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Merge "Added fatal error for constraints + L-BFGS minimizer" into release-4-5-patches
2013-01-15
C
hri
s
toph Jung
h
a
ns
Me
r
ge "Added fata
l
error
fo
r
constrain
t
s
+ L-BFGS
m
inimizer
.
.
.
commit
|
commitdiff
|
tree
2012-11-20
Christop
h
Jung
h
ans
Merge "
F
ixes bug
i
n g
_
hbond th
a
t
m
akes i
t
prod
u
ce
f
atal
.
.
.
commit
|
commitdiff
|
tree
2012-10-27
Christoph Junghans
Merge
"
F
ix large file support" in
t
o release-4-5-patches
commit
|
commitdiff
|
tree
2012-09-27
Christoph
J
u
nghans
Merge "Fixe
d
an off-by-one er
r
o
r in
a
t
om coun
t
ing i
n
.
.
.
commit
|
commitdiff
|
tree
2012-09-25
Christ
o
ph J
u
n
g
hans
Merge "Fi
x
REMD use of gmx_la
r
ge_int_t for #s
t
e
ps variable
.
.
.
commit
|
commitdiff
|
tree
2012-09-14
C
h
r
istoph Jung
h
ans
Me
r
ge "fixed r
e
cent bug
with
grompp
chec
k
for P-R P
.
.
.
commit
|
commitdiff
|
tree
2012-08-20
Christoph Junghans
Merge "Fix co
o
rdi
n
ate is zero check in gmxcheck" into
.
.
.
commit
|
commitdiff
|
tree
2012-08-07
Chris
t
oph
J
u
nghans
M
erge "fixed i
n
correct TPI re
s
ults with dy
n
amic bo
x
.
.
.
commit
|
commitdiff
|
tree
2012-08-06
C
hri
s
to
p
h Ju
n
ghans
M
erge "Added comment in get_structure ab
o
u
t
whic
h
struct
u
res
.
.
.
commit
|
commitdiff
|
tree
2012-07-09
C
h
rist
o
ph
J
u
nghans
Merge "Fixed bu
g
i
n sfactor
.
c that make
s
g
_rdf -sq
.
.
.
commit
|
commitdiff
|
tree
2012-06-19
Christoph J
u
n
g
ha
n
s
Merge
"Quiet linker
o
n BlueGe
n
e
"
i
n
to release-4-5-patches
commit
|
commitdiff
|
tree
2012-06-18
Chr
i
stoph J
u
nghans
Merge "Fix g_l
i
e
c
o
un
t
ing last frame twice" int
o
release
.
.
.
commit
|
commitdiff
|
tree
2012-06-15
Ch
r
ist
o
p
h Junghans
Merge "Work a
r
ound failur
e
o
f
endianne
s
s
testing
o
n
.
.
.
commit
|
commitdiff
|
tree
2012-06-08
Christoph Ju
n
ghans
M
e
rg
e
"Ad
d
ed more
suggested s
t
rategies to error messag
e
.
.
.
commit
|
commitdiff
|
tree
2012-06-01
Christoph Jungh
a
ns
Mer
g
e "Replace
o
ur fftpack versi
o
n
w
i
th Numpy's version
.
.
.
commit
|
commitdiff
|
tree
2012-05-28
Ch
r
ist
o
p
h
Junghans
M
erge
"Continuing
t
o fix
t
hreading o
n
C
y
g
w
i
n" into
.
.
.
commit
|
commitdiff
|
tree
2012-04-09
Christoph Junghans
Merge "Documentation and error message enha
n
cemen
t
s
.
.
.
commit
|
commitdiff
|
tree
2012-04-09
Christoph Junghans
Me
r
ge "Consolida
t
e
d documen
t
ation
o
f
.
md
p
restraint
.
.
.
commit
|
commitdiff
|
tree
2012-03-18
Christoph Junghans
Merge "Warnings against equilibrating wit
h
P
-
R P-coup
l
i
ng
.
.
