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Fix icc warning in post-submit
2018-04-23
Szil
á
rd Páll
Fix
icc wa
r
ning in post-su
b
mit
commit
|
commitdiff
|
tree
2018-04-21
Szilá
r
d
P
áll
Ad
d
pos
t
-submit w
i
th
A
RM HPC Tool
c
hain
commit
|
commitdiff
|
tree
2018-04-21
S
z
il
á
rd Páll
Tweak PME ru
n
mode c
h
ecks
commit
|
commitdiff
|
tree
2018-04-20
S
zilár
d
Páll
Minor fi
x
for pre-submit
m
atrix docs
commit
|
commitdiff
|
tree
2018-04-19
S
zilár
d
Páll
M
o
v
e
t
h
e PME GPU clea
r
i
n
g
to the end of
the s
t
ep
commit
|
commitdiff
|
tree
2018-04-16
Szil
á
rd Páll
Add post
-
submit test with hwloc
o
ff
commit
|
commitdiff
|
tree
2018-04-13
Szilárd
P
ál
l
U
s
e trivalue option for GMX_HWLOC
commit
|
commitdiff
|
tree
2018-04-05
Szil
á
rd P
á
l
l
Refactor cj prel
o
ad i
n
the
n
o
n
bo
n
ded OpenCL
kern
e
l
s
commit
|
commitdiff
|
tree
2018-03-29
Szilárd Pál
l
Twe
a
k/enable icc 18
p
ost-submit
t
ests
commit
|
commitdiff
|
tree
2018-03-29
Szilárd Pál
l
Switch CUDA 9
.
0/gcc 5
t
est to CUDA 9
.
1/gcc 6
commit
|
commitdiff
|
tree
2018-03-13
Szilá
r
d Páll
R
e
qui
r
e OpenCL 1
.
2
commit
|
commitdiff
|
tree
2018-03-13
Szilár
d
Páll
Fix clan
g
6
.
0 with CUDA 9
.
0
commit
|
commitdiff
|
tree
2018-03-12
S
zilárd Páll
Avoi
d
icc-s
p
ecific -ma
r
c
h
=core-avx2 flag with gcc/c
l
a
n
g
commit
|
commitdiff
|
tree
2018-03-06
Szi
l
árd Pál
l
Extend
"
Finding out how to run
m
drun better
"
section
commit
|
commitdiff
|
tree
2018-03-05
Szilárd Páll
A
dd to the c
o
ntri
b
ut
o
r s
e
ct
i
on
commit
|
commitdiff
|
tree
2018-02-21
Szilárd Páll
Switch pre-subm
i
t CUD
A
8
.
0 tes
t
t
o
9
.
0
commit
|
commitdiff
|
tree
2018-02-20
Szilárd Pál
l
A
void
a
bo
r
ting mdrun when GPU sanity
c
heck de
t
ec
t
s
.
.
.
commit
|
commitdiff
|
tree
2018-02-14
S
zilárd Pá
l
l
Re
m
ove barriers preventing textur
e
re
f
eren
c
e ra
c
es
commit
|
commitdiff
|
tree
2018-02-12
Szilárd
Páll
R
e
move si
n
gle
/
m
ulti compilat
i
on
unit sw
i
tching l
o
gi
c
commit
|
commitdiff
|
tree
2018-02-12
Szilárd Páll
Remove
texture
r
efe
r
ence
suppo
r
t in t
h
e CU
D
A
commit
|
commitdiff
|
tree
2018-01-12
S
z
ilárd P
á
ll
Call GPU p
r
ofiler res
e
t on
s
epar
a
t
e
P
ME ran
k
s
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Use
r
guide updates to GPU se
c
tion
commit
|
commitdiff
|
tree
2018-01-10
Szilár
d
P
áll
Re
l
ease
n
otes tweaks
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Inst
a
ll guide
u
pdat
e
s
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
árd Páll
Environment variable docs maintenan
c
e
commit
|
commitdiff
|
tree
2017-12-10
Szilárd Páll
Disable def
a
ult-on NVML suppor
t
in
C
Make
commit
|
commitdiff
|
tree
2017-12-06
Szilá
r
d
Páll
Implement al
t
ernating GPU wait
commit
|
commitdiff
|
tree
2017-11-28
Szi
l
á
rd Pá
l
l
S
ep
a
rate loc
a
l GPU NB w
a
it f
r
o
m
emu
l
a
tion launch
commit
|
commitdiff
|
tree
2017-11-28
Szilárd Pál
l
Refactor GPU rolling prune launch
commit
|
commitdiff
|
tree
2017-11-27
Szilárd Páll
Time F
F
T/gather
i
n m
i
xed mode
commit
|
commitdiff
|
tree
2017-11-24
Szilárd Páll
Add GPU sharing post-su
b
mit config
commit
|
commitdiff
|
tree
2017-11-23
Szilárd Páll
Move GPU FFT/gather launch aft
e
r
GPU nonbo
n
deds
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
U
se -mavx
2
-mfm
a
inste
a
d of -march wit
h
AVX2
commit
|
commitdiff
|
tree
2017-11-07
S
z
ilá
r
d Páll
M
erge co
m
mon nbnxn C
U
DA/OpenCL GPU wait code-pat
h
s
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Add wallcycle ti
m
e
r for t
h
e
PME GPU F redu
c
tion
commit
|
commitdiff
|
tree
2017-11-07
Szilárd Páll
Split off nbnxn GPU
timi
n
g and staging reduc
t
ion
commit
|
commitdiff
|
tree
2017-11-07
Szil
á
rd Páll
Dedupli
c
ate
C
UDA and OpenCL
t
im
e
r str
u
c
t
commit
|
commitdiff
|
tree
2017-10-31
Szilá
r
d Páll
Fix n
s
t
list increas
e
war
n
ing
p
rint
commit
|
commitdiff
|
tree
2017-10-31
Szilárd Páll
Ch
e
ck CUDA a
v
a
ilable/compil
e
d code
compa
t
i
b
ility
commit
|
commitdiff
|
tree
2017-10-31
S
zilárd Páll
F
ix nstlist increase warning pri
n
t
commit
|
commitdiff
|
tree
2017-10-26
S
z
ilárd P
á
l
l
Reor
g
an
i
ze PME GPU
l
aunch
commit
|
commitdiff
|
tree
2017-10-23
Szilárd
Páll
Eliminate
some OC
L
/
C
UDA code code dup
l
i
catio
n
commit
|
commitdiff
|
tree
2017-10-19
S
zi
l
á
rd Páll
D
isable O
p
enMP with
clang
3
.
