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Fix domain decomposition setup for >46k cores
2012-04-06
Roland Schulz
F
ix do
m
ai
n
d
ecomposition setup for
>
4
6k cores
commit
|
commitdiff
|
tree
2012-03-10
Roland Schulz
Fix
typo in Cla
n
g CFl
a
gs
commit
|
commitdiff
|
tree
2012-03-04
R
o
lan
d
S
chulz
Minimal
s
upport f
o
r Clang
commit
|
commitdiff
|
tree
2012-02-21
Roland
S
chul
z
U
s
e Git
s
erver (
m
irror) to av
o
id f
e
tching p
r
oblem
s
commit
|
commitdiff
|
tree
2012-02-05
Roland Schulz
Fix
I
C
C on W
i
ndows Build
commit
|
commitdiff
|
tree
2012-02-01
Mark
A
braham
Fixed error
m
essage
to identi
f
y the c
o
rrect file
commit
|
commitdiff
|
tree
2012-01-31
Rolan
d
S
c
h
ulz
Append all
I
C
C
P
erformance flags only to Relea
s
e Flags
commit
|
commitdiff
|
tree
2012-01-31
Rola
n
d Schulz
Fix
signed/unsigned warnings
commit
|
commitdiff
|
tree
2012-01-18
Roland Schul
z
New approa
c
h fo
r
G
erritBuil
d
sc
r
ipt
commit
|
commitdiff
|
tree
2011-12-15
Roland Schulz
Using
MinSizeRel configuration and Rel
e
ase t
a
rget on
.
.
.
commit
|
commitdiff
|
tree
2011-12-15
Roland Schulz
T
e
sting external B
L
AS/LA
P
ACK
commit
|
commitdiff
|
tree
2011-12-15
Rolan
d
Schulz
Using 2 cores per
b
uild
o
n Win
d
ows
commit
|
commitdiff
|
tree
2011-12-11
Ro
l
and Schulz
Set -D
M
PI only
if compiled
for FA
H
commit
|
commitdiff
|
tree
2011-12-11
R
oland Schulz
Fixi
n
g
MSVC unsigned/signed wa
r
nings
commit
|
commitdiff
|
tree
2011-12-10
Rola
n
d Schulz
R
u
n t
e
sts also on Wi
n
dows
commit
|
commitdiff
|
tree
2011-12-09
Ro
l
a
n
d
Schulz
Only chec
k
tho
s
e a
t
om
s
for PBC which
are pa
r
t of sele
c
tion
.
.
.
commit
|
commitdiff
|
tree
2011-12-03
R
o
l
a
n
d Schu
l
z
Add
i
ng supp
o
rt for Windows bui
l
d
a
n
d differe
n
t CMake
.
.
.
commit
|
commitdiff
|
tree
2011-11-30
R
o
lan
d
Schulz
Ad
d
ing Gerrit Build description
commit
|
commitdiff
|
tree
2011-11-30
R
o
land
Sch
u
lz
Rem
o
ving
T
e
stBuildAll test
commit
|
commitdiff
|
tree
2011-11-28
R
o
lan
d
S
ch
u
l
z
F
i
x FFTW API u
s
a
ge
commit
|
commitdiff
|
tree
2011-11-24
Roland Schulz
Initial
i
ze variables to make GCC 4
.
6 not complain
commit
|
commitdiff
|
tree
2011-11-24
M
a
rk Abraham
Only an
a
l
y
se angle transitions f
o
r dihe
d
r
a
l angles
commit
|
commitdiff
|
tree
2011-11-24
Mark Abraham
Added protecti
v
e pr
e
pr
o
ce
s
sor direc
t
ives
commit
|
commitdiff
|
tree
2011-10-14
Ro
l
and Schulz
call to gmx_m
t
op_gene
r
ate_local
_
top is onl
y
r
equired
.
.
.
commit
|
commitdiff
|
tree
2011-08-10
Roland Schul
z
Make sure that ftell works co
r
rectl
y
f
or
f
iles opened
.
.