.
commit
|
commitdiff
|
tree
2012-03-15
C
h
r
istoph Ju
n
g
hans
Merg
e
"
C
larified wordin
g
of do
c
ume
n
tation" into
r
elease
.
.
.
commit
|
commitdiff
|
tree
2012-03-12
Christ
o
ph Jun
g
han
s
M
e
rge "More editoria
l
fixes to tool documentation"
.
.
.
commit
|
commitdiff
|
tree
2012-02-10
Chri
s
toph Jungha
n
s
Merg
e
"Fixed bug
with COM m
o
tio
n
r
e
mov
a
l on part
o
f
.
.
.
commit
|
commitdiff
|
tree
2012-02-01
C
h
r
i
s
toph Junghans
Merge "Fi
x
s
i
gn
e
d/unsig
n
ed warnings" i
n
t
o
r
elease-4
.
.
.
commit
|
commitdiff
|
tree
2012-01-15
Christoph Ju
n
g
hans
Merge "Added CMak
e
Tool
c
hai
n
f
i
le for Bl
u
e
Gene/P" into
.
.
.
commit
|
commitdiff
|
tree
2012-01-04
Christoph Jung
h
ans
Merg
e
"
D
ocument
e
d the
f
unction of g_clu
s
ter -cl
-
noav
.
.
.
commit
|
commitdiff
|
tree
2011-12-19
C
h
rist
o
p
h Jun
g
hans
Set GMX_*_AS
M
true if GMX_AC
C
ELERATION !=
a
u
to
commit
|
commitdiff
|
tree
2011-11-08
Christoph Ju
n
g
hans
M
e
rge "
F
ixed bug #830
(
s
eg
v
in do_dssp)
"
into re
l
ease
.
.
.
commit
|
commitdiff
|
tree
2011-10-20
Chris
t
oph Junghan
s
Merge "Fixes
for GB
ke
r
ne
l
" into rel
e
ase-4-5-patch
e
s
commit
|
commitdiff
|
tree
2011-07-01
Christoph Junghans
dl lib was missi
n
g in li
b
gmx
.
p
c
if GMX_
D
LOPEN is enabl
e
d
commit
|
commitdiff
|
tree
2011-06-16
Christoph J
u
nghans
cma
k
e: rename LI
B
to GMXLIB to avoid co
n
flict with
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Chris
t
oph Ju
n
ghans
Merge
b
r
anch 'release-4-5
-
p
atch
e
s' of git:/
/
git
.
gro
m
acs
.
.
.
commit
|
commitdiff
|
tree
2011-06-09
Christoph Junghans
Added
a
comment wh
e
re bPhobics
c
o
m
e
s from
commit
|
commitdiff
|
tree
2011-06-08
Christ
o
p
h Jung
h
ans
r
emoved duplicated bPhobics
func
t
ion (t
h
x to
Francois
.
.
.
commit
|
commitdiff
|
tree
2011-06-08
C
h
ristoph J
u
nghans
cmake
:
remove selection/tes
t
*
f
rom gmxlib sourc
e
s
commit
|
commitdiff
|
tree
2011-03-03
Christop
h
Jungha
n
s
fix
e
d a
t
ypo i
n
cmake pkg-co
n
fi
g
fil
e
s
commit
|
commitdiff
|
tree
2011-01-23
Christoph Jung
h
ans
cmake: a
d
ded GMX_XML to fully
disable xml support
commit
|
commitdiff
|
tree
2011-01-23
Christoph Junghans
cmake: ad
d
s
u
pport for e
x
te
r
nal blas/lap
a
c
k
commit
|
commitdiff
|
tree
2010-12-10
Chri
s
toph Junghans
F
i
xed wrong path o
r
dering in GMX
.
ba
s
h int
r
o
d
uced in
.
.
.
commit
|
commitdiff
|
tree
2010-11-29
Christoph Jungh
a
ns
GMXR
C
.
* - fixed bug #614
commit
|
commitdiff
|
tree
2010-11-29
Christoph Jun
g
hans
added
power6 flags from Markus Rampp
commit
|
commitdiff
|
tree
2010-11-24
Christoph Jungha
n
s
c
o
nfigure: build s
h
a
r
ed
lib
s
unless mpi
e
nabled (bug
.
