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Improve awkward handling of GMX_CUDA_TARGET* help
2017-08-17
Mark Abraham
Rep
l
ace c
o
ns
i
stency
checking w
i
th a
s
sertion
commit
|
commitdiff
|
tree
2017-08-16
Ma
r
k Abra
h
a
m
Parse u
s
er-s
u
pplied
GPU tas
k
a
s
signment only whe
n
needed
commit
|
commitdiff
|
tree
2017-08-16
Mark
A
braham
R
emove dupl
i
cate GPU
n
on-usage hint
commit
|
commitdiff
|
tree
2017-08-16
M
a
rk Abr
a
ham
Moved logging func
t
i
o
nali
t
y into GPU
u
s
a
ge report
commit
|
commitdiff
|
tree
2017-08-10
Mark Abrah
a
m
Clarify d
a
ta flow in GPU task assignm
e
nt
commit
|
commitdiff
|
tree
2017-08-07
M
a
rk Abr
a
h
a
m
Fix include dependency for getenv
commit
|
commitdiff
|
tree
2017-08-07
Mark Abraham
S
implified handling of G
P
U device IDs
commit
|
commitdiff
|
tree
2017-08-06
Mark Abr
a
ham
Simplify r
e
s
o
urce-division efficiency c
h
e
ck
commit
|
commitdiff
|
tree
2017-08-06
Mark
A
braham
S
p
l
it pr
i
nthar
d
ware from detecthardware
commit
|
commitdiff
|
tree
2017-08-06
Mark Abr
a
ham
Decouple task assig
n
ment fro
m
task exec
u
t
i
on
commit
|
commitdiff
|
tree
2017-08-04
Mark Abraham
Stop using hwinfo_g for
r
e
p
orting
c
ode
commit
|
commitdiff
|
tree
2017-08-03
M
a
r
k
A
b
raha
m
Removed unused include s
t
atements
commit
|
commitdiff
|
tree
2017-08-01
Mark Abraham
Intr
o
d
u
ced Mdrunner
high
-
level class
commit
|
commitdiff
|
tree
2017-07-27
Mark Abraham
Enhance c
m
a
ke an
d
releng handlin
g
o
f
GMX_USE_RDTSCP
commit
|
commitdiff
|
tree
2017-07-24
Mark Abrah
a
m
Sep
a
rated
responsibility for c
o
nsis
t
ency check
i
ng
commit
|
commitdiff
|
tree
2017-07-24
Mar
k
Abrah
a
m
Remove un
n
ecessar
y
G
P
U
chec
k
ing code
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
C
l
eaned
up bUs
e
G
p
u in runner
commit
|
commitdiff
|
tree
2017-07-20
Mark Abraham
Stop duplicat
e
prin
t
i
ng of
det
e
c
ted GPUs
commit
|
commitdiff
|
tree
2017-07-20
Ma
r
k
Abraham
Fix use of GMX
_
S
I
MD in ow
n
-f
f
tw build
commit
|
commitdiff
|
tree
2017-07-19
Ma
r
k Abraham
Ma
d
e
p
o
st-sub
m
it
con
f
ig to t
e
st c
l
ang+
o
p
e
nmp
.
commit
|
commitdiff
|
tree
2017-07-19
Mark
A
braham
I
mprov
e
CMa
k
e
implementation for GMX_
S
IMD
commit
|
commitdiff
|
tree
2017-07-18
Ma
r
k Abraham
Convert
e
d
s
om
e
const pointer
s
i
nto const referen
c
es
.
.
.
commit
|
commitdiff
|
tree
2017-07-18
Mark Abraham
Eliminated pick_nbn
x
n_resour
c
es
commit
|
commitdiff
|
tree
2017-07-14
Mark Abr
a
ham
Imple
m
e
n
ted grompp -po f
o
r options-style
mdp h
a
n
d
ling
commit
|
commitdiff
|
tree
2017-07-14
Ma
r
k Abraham
C
l
e
an up cmake build
h
ost
d
et
e
ction
commit
|
commitdiff
|
tree
2017-07-13
Ma
r
k Abraham
Clean up gmx_m
d
ru
n
()
commit
|
commitdiff
|
tree
2017-07-13
Mark A
b
raham
C
leaned up mdrunner_start
_
t
hread
s
commit
|
commitdiff
|
tree
2017-07-13
Mark
Abraha
m
More upda
t
es to testing matrix
commit
|
commitdiff
|
tree
2017-07-07
Mark Abrah
a
m
Refactor erro
r
handlin
g
in init_gpu
commit
|
commitdiff
|
tree
2017-07-06
M
a
rk A
b
r
aham
Si
m
plify
gmx_gpu_
o
pt_t
commit
|
commitdiff
|
tree
2017-07-04
Mar
k
Abraham
Clean up
pick_nbnxn_resources
commit
|
commitdiff
|
tree
2017-07-01
Mark Abraham
Cle
a
ned up GPU emulatio
n
l
o
g
ic
commit
|
commitdiff
|
tree
2017-06-28
Mark
A
bra
h
a
m
C
l
eaned up high-level
b
oolean variab
l
e naming
commit
|
commitdiff
|
tree
2017-06-28
Mark Abra
h
am
M
er
g
e branch re
l
ease-2
0
1
6
commit
|
commitdiff
|
tree
2017-06-27
Ma
r
k
A
b
raham
Minor improvements to test configs
commit
|
commitdiff
|
tree
2017-06-22
M
ark Abraham
Con
s
o
l
ida
t
ed
l
ogic
f
or choosing
number of thr
e
ad-MPI
.