.
commit
|
commitdiff
|
tree
2011-05-15
Roland Schulz
corrected typo:
i
f(errno=EINVAL)
commit
|
commitdiff
|
tree
2011-02-04
Ro
l
and S
c
hulz
using set
_
mm_ps
to make pgi happy
commit
|
commitdiff
|
tree
2010-11-08
Roland Schulz
makin
g
err
o
r message for vm
d
io cle
a
rer (bug 598
)
commit
|
commitdiff
|
tree
2010-11-04
Roland Schu
l
z
print more
information
i
n case of lock error
commit
|
commitdiff
|
tree
2010-10-13
R
o
l
and
S
chul
z
make
sure that t
h
e MANPATH is not set to only GMXMANPATH
commit
|
commitdiff
|
tree
2010-10-11
Roland
Schulz
f
i
xed spelling
commit
|
commitdiff
|
tree
2010-10-08
R
o
l
a
nd
S
c
hulz
fixed
l
ocking of log file - broken by
d
750b9ce
commit
|
commitdiff
|
tree
2010-10-07
R
o
l
and
S
ch
u
lz
added
a
comm
e
nt
about assumpti
o
ns of ali
g
ned memory
commit
|
commitdiff
|
tree
2010-10-04
R
oland S
c
hulz
f
i
x
b
roken
check
for dlopen (by C
h
ristoph Jungh
a
ns
.
.
.
commit
|
commitdiff
|
tree
2010-10-01
Roland Sch
u
lz
fix FFTW3
interf
a
ce for non aligned
m
emory
commit
|
commitdiff
|
tree
2010-09-30
Roland Schulz
ma
d
e vm
d
io work with olde
r
a
p
i version (e
.
g
.
vmd 1
.
.
.
commit
|
commitdiff
|
tree
2010-09-27
Roland Schu
l
z
inc
l
ud
e
"e
r
r
or
.
h
" was not necce
s
sary a
n
d
c
aused problems
.
.
.
commit
|
commitdiff
|
tree
2010-09-26
Roland Sch
u
lz
1) gmx
_
fio_s
e
ek wa
s
not return
i
ng correc
t
return value
.
.
.
commit
|
commitdiff
|
tree
2010-09-23
Rola
n
d Sc
h
ulz
v
m
dio read the box
bu
t
d
idn
'
t
mark it as beeing read
.
.
.
commit
|
commitdiff
|
tree
2010-09-19
Rolan
d
Schulz
fixed
b
ox
vecto
r
read in vm
d
io
commit
|
commitdiff
|
tree
2010-08-26
R
o
l
a
nd Schul
z
Revert
"Pare
n
thesis around comp
a
r
i
sons and no
<= or
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
Roland S
c
h
u
lz
fi
x
logic to conv
e
rt
GM
X
_INTEGER_BIG_
E
N
DIAN to AR
C
H_IS_BIG_E
.
.
.
commit
|
commitdiff
|
tree
2010-08-27
Roland
S
chulz
P
a
ren
t
hes
i
s aro
u
nd compar
i
sons and no
<
=
or >= for x
l
c
commit
|
commitdiff
|
tree
2010-08-17
Ro
l
and Schulz
U
s
e always
D
I
R_SEPARAT
O
R
commit
|
commitdiff
|
tree
2010-08-17
Rol
a
nd
S
ch
u
l
z
Fix two Wind
o
ws fut
i
l b
u
gs:
commit
|
commitdiff
|
tree
2010-08-17
Roland
Sc
h
ulz
fixed sp
e
lling mistake introduced by 303d4543
commit
|
commitdiff
|
tree
2010-08-06
Roland
Sch
u
lz
M
e
r
g
e
b
r
anch 'release-4-
5
-pa
t
c
h
es' of ssh://git
.
g
r
omacs
.
.
.
commit
|
commitdiff
|
tree
2010-08-06
R
oland Schulz
c
l
ea
n
up:
G
MX_CG_INNERLOOP isn't used anymore
commit
|
commitdiff
|
tree
2010-08-01
Roland Schulz
include sys
/
ty
p
es before r
e
g
e
x
for broke
n
r
egex
.
h
commit
|
commitdiff
|
tree
2010-08-01
Roland
Sc
h
ulz
fix spel
l
i
n
g etc e
p
c
commit
|
commitdiff
|
tree
2010-08-01
Roland Sch
u
l
z
a
d
ded
m
i
s
sin
g
in
i
tialization
commit
|
commitdiff
|
tree
2010-07-03
Rolan
d
Sc
h
u
l
z
r
untime is
only available on PP mast
e
r (simmast
e
r
)
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
Roland
S
c
hulz
intia
l
i
z
ing structs (to avoid valgr
i
nd error m
e
s
s
ages)
commit
|
commitdiff
|
tree
2010-07-02
Roland
S
chulz
In
i
tializ
e
FFT data
.