.
.
commit
|
commitdiff
|
tree
2010-10-08
Christoph Jung
h
ans
CM
a
ke: another fortran fi
x
commit
|
commitdiff
|
tree
2010-10-06
C
hristoph Junghans
CMa
k
e:
f
o
r
tra
n
f
ix
commit
|
commitdiff
|
tree
2010-10-05
Chr
i
stoph Jung
h
ans
cmake: give openmm default suffixes
commit
|
commitdiff
|
tree
2010-10-05
Christoph Junghans
cmake:
i
nstall-mdrun should not install pkg
-
config
.
.
.
commit
|
commitdiff
|
tree
2010-09-30
Chr
i
st
o
p
h Junghans
c
o
nf
i
gure: added '--disable-la-
f
iles' option
commit
|
commitdiff
|
tree
2010-09-17
Christ
o
ph J
u
nghan
s
configure: power6
a
nd
fortran ca
n
now be enabled a
t
.
.
.
commit
|
commitdiff
|
tree
2010-09-17
Chris
t
o
ph
Junghans
config
u
re: fortran kernels can also be compiled
w
it
h
.
.
.
commit
|
commitdiff
|
tree
2010-09-15
Chri
s
toph
Junghans
co
n
figure: add
e
d miss
i
ng quotes
commit
|
commitdiff
|
tree
2010-09-15
Christoph Junghans
Fixe
d
synchron
i
zati
o
n cou
n
ter u
p
dat
e
fo
r
pwr6 kernels
commit
|
commitdiff
|
tree
2010-08-30
Chris
t
oph Junghans
fixe
d
Templ
a
t
e
.
mak
commit
|
commitdiff
|
tree
2010-08-30
Christoph Junghans
fixed a typo in old libxd
r
f fortr
a
n wr
a
p
p
er
commit
|
commitdiff
|
tree
2010-08-30
Chris
t
oph Junghans
f
orcerec
.
c: added
m
is
s
i
n
g int
commit
|
commitdiff
|
tree
2010-08-27
Christoph Ju
n
gha
n
s
ad
d
ed a missin
g
in
c
lude to sighandler
.
h
commit
|
commitdiff
|
tree
2010-08-23
C
h
ristoph Jungh
a
ns
fixed 2 typos in head
e
rs
commit
|
commitdiff
|
tree
2010-08-23
Christoph
J
un
g
hans
Fixed th
r
eads
f
lags
in pc files for au
t
otool
s
commit
|
commitdiff
|
tree
2010-08-18
Chris
t
oph J
u
nghans
cmak
e
: do not suffix scripts
commit
|
commitdiff
|
tree
2010-08-18
C
h
r
ist
o
p
h Jun
g
hans
cmake: add so version t
o
libs
commit
|
commitdiff
|
tree
2010-08-18
C
h
r
i
st
o
ph Jung
h
ans
cmake: make demux
.
pl and
x
plor2gmx
.
pl bei
n
g installed
.
.
.
commit
|
commitdiff
|
tree
2010-08-18
Chris
t
oph
J
u
nghans
port l
i
b
s
uf
f
ixes to cmake
commit
|
commitdiff
|
tree
2010-08-17
Christoph Jungh
a
ns
store custom GMX de
f
ines in pkgconfig f
i
les for cmake
commit
|
commitdiff
|
tree
2010-08-17
C
h
ri
s
t
oph
Junghans
fixe
d
s
ome out
o
f s
r
cdir
buil
d
issue wi
t
h cmake and
.
.
.
commit
|
commitdiff
|
tree
2010-08-17
Christoph
J
un
g
ha
n
s
s
tor
e
c
ustom
GM
X
d
e
fin
e
s
in pkgc
o
nfig files for aut
o
t
ools
commit
|
commitdiff
|
tree
2010-08-17
Christoph
Jungh
a
n
s
sp
l
it li
b
s in Templat
e
.
m
a
k
commit
|
commitdiff
|
tree
2010-08-17
Chris
t
o
ph Jungh
a
n
s
make cmak
e
install a CMake
L
ists
.
txt
f
o
r the
t
emplate
.
