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Remove PImpl scaffolding from CUDA version of Leap-Frog
2019-08-06
Artem Zhmurov
Remove P
I
mp
l
sca
f
folding fr
o
m CUDA v
e
rsion of
L
eap
.
.
.
commit
|
commitdiff
|
tree
2019-08-06
B
e
rk Hess
Add For
c
eWi
t
hShiftForces
c
l
ass
commit
|
commitdiff
|
tree
2019-08-06
Berk
Hess
Fi
x
l
a
tex formula in re
f
e
r
ence manual
commit
|
commitdiff
|
tree
2019-08-06
M
.
E
ric Irrg
a
n
g
Resolve a
c
ompiler warning
for
t
h
e
g
mxap
i
Pyt
h
on package
.
commit
|
commitdiff
|
tree
2019-08-05
Mark Abraham
A
dd q
u
ote
commit
|
commitdiff
|
tree
2019-08-05
B
e
rk
H
ess
Make box
const in do_
f
orce()
commit
|
commitdiff
|
tree
2019-08-05
P
aul
B
a
u
er
A
dd r
e
p
l
acements for pbc enu
m
er
a
tions
commit
|
commitdiff
|
tree
2019-08-05
Pau
l
Bauer
A
d
d free function
t
o
c
onvert matrix
t
ype
commit
|
commitdiff
|
tree
2019-07-25
Kev
i
n Boyd
Add transpo
s
e operatio
n
t
o
Matrix3x3
commit
|
commitdiff
|
tree
2019-07-24
Chri
s
ti
a
n Blau
Fix HT
M
L
source
documenation error caus
e
d by
G
au
s
s
T
ransform3D
commit
|
commitdiff
|
tree
2019-07-24
M
.
Eric Irrgang
Begin new sample_rest
r
aint development
.
commit
|
commitdiff
|
tree
2019-07-18
M
.
Er
i
c Irrgang
Impr
o
ve so
m
e docu
m
entati
o
n fo
r
matting an
d
spelling
.
commit
|
commitdiff
|
tree
2019-07-18
M
.
Eric Irrgang
Remove ex
t
r
a
neous
f
ile
.
commit
|
commitdiff
|
tree
2019-07-18
Pa
u
l Bauer
Extend M
D
Log
g
er leve
l
s
commit
|
commitdiff
|
tree
2019-07-17
Paul Bauer
Move methods o
u
t from trjco
n
v
commit
|
commitdiff
|
tree
2019-07-03
Mark A
b
raham
R
e
or
d
er options
commit
|
commitdiff
|
tree
2019-06-28
Christian Blau
Add class to
l
ook up de
n
sit
y
fitting amplitudes
commit
|
commitdiff
|
tree
2019-06-20
Christian
Blau
Add coordina
t
e
s
caling c
l
ass and extend TranslateAnd
S
cale
commit
|
commitdiff
|
tree
2019-06-20
Christia
n
Blau
Allow non
-
uniform Gaussians
commit
|
commitdiff
|
tree
2019-06-18
Paul Bauer
Extend ISe
r
ializer funct
i
o
na
l
ity
commit
|
commitdiff
|
tree
2019-05-08
Mark Abraham
P
r
o
vid
e
hook for forks
o
f GROMAC
S
to
d
escribe
t
hemselves
commit
|
commitdiff
|
tree
2019-04-22
Christian Blau
Three d
i
men
s
ional gauss
t
ransform
commit
|
commitdiff
|
tree
2019-04-22
Ch
r
istian Bl
a
u
O
n
e di
m
en
s
i
onal Gaussian function
on lattice
.
commit
|
commitdiff
|
tree
2019-03-25
M
a
r
k Abrah
a
m
Su
p
port
A
rrayRef of En
u
mer
a
ti
o
nArra
y
commit
|
commitdiff
|
tree
2019-03-25
M
.
Er
i
c Irr
g
ang
Remove uses of
std::iterator
m
ix-in
.
commit
|
commitdiff
|
tree
2019-03-22
Paul Bauer
Add s
i
mple tests for symb
o
l t
a
ble
commit
|
commitdiff
|
tree
2019-03-20
Paul Bau
e
r
Add simple t
e
st to preprocess bon
d
atom
type
commit
|
commitdiff
|
tree
2019-03-20
Paul Bauer
Add
t
est for s
t
ring compar
i
son
commit
|
commitdiff
|
tree
2019-03-19
Mark Abraham
Ad
d
support for s
e
ri
a
l
iz
i
ng 32-bit integers
commit
|
commitdiff
|
tree
2019-03-19
Chri
s
tian Blau
d
ensityfit
t
ing
-
density file format (mr
c
)
hea
d
er
.