4 post-sub
m
it c
o
nfig
commit
|
commitdiff
|
tree
2017-10-19
S
zilárd Páll
Remove unised O
p
enCL
debug
g
ing helper
s
commit
|
commitdiff
|
tree
2017-10-12
S
z
i
lárd Pá
l
l
Remo
v
e
t
h
e
s
i
z
e
_
t from
t
he PME gather CUD
A
kenels
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
Ref
a
c
t
o
r
scaled
b
ox handling for
P
ME/E
w
ald
commit
|
commitdiff
|
tree
2017-10-05
Szilá
r
d Páll
F
ix pair list array assertio
n
commit
|
commitdiff
|
tree
2017-10-05
Szilárd Páll
Avoid -W
m
i
s
sing-p
r
o
t
o
t
ypes warning
s
in clang CUDA builds
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
M
ove Ewa
l
d
s
plitting-rel
a
ted code to ewald-u
t
ils
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
E
nab
l
e compiling CUDA devic
e
code
with clang
commit
|
commitdiff
|
tree
2017-09-28
Szilárd Pá
l
l
Correct mis
p
laced CUDA tim
i
ng eve
n
t rec
o
r
d
commit
|
commitdiff
|
tree
2017-09-26
Szilárd Páll
Re
n
ame GP
U
lau
n
c
h
/
w
a
i
t
cycl
e
counte
r
s
commit
|
commitdiff
|
tree
2017-09-18
S
z
ilá
r
d
Páll
Minor refacto
r
ing of CUDA non-
b
onded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szilárd P
á
ll
CUDA 9/Volta suppor
t
for the p
r
uning ker
n
el
commit
|
commitdiff
|
tree
2017-09-12
Szilárd Pá
l
l
Merge
branch 'rele
a
se-2016'
commit
|
commitdiff
|
tree
2017-09-11
Szilárd Páll
NVIDIA Volta
p
e
rforma
n
ce t
w
eaks
commit
|
commitdiff
|
tree
2017-08-29
Szilárd Pá
l
l
F
ix typo
and
t
weak
env var docs
commit
|
commitdiff
|
tree
2017-08-29
Szil
á
rd P
á
ll
Avoid division
b
y z
e
r
o
i
s
p
runing p
a
rt
c
a
l
cul
a
tio
n
commit
|
commitdiff
|
tree
2017-08-21
Szilá
r
d
Páll
Add O
p
enCL pruning kernels and launch/timing log
i
c
commit
|
commitdiff
|
tree
2017-08-18
Szilárd Páll
Improve awkward handling of GM
X
_CUD
A
_TAR
G
ET* help
commit
|
commitdiff
|
tree
2017-08-18
Szilárd
P
áll
A
dd CUDA pr
u
ning kernels
a
n
d
la
u
nch/timin
g
logi
c
commit
|
commitdiff
|
tree
2017-07-27
Szi
l
árd Pál
l
I
n
form users about the end of run DLB stat
e
commit
|
commitdiff
|
tree
2017-06-26
S
z
ilárd Páll
Ad
d
ARM_NEON_ASIMD post-
s
ub
m
it test
commit
|
commitdiff
|
tree
2017-06-21
Szilárd
Páll
Re-enabl
e
lost DD warning + mi
n
or c
o
de moderni
z
ation
commit
|
commitdiff
|
tree
2017-06-20
Szil
á
rd
P
áll
Re-enable ac
c
ident
a
lly
lo
s
t DD war
n
ing
commit
|
commitdiff
|
tree
2017-06-20
Szilárd
P
á
ll
Refa
c
toring + clarifi
c
ation of DLB
state
handling
commit
|
commitdiff
|
tree
2017-06-15
S
zilárd Páll
Allow disabling
t
he explicit use of CUDA
textures
commit
|
commitdiff
|
tree
2017-06-07
Szilárd
P
áll
Suppress sm_2x deprecation warning wit
h
CUDA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd Páll
A
d
d
C
UDA 8
.