.
.
commit
|
commitdiff
|
tree
2010-08-02
Chris
t
o
ph J
u
ngha
n
s
make GMXRC
.
{bash,csh,zsh} expo
r
t
PKG_C
O
NFIG_PATH
commit
|
commitdiff
|
tree
2010-08-02
Christoph Junghans
fixed link
i
ng of inputre
c
.
h
commit
|
commitdiff
|
tree
2010-07-30
C
h
r
istoph
J
unghans
cm
a
ke: make GSL fully
option
a
l
commit
|
commitdiff
|
tree
2010-07-30
C
hr
i
stoph
J
unghans
merged
p
art
s
of th
e
debi
a
n pat
c
h set
commit
|
commitdiff
|
tree
2010-07-30
C
h
ris
t
oph Junghans
removed old mo
t
if
stuff
f
r
o
m
stat
u
til
.
h
commit
|
commitdiff
|
tree
2010-07-30
Christoph Jun
g
h
a
ns
rem
o
ve som
e
deprecated he
a
ders, which are not
u
s
e
d
.
.
.
commit
|
commitdiff
|
tree
2010-07-30
Christoph J
u
nghans
s
w
itched to
the right gs
l
defi
n
e (HAVE_LIBGSL) i
n
c
m
ake
.
.
.
commit
|
commitdiff
|
tree
2010-07-30
Chr
i
stoph Junghans
added
r
i
g
h
t thread
s
flag
i
n cmake pkg-co
n
f
i
g fi
l
e
s
commit
|
commitdiff
|
tree
2010-07-29
C
h
r
i
stoph Junghans
cmake creates pc f
i
les n
o
w
commit
|
commitdiff
|
tree
2010-07-29
Christoph
Junghans
tell acloc
a
l
about config
dir
commit
|
commitdiff
|
tree
2010-07-29
Christo
p
h Junghans
Merge branch 'maste
r
' of
g
it://git
.
gromacs
.
org/gromacs
commit
|
commitdiff
|
tree
2010-07-29
Chr
i
stoph Junghans
added configure check for 'ln -s'
commit
|
commitdiff
|
tree
2010-07-28
C
h
ristoph
J
ungh
a
n
s
Merge branch 'm
a
ster' of
git:/
/
git
.
grom
a
cs
.
org/gromacs
commit
|
commitdiff
|
tree
2010-07-28
Christoph Jun
g
han
s
updated templat
e
p
r
o
g
r
am to new
h
eade
r
style and
added
.
.
.
commit
|
commitdiff
|
tree
2010-07-28
Christoph Jun
g
hans
added
small
s
cript to check for u
s
abil
i
ty of h
e
ad
e
rs
commit
|
commitdiff
|
tree
2010-07-28
Christoph Ju
n
ghans
fix
e
d rest of in
c
lude typos in headers
commit
|
commitdiff
|
tree
2010-07-28
Chr
i
s
t
oph
J
u
n
ghans
fixed some includ
e
typo
s
in he
a
ders
commit
|
commitdiff
|
tree
2010-07-27
Chr
i
st
o
ph
Junghans
added -no-undefined to LDFLAGS of all
l
ibs
commit
|
commitdiff
|
tree
2010-07-27
Ch
r
istoph Ju
n
g
hans
make --enable-po
w
er6 compile aga
i
n
(bug
#
475)
commit
|
commitdiff
|
tree
2010-07-22
Chr
i
sto
p
h Jungh
a
ns
fixe
d
some include typos in
h
e
aders
commit
|
commitdiff
|
tree
2010-02-26
Chr
i
s
toph Junghans
I
n
st
a
ll pkgcon
f
ig files for
l
ib
r
a
ries (bug #37
0
)
.
commit
|
commitdiff
|
tree
2010-02-18
Christoph Junghans
Dep issues
with libgmxpre
p
roc
e
ss (#39
2
, #395)
.
commit
|
commitdiff
|
tree