.
.
commit
|
commitdiff
|
tree
2017-06-22
Mark Abraham
Replace misnamed
n
b
n
xn_gpu_acc
e
leration_su
p
ported
commit
|
commitdiff
|
tree
2017-06-22
Mark A
b
rah
a
m
Consolidate and fix l
o
gi
c
f
o
r mdrun
-nb and -gpuid
commit
|
commitdiff
|
tree
2017-06-21
Mark Abraham
Reform ngpu vari
a
ble
commit
|
commitdiff
|
tree
2017-06-21
Mark A
b
rah
a
m
R
em
o
ve bUser
S
etGpu
I
ds field
commit
|
commitdiff
|
tree
2017-06-14
Mark Abraham
Simp
l
i
f
y repo
r
ting from i
n
it_
g
pu
commit
|
commitdiff
|
tree
2017-06-12
Mar
k
Abraham
Move gmx
_
parse
_
gpu_id out of checking
f
uncti
o
n
commit
|
commitdiff
|
tree
2017-05-31
Mark
Ab
r
aha
m
N
e
w quote
commit
|
commitdiff
|
tree
2017-05-30
Mar
k
Abraham
Fix NVML err
o
r
messages
commit
|
commitdiff
|
tree
2017-05-27
M
ark Abraha
m
Quotes
f
r
om
Gottingen wo
r
ks
h
op
commit
|
commitdiff
|
tree
2017-05-26
Ma
r
k
Abraha
m
Test in
v
sixthroo
t
function as intende
d
commit
|
commitdiff
|
tree
2017-05-15
M
a
rk Ab
r
a
h
am
Updated
use of compiler sp
e
cifiers in testing
commit
|
commitdiff
|
tree
2017-05-15
M
ark Abr
a
ham
Updated use of gcc-5
s
pecifiers
commit
|
commitdiff
|
tree
2017-05-15
Mark A
b
ra
h
am
Up
d
ate clang
s
tatic
anal
y
zer s
l
ave
to use vers
i
on
4
commit
|
commitdiff
|
tree
2017-05-14
Mark Abraham
Update
c
l
a
ng
-
4
commit
|
commitdiff
|
tree
2017-05-09
Mark Abraham
Fix formattin
g
of
M
KL cmake docs
commit
|
commitdiff
|
tree
2017-05-09
Mark Abraham
Mer
g
e br
a
nch
r
elea
s
e-2016
commit
|
commitdiff
|
tree
2017-05-09
Mar
k
Abraham
C
l
eaned up memo
r
y usage
i
n
g
mx t
r
a
j and trjconv
commit
|
commitdiff
|
tree
2017-04-22
Mark Ab
r
a
ha
m
Clean up memory usag
e
w
i
th
o
env and xvg writing
commit
|
commitdiff
|
tree
2017-04-17
Ma
r
k Abraham
M
i
n
o
r change to G
P
U compatibility reportin
g
handling
commit
|
commitdiff
|
tree
2017-04-17
Mark Abrah
a
m
Propose a pos
t
-su
b
mit m
a
t
r
ix
commit
|
commitdiff
|
tree
2017-04-03
M
a
r
k Abraham
R
e
mo
v
e do_pbc_fi
r
s
t
commit
|
commitdiff
|
tree
2017-03-31
Mark Abraham
Merge branch release
-
2016
commit
|
commitdiff
|
tree
2017-03-29
M
a
rk
Abr
a
h
a
m
Fix para
m
eter
d
escription for dih
e
d
r
a
l
_r
e
s
train
t
s
commit
|
commitdiff
|
tree
2017-03-22
Mark Abraham
Add section to user guide
f
or
m
a
naging s
i
mul
a
tions
commit
|
commitdiff
|
tree
2017-03-19
Mark
Ab
r
ah
a
m
Fi
x
st
r
ing
h
and
l
ing f
o
r gcc 7
commit
|
commitdiff
|
tree
2017-03-14
Mar
k
Abrah
a
m
Merge
branch rele
a
se-2016
commit
|
commitdiff
|
tree
2017-03-14
Mark
A
braham
Bumped
v
ersio
n
to
prepare f
o
r ne
x
t pa
t
ch re
l
ease
commit
|
commitdiff
|
tree
2017-03-13
Ma
r
k Abraha
m
V
e
rsion 2016
.