0 + SIMD p
r
e-su
b
mit test
commit
|
commitdiff
|
tree
2017-06-02
Sz
i
lárd Páll
A
dd ARM_NEON post-subm
i
t test
commit
|
commitdiff
|
tree
2017-05-29
Szilárd Pá
l
l
Quotes are co
o
l,
typo-free ones
a
r
e even
"cool
e
r"
commit
|
commitdiff
|
tree
2017-05-23
Szil
á
rd P
á
ll
Add basic doxygen for the V
e
rlet nonbonded module
commit
|
commitdiff
|
tree
2017-03-29
S
zilárd
P
áll
Refactor CUDA kernel use of tables
commit
|
commitdiff
|
tree
2017-03-29
Szilárd
Páll
Add CUDA
ut
i
l function for constant loads
commit
|
commitdiff
|
tree
2017-03-25
Szilárd Páll
Condit
i
on
a
l tweak i
n
t
he no
n
bonded GPU ke
r
nels
commit
|
commitdiff
|
tree
2017-03-17
S
z
i
l
árd
Páll
All
o
w bypassing OpenCL devic
e
c
ompa
t
ibility chec
k
commit
|
commitdiff
|
tree
2017-03-16
Szilárd Páll
Pr
i
n
t co
d
e of unknown
Ope
n
CL error
commit
|
commitdiff
|
tree
2017-03-09
S
z
il
á
r
d
P
á
l
l
Fix
m
dr
u
n
hang
i
ng upon exit with sep PME rank
s
commit
|
commitdiff
|
tree
2017-01-24
Szilárd Páll
Remove
u
nused argument in GPU
k
ernels
commit
|
commitdiff
|
tree
2016-12-09
Szi
l
árd Pá
l
l
Turn off hwloc supp
o
r
t
when static lib found
commit
|
commitdiff
|
tree
2016-11-17
Szilárd Páll
Correct kernel laun
c
h
boun
d
s for C
U
DA sm_60
commit
|
commitdiff
|
tree
2016-11-01
S
zilár
d
Páll
Merg
e
"Merge
branch release-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szilárd P
á
ll
GPU-
r
elat
e
d ad
d
itions
t
o th
e
i
nsta
l
l/user guide
commit
|
commitdiff
|
tree
2016-10-27
Szi
l
árd Páll
M
a
ke -cl-fast-r
e
l
axe
d
-math default
commit
|
commitdiff
|
tree
2016-10-26
Szilárd
P
áll
Add GMX_D
I
S
A
BLE_GPU_TIMING env va
r
commit
|
commitdiff
|
tree
2016-10-09
Szilárd
P
á
ll
Correct kernel l
a
unch boun
d
s for CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
S
z
ilárd Páll
Make A
S
AN/TSAN
/
MSAN
b
u
i
ld types
easier to
d
iscover
commit
|
commitdiff
|
tree
2016-07-08
Szilár
d
Páll
Add PDF me
t
adata to the manual
commit
|
commitdiff
|
tree
2016-07-08
Sz
i
lár
d
Páll
Us
e
r guide clarificat
i
ons
commit
|
commitdiff
|
tree
2016-07-07
Szilárd Páll
Add
u
ser guide info on CUDA ap
p
lication
c
l
ocks
commit
|
commitdiff
|
tree
2016-07-05
Szilá
r
d
Pá
l
l
D
ocument
GMX_GPU_APP
L
ICATION_CLOCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd
Páll
Di
s
able
N
VIDIA JI
T
c
a
che wit
h
OpenC
L
commit
|
commitdiff
|
tree
2016-06-14
Szilárd Páll
Fi
x
CUDA build with multiple
c
o
mpilatio
n
units
commit
|
commitdiff
|
tree
2016-06-05
Szilárd Pál
l
Add su
p
port
for CUDA
CC 6
.
0/6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Add env
.
var
.
to enable OpenCL c
a
ching
commit
|
commitdiff
|
tree
2016-06-02
S
z
ilá
r
d Páll
Fix O
p
en
C
L binary
cach
e
file n
a
me generation
commit
|
commitdiff
|
tree
2016-05-05
Szilárd Páll
Remove CUDA host co
m
piler
c
onsi
s
tency che
c
ks
commit
|
commitdiff
|
tree
2016-04-28
S
z
ilá
r
d Páll
W
orkaro
u
nd
for gcc
f
alse posit
i
v
e warning
commit
|
commitdiff
|
tree
2016-04-27
Szilár
d
P
á
l
l
Fix multip
l
e MPI ra
n
ks
per node with Op
e
nCL
commit
|
commitdiff
|
tree
2016-04-26
Szilárd Pá
l
l
Fix OpenCL ass
e
rtion
commit
|
commitdiff
|
tree
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