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Temporarily disabled a new pdb2gmx option	commit \| commitdiff \| tree
2010-07-27	Erik Lindahl	Modified PDB io code to merely store the chain _identifier_...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added lots of missing cmakedefines to config.h.cmakein	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added lots of header cmakedefines to config.h.cmakein...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added NME to the list of amino acid names	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	pdb2gmx now applies termini to the first/last residues...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added gbsa.itp to Makefile.am in all amber force fields...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Changed to non-prefixed default RNA residue names in...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Changed to non-prefixed default RNA residue names in...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added files in preparation of double-precision AllvsAll...	commit \| commitdiff \| tree
2010-07-26	Erik Lindahl	Added gbsa parameters to Amber force fields	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Resolved merge conflict	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Fixed bug for small systems in all-vs-all kernels,...	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Added DNA/RNA residue translation tables for charmm27	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Enforce rule about matching rtp and tdb names to non...	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Added autoconf and cmake checks to make the restrict...	commit \| commitdiff \| tree
2010-07-25	Erik Lindahl	Added a POSIX/Windows portable way to scan directories...	commit \| commitdiff \| tree
2010-07-24	Erik Lindahl	Second batch of file modifications to enable Amber...	commit \| commitdiff \| tree
2010-07-24	Erik Lindahl	pdb2gmx changes to support protein/DNA/RNA mixtures...	commit \| commitdiff \| tree
2010-07-23	Erik Lindahl	Remove proper torsions with zero force constant at...	commit \| commitdiff \| tree
2010-07-23	Erik Lindahl	Removed scratch files from amber99	commit \| commitdiff \| tree
2010-07-21	Erik Lindahl	Fixed bugs that caused type-4 impropers (same form...	commit \| commitdiff \| tree
2010-07-21	Erik Lindahl	Changes to enable Amber99	commit \| commitdiff \| tree
2010-06-23	Erik Lindahl	Added gcc41 check	commit \| commitdiff \| tree
2009-12-16	Erik Lindahl	Manual application of patch 5c076c352b4c8a43b52ab441691932ef...	commit \| commitdiff \| tree
2009-12-16	Erik Lindahl	Merge branch 'release-4-0-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2009-12-16	Erik Lindahl	Removed default nice-19 behavior from mdrun even on...	commit \| commitdiff \| tree
2009-12-12	Erik Lindahl	Replaced acos-based method for calculating angles between...	commit \| commitdiff \| tree
2009-12-11	Erik Lindahl	Fixed signed/unsigned comparison mismatch in scanner...	commit \| commitdiff \| tree
2009-12-11	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2009-12-11	Erik Lindahl	Fixed errors in vmdio.c when compiled with MSVC8, 64bit	commit \| commitdiff \| tree
2009-12-06	Erik Lindahl	Version bump to 4.0.7	commit \| commitdiff \| tree
2009-12-06	Erik Lindahl	Added check for 3dnow that was removed when merging...	commit \| commitdiff \| tree
2009-12-06	Erik Lindahl	Merge branch 'release-4-0-patches' of git.gromacs.org...	commit \| commitdiff \| tree
2009-12-06	Erik Lindahl	Fixes (apple 64bit, charmm removal) to get gromacs...	commit \| commitdiff \| tree
2009-12-06	Erik Lindahl	Added auto-detection for 64bit support on macs	commit \| commitdiff \| tree
2009-12-04	Erik Lindahl	typo in name for gmx_mm_castsi128_ps()	commit \| commitdiff \| tree
2009-12-04	Erik Lindahl	Fixed gromacs wrapper fot _mm_castsi128_ps intrinsic...	commit \| commitdiff \| tree
2009-12-03	Erik Lindahl	Committed all-angle-constraint fix from Peter Eastman...	commit \| commitdiff \| tree
2009-12-03	Erik Lindahl	Committed all-angle-constraint fix from Peter Eastman...	commit \| commitdiff \| tree
2009-12-03	Erik Lindahl	Enabled separate PME nodes(threads) with thread-mpi...	commit \| commitdiff \| tree
2009-12-02	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2009-12-02	Erik Lindahl	Fixed mutex deadlock in gmx_fseek	commit \| commitdiff \| tree
2009-11-30	Erik Lindahl	removed debug print-statement	commit \| commitdiff \| tree
2009-11-30	Erik Lindahl	Added FFT code from Roland	commit \| commitdiff \| tree
2009-11-30	Erik Lindahl	Inital 2D PME decomposition changes	commit \| commitdiff \| tree
2009-10-21	Erik Lindahl	Removed charmm FF temporarily, to avoid people using...	commit \| commitdiff \| tree
2009-10-21	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2009-10-21	Erik Lindahl	Removed charmm files from git for now, since it wont...	commit \| commitdiff \| tree
2009-10-08	Erik Lindahl	Fixed MSVC build errors	commit \| commitdiff \| tree
2009-10-08	Erik Lindahl	Merge branch 'master' of git.gromacs.org:gromacs	commit \| commitdiff \| tree
2009-10-08	Erik Lindahl	Updated SSE2 intrinsics in preparation for new kernels.	commit \| commitdiff \| tree
2009-10-07	Erik Lindahl	Fixed memory leaks in surface code	commit \| commitdiff \| tree
2009-10-06	Erik Lindahl	Removed extra copy of all-vs-all kernels that was picked...	commit \| commitdiff \| tree
2009-10-05	Erik Lindahl	Moved static variables in pme.c into gmx_pme_t structure...	commit \| commitdiff \| tree
2009-09-27	Erik Lindahl	Added auto-detection for 64bit support on macs	commit \| commitdiff \| tree
2009-09-27	Erik Lindahl	Enabled file truncation on windows	commit \| commitdiff \| tree
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