3
commit
|
commitdiff
|
tree
2017-03-13
Mark Abraham
M
o
der
n
i
ze write_in
p
fi
l
e
commit
|
commitdiff
|
tree
2017-03-13
Mark Abraham
M
ode
r
nize read_i
n
pfile
commit
|
commitdiff
|
tree
2017-03-13
Mark Ab
r
aham
Tes
t
s for grompp -f -po
commit
|
commitdiff
|
tree
2017-03-09
Mark Abraham
R
e
f
ac
t
or GP
U
se
l
ection handli
n
g
commit
|
commitdiff
|
tree
2017-03-07
Ma
r
k
Abraham
Fix mino
r
issues in
g
mx traj
-av -af
commit
|
commitdiff
|
tree
2017-03-04
Mar
k
Abrah
a
m
Fixes for
x
l
comp
i
lers
13
.
1
.
5 o
n
P
o
w
er8
commit
|
commitdiff
|
tree
2017-02-20
M
a
rk Abraham
A
d
d tests f
o
r
old
gmx en
e
rgy fu
n
c
tional
i
t
y
commit
|
commitdiff
|
tree
2017-02-17
Mar
k
Abraham
Use gmx::Mute
x
and gmx:
:
lock_guard to fi
x
some issues
commit
|
commitdiff
|
tree
2017-02-15
Mark
A
braham
Me
r
ge bra
n
ch relea
s
e-5-1 into release-
2
0
16
commit
|
commitdiff
|
tree
2017-02-14
M
ark Abraham
Fix
h
andlin
g
of previous viria
l
s
commit
|
commitdiff
|
tree
2017-02-14
M
a
r
k Abraham
Reduce c
o
mpil
a
t
ion
coupling
commit
|
commitdiff
|
tree
2017-02-10
Mark Abraham
Correc
t
ed output of gmx do_dssp -sc
commit
|
commitdiff
|
tree
2017-02-09
Mark Abraham
Co
m
plete the remo
v
al of
statef
u
l RNG
commit
|
commitdiff
|
tree
2017-02-09
Mar
k
Abr
a
ham
Improv
e
d
state_c
h
ang
e
_natoms and used it
m
ore
commit
|
commitdiff
|
tree
2017-02-09
Mark
Abraham
Remove EST_DISTR from s
t
ate
.
h
commit
|
commitdiff
|
tree
2017-02-09
Mar
k
Ab
r
aham
Enh
a
nce warn
i
np
commit
|
commitdiff
|
tree
2017-02-08
Mar
k
Abrah
a
m
E
xtend se
r
ializa
t
ion to
gmx_int64_t
commit
|
commitdiff
|
tree
2017-02-08
Mar
k
Abraham
Remove
d
o
cs for
un
i
m
p
lement
e
d trjconv -cluste
r
c
e
n
t
er
commit
|
commitdiff
|
tree
2017-02-08
M
a
rk Abraham
Create
a
p
plie
d
-f
o
rces modu
l
e g
r
oup
commit
|
commitdiff
|
tree
2017-02-08
Ma
r
k Abraha
m
Giv
e
MDModules responsibility
f
or
option handl
i
ng
commit
|
commitdiff
|
tree
2017-02-07
Mark Abraha
m
Merge branch release-2016
commit
|
commitdiff
|
tree
2017-02-07
Ma
r
k Ab
r
aham
Bumped vers
i
o
n t
o
p
r
epare for
next patch
release
commit
|
commitdiff
|
tree
2017-02-07
Mark Abraham
Introdu
c
ed system preparation
s
ection to user g
u
i
de
commit
|
commitdiff
|
tree
2017-02-07
Mark Abraham
Version 2016
.
2
commit
|
commitdiff
|
tree
2017-02-05
Mark Abraham
M
erge branch releas
e
-
5
-
1 into relea
s
e
-
2016
commit
|
commitdiff
|
tree
2017-02-03
Mark
A
braham
Re
m
ove typede
f
s
truc
t
i
n
some md
t
ypes f
i
le
s
commit
|
commitdiff
|
tree
2017-02-02
Mark Abraham
Clarify use
of tau-p
and
p
co
u
pl
t
ype
commit
|
commitdiff
|
tree
2017-01-31
M
ark Ab
r
aham
Me
r
ge branch release-5
-
1 into rel
e
a
s
e-
2
016
commit
|
commitdiff
|
tree
2017-01-30
Mark
A
braham
Fix multi-d
o
main re
r
uns
commit
|
commitdiff
|
tree
2017-01-30
Mark Abraham
Don't
p
rint in
v
al
i
d perfor
m
ance
data
commit
|
commitdiff
|
tree
2017-01-23
Mark Abrah
a
m
Stopped
h
eader files including state
.
h
commit
|
commitdiff
|
tree
2017-01-22
Mark
A
brah
a
m
Fixed gmx rms
f
-q -oq
.
commit
|
commitdiff
|
tree
2017-01-21
M
a
rk Abraham
Removed init_sta
t
e
commit
|
commitdiff
|
tree
2017-01-20
Mark A
b
raham
Initialize GMX_*_LIBRARIE
S
c
make variables earlier
commit
|
commitdiff
|
tree
2017-01-14
Ma
r
k Abrah
a
m
Merge branch
r
eleas
e
-2016
commit
|
commitdiff
|
tree
2017-01-06
Mark Abr
a
ha
m
Doc
u
ment ISerializer class
commit
|
commitdiff
|
tree
next