So t
h
at Va
l
grind doesn't
c
omplain
commit
|
commitdiff
|
tree
2010-05-11
Ro
l
and Sch
u
lz
undo (ac
c
idential) change to FFTW_PATIENT
commit
|
commitdiff
|
tree
2010-05-11
Ro
l
and Sc
h
ulz
us
i
ng standa
r
d
G
M
X names for real/complex
commit
|
commitdiff
|
tree
2010-05-10
Roland
S
chulz
fixed retu
r
n f
o
r gmx_fft_many_
1
d*
commit
|
commitdiff
|
tree
2010-05-10
R
olan
d
S
c
hul
z
Me
r
ge br
a
n
ch 'm
a
st
e
r' of
g
it@git
.
g
rom
a
cs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-05-10
R
o
land
Schulz
ignor
e
Eclips
e
p
roject files
commit
|
commitdiff
|
tree
2010-05-10
Roland Schulz
al
w
ays define MPI_Comm, MPI_
R
e
q
uest, MPI_Group to avoid
.
.
.
commit
|
commitdiff
|
tree
2010-04-06
Rol
a
nd Schulz
use gmx_all
o
c_
a
ligned fo
r
fft data
commit
|
commitdiff
|
tree
2010-03-16
Roland Schulz
Com
p
iles now in serial
commit
|
commitdiff
|
tree
2010-03-16
Roland
Schulz
+ Removed all FF
T
W
d
epend
e
ncie
s
of FFT5D
commit
|
commitdiff
|
tree
2010-03-16
Roland Schul
z
callin
g
gmx_
f
ft for 1D FFTs inst
e
ad of directly cal
l
ing
.
.
.
commit
|
commitdiff
|
tree
2010-03-15
Rol
a
nd Sch
u
lz
directly
call fftw fo
r
s
eria
l
case
commit
|
commitdiff
|
tree
2010-03-15
Roland Schul
z
r
emoved memcpy
f
or bot
h
no
-
MPI and
1D decomposition
commit
|
commitdiff
|
tree
2010-03-08
R
o
land Schulz
c++ fixes
commit
|
commitdiff
|
tree
2010-03-08
Rol
a
nd Schulz
checking whether dlopen is working with static library
.
.
.
commit
|
commitdiff
|
tree
2010-03-07
Roland Schu
l
z
Merge branch 'master' of
g
it@git
.
gromacs
.
or
g
:gro
m
ac
s
commit
|
commitdiff
|
tree
2010-03-02
R
oland Schulz
Merge bra
n
ch 'release-4-0-patches'
commit
|
commitdiff
|
tree
2010-02-25
Roland Schulz
e
r
r
o
r message for -fit rot+trans
-
pbc
commit
|
commitdiff
|
tree
2010-02-25
Rola
n
d Schulz
e
rr
o
r message
f
or -fit rot+trans
-pbc
commit
|
commitdiff
|
tree
2010-02-08
R
o
land
Schulz
fix to
FLT_EPSILON
commit
|
commitdiff
|
tree
2010-02-08
R
o
land Sc
h
ulz
M
e
rge branch '2dpme' of git
@
git
.
gromacs
.
or
g
:
gromacs
.
.
.
commit
|
commitdiff
|
tree
2010-02-08
Roland Sc
h
ulz
fixe
d
C89 erro
s
, FLT_EPSILON
(
thanks Peter)
commit
|
commitdiff
|
tree
2010-01-18
Rol
a
nd
S
c
hul
z
correcte
d
:
openin
g
bin
a
ry file with rb
+
instea
d
of
r
+
commit
|
commitdiff
|
tree
2010-01-17
Roland Schulz
small
f
ix for using with fftw transpose
commit
|
commitdiff
|
tree
2010-01-14
Roland Schulz
Merg
e
bran
c
h
'
2dpme'
of git@git
.
g
r
om
a
cs
.
org:g
r
omacs
.