commit
|
commitdiff
|
tree
2019-03-19
Paul
Bau
e
r
Fix case insensitive string comparison
commit
|
commitdiff
|
tree
2019-03-19
Mark Abra
h
am
F
i
x
clan
g
warn
i
ng
commit
|
commitdiff
|
tree
2019-03-19
Mark Abraham
Update ElectricFiel
d
module
commit
|
commitdiff
|
tree
2019-03-13
P
a
ul Bauer
Add tests for p
r
e
proce
s
s atom ty
p
es
commit
|
commitdiff
|
tree
2019-03-13
Pa
u
l Bau
e
r
Refactor t_pa
r
am t
o
Intera
c
tionType
commit
|
commitdiff
|
tree
2019-03-08
Paul Bauer
Refa
c
t
or
p
repr
o
cessing atom ty
p
es
.
commit
|
commitdiff
|
tree
2019-03-07
Mark Abrah
a
m
New
t
ests
f
o
r
p
d
b
2g
m
x and editconf
commit
|
commitdiff
|
tree
2019-03-06
Pau
l
Bauer
Add error when manu
a
l cannot be
b
uilt
commit
|
commitdiff
|
tree
2019-02-27
Mark Abrah
a
m
Keep n
i
che
CMak
e
variabl
e
s
a
s advanced
commit
|
commitdiff
|
tree
2019-02-25
Mark Abraham
Mov
e
c
o
de
o
u
t
o
f
sim_u
t
il
.
cpp
commit
|
commitdiff
|
tree
2019-02-15
Paul Ba
u
er
Fix memory leaks in editco
n
f
commit
|
commitdiff
|
tree
2019-02-14
Mark Abra
h
am
Fix use of selections
re
f
erring to index groups
commit
|
commitdiff
|
tree
2019-02-14
Mark Abraham
Revert changes
t
o
i
m
p
lementatio
n
of insert
-
molecules
.
.
.
commit
|
commitdiff
|
tree
2019-02-13
Paul Bau
e
r
R
e
fact
o
r rtp renam
i
n
g
commit
|
commitdiff
|
tree
2019-02-13
Mark Abraham
M
a
k
e
EnergyOutput w
r
apper
class
commit
|
commitdiff
|
tree
2019-02-08
Mark Abraham
Remove c
o
py_energy from energy-w
r
iting steps
commit
|
commitdiff
|
tree
2019-02-07
Roland
S
chul
z
Add ssize and remove
s
tati
c
_cas
t
s
commit
|
commitdiff
|
tree
2019-01-25
Mark Abraham
Unify regex implementat
i
on
commit
|
commitdiff
|
tree
2019-01-24
Christian Blau
R
emove extra se
m
icol
o
ns causi
n
g clang warnings
.
commit
|
commitdiff
|
tree
2019-01-18
Kevin B
o
y
d
Add t
e
sts for gmx mi
n
dist
commit
|
commitdiff
|
tree
2018-12-20
David van der
S
poel
Removed
t_
t
opology from gmx msd
commit
|
commitdiff
|
tree
2018-12-12
Szilárd Páll
Im
p
rov
e
DLB report/not
e
commit
|
commitdiff
|
tree
2018-12-10
Paul Bauer
Use more const references in to
p
ology
c
ode
commit
|
commitdiff
|
tree
2018-12-06
borist
i
m
U
p
date
s
to do_dssp
commit
|
commitdiff
|
tree
2018-10-03
M
a
r
k Abraham
Basic modernization
o
f md5 handling
commit
|
commitdiff
|
tree
2018-08-30
Christian Blau
Convert ess
e
nt
i
al dyn
a
m
ics C-str
u
cts to C+
+
p
t
1
.
commit
|
commitdiff
|
tree
2018-08-20
Berk
Hes
s
Make
gmx_
g
a2l
a
_t a proper cla
s
s
commit
|
commitdiff
|
tree
2018-08-17
Berk Hess
Make
p
ull pbc atom use
L
ocalAtomSet
commit
|
commitdiff
|
tree
2018-08-14
Rolan
d
Schulz
Remo
v
e
BasicVector
.
as_vec
commit
|
commitdiff
|
tree
2018-08-10
Ke
v
i
n Boyd
Added physi
c
al
v
alidation docum
e
n
t to the dev manual
.
commit
|
commitdiff
|
tree
2018-08-09
C
hr
i
stian Blau
Remove Debug Helpers from E
s
sential Dyna
m
ics code
.
commit
|
commitdiff
|
tree
2018-08-08
Christian Blau
Esse
n
tial dynamics
f
unctions use con
s
t-ref for input
.
.
.
commit
|
commitdiff
|
tree
2018-08-08
Christian Blau
S
p
lit
essential dyna
m
i
cs ei
g
envector readin
g
.
commit
|
commitdiff
|
tree
2018-08-08
Chr
i
st
i
an Blau
Make ess
e
ntial dynamics a C++ typ
e
.
commit
|
commitdiff
|
tree