.
.
commit
|
commitdiff
|
tree
2010-01-14
Roland Schulz
up
d
a
t
ed co
m
ment
s
commit
|
commitdiff
|
tree
2010-01-14
Roland Schulz
r
e
duce
d
communica
t
ion an
d
F
F
T
t
o amoun
t
r
e
quired
commit
|
commitdiff
|
tree
2010-01-13
Ro
l
and
S
chulz
Merge br
a
nch 'tmp' i
n
to 2dpme
commit
|
commitdiff
|
tree
2010-01-13
Roland Schulz
improved debug
g
i
n
g
o
u
t
put
commit
|
commitdiff
|
tree
2010-01-12
Ro
l
and Schulz
u
pdated
a
c
o
m
ment t
o
r
e
f
lect
a
earlier
c
hange
commit
|
commitdiff
|
tree
2010-01-07
Rol
a
nd Schulz
fixed a bug
i
n f
f
t5
d
o
nly eff
e
cting
e
x
t
e
r
n
al test
p
ro
g
r
a
ms
commit
|
commitdiff
|
tree
2010-01-07
Roland Schulz
ma
d
e
e
vendist compile time o
p
tion
also i
n
fft5
d
commit
|
commitdiff
|
tree
2010-01-07
R
o
l
a
n
d
Schulz
Merg
e
b
r
anc
h
'2dpme' o
f
git@git
.
gr
o
macs
.
org:gromacs
.
.
.
commit
|
commitdiff
|
tree
2010-01-05
Roland Schulz
e
qua
l
l
y
distribute g
r
id
l
ines if not divi
s
able
commit
|
commitdiff
|
tree
2010-01-05
Ro
l
and Schulz
Un
d
o Michael's accidental commits with:
commit
|
commitdiff
|
tree
2009-12-30
Roland
S
chul
z
ma
d
e
f
ft5d compile ou
t
sid
e
o
f
GROMACS
again
commit
|
commitdiff
|
tree
2009-12-16
Roland Schulz
Merge commi
t
'orig
i
n
/m
a
ster' into
2dp
m
e
commit
|
commitdiff
|
tree
2009-12-16
R
o
land Sch
u
l
z
Added CMake code t
o
e
nable option
of building "old
.
.
.
commit
|
commitdiff
|
tree
2009-12-15
Rola
n
d Sc
h
u
lz
Merge branch '2dpme' o
f
git@git
.
g
r
o
macs
.
org:g
r
omacs
.
.
.
commit
|
commitdiff
|
tree
2009-12-15
R
oland Schulz
Restored 4?? x86_64_ss
e
kern
e
l
s
(needed for FA
H
)
.
I
ns
t
ead
.
.
.
commit
|
commitdiff
|
tree
2009-12-11
Rolan
d
Schul
z
Added
C
Mak
e
code to enable optio
n
of buildin
g
"old
.
.
.
commit
|
commitdiff
|
tree
2009-12-11
R
o
l
a
n
d
Sc
h
ulz
compiling with mp
i
a
n
d
c++
-
> set CXX to MPICC (as
.
.
.
commit
|
commitdiff
|
tree
2009-12-01
Roland Schulz
union instead of
t
wo poi
n
te
r
s to same address (br
a
kes
.
.
.
commit
|
commitdiff
|
tree
2009-12-01
Roland Schulz
file e
n
ded
t
w
i
ce
i
n Makefile by merge
commit
|
commitdiff
|
tree
2009-12-01
R
o
l
a
nd Schulz
Merge b
r
anch
'2dpme' of git@git
.
gr
o
macs
.
org:gromacs
.
.
.
commit
|
commitdiff
|
tree
2009-11-30
Rol
a
n
d Schulz
a
few more ff
o
pen/ffclos
e
fixes
commit
|
commitdiff
|
tree
2009-11-30
Roland
Schu
l
z
C++
s
t
y
le comm
e
nts
-> C
commit
|
commitdiff
|
tree
next