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Revert "GROMACS 2020 release"
2020-01-01
Pau
l
Bauer
R
e
vert "GROM
A
CS
2
020 rel
e
as
e
"
commit
|
commitdiff
|
tree
2020-01-01
Pau
l
Bauer
GROMAC
S
2020 release
commit
|
commitdiff
|
tree
2019-12-30
Paul Bauer
Fix
b
uild error with
w
rong n
a
me
f
rom cached
cmake
f
i
l
e
commit
|
commitdiff
|
tree
2019-12-28
P
au
l
Bauer
Ch
a
nge releng to give information about
G
i
t
l
ab
commit
|
commitdiff
|
tree
2019-12-28
Paul Bauer
Extend i
n
f
ormati
o
n fo
r
GPU
update
commit
|
commitdiff
|
tree
2019-12-28
Paul Bauer
Exclude bu
i
l
d-system files fro
m
CPack
commit
|
commitdiff
|
tree
2019-12-28
Paul B
a
uer
Remove me
m
bed
f
rom features
commit
|
commitdiff
|
tree
2019-12-28
Paul B
a
u
e
r
De
p
recate suppo
r
t
for A
r
mv7
commit
|
commitdiff
|
tree
2019-12-27
P
au
l
Bauer
A
d
d copyright check and im
p
rove cache
u
sa
g
e
commit
|
commitdiff
|
tree
2019-12-27
P
aul B
a
uer
M
e
rge
o
rigin/
r
e
le
a
se-2019
int
o
rele
a
se-2020
commit
|
commitdiff
|
tree
2019-12-23
Pau
l
Baue
r
Add
f
iles fo
r
Gitlab CI
commit
|
commitdiff
|
tree
2019-12-23
Paul Bauer
Prepare for G
R
OMACS
2
019
.
6
commit
|
commitdiff
|
tree
2019-12-23
Paul
Bau
e
r
GROMACS version 2
0
1
9
.
5
commit
|
commitdiff
|
tree
2019-12-23
Paul B
a
uer
Revert "Fix that
t
est
s
intended for m
u
ltiple ranks
.
.
.
commit
|
commitdiff
|
tree
2019-12-20
Paul Bau
e
r
Fix
wrong
header in release n
o
tes
commit
|
commitdiff
|
tree
2019-12-20
P
a
ul
B
auer
GROMACS 2
0
20 rele
a
se
c
andidate
commit
|
commitdiff
|
tree
2019-12-19
Paul Bauer
Fix re
g
res
s
ion
t
ests failing wit
h
ct
e
st
commit
|
commitdiff
|
tree
2019-12-18
Pa
u
l B
a
uer
Add ability to
s
et OMP and tMPI
t
h
read
f
or ctes
t
commit
|
commitdiff
|
tree
2019-12-18
P
a
ul
Bauer
Ignore
b
uild host for
C
I
builds
commit
|
commitdiff
|
tree
2019-12-17
Pa
u
l Bauer
Test p
a
rallel mpi only with openmp
commit
|
commitdiff
|
tree
2019-12-17
Paul B
a
ue
r
Set
c
orrec
t
d
ependency for doc build on gmxapi
commit
|
commitdiff
|
tree
2019-12-17
Pa
u
l
Ba
u
er
Fix compiler warning
about extra ;
commit
|
commitdiff
|
tree
2019-12-17
Pau
l
Bauer
Fix fo
r
matting
err
o
r
commit
|
commitdiff
|
tree
2019-12-16
Pa
u
l
B
a
uer
Fix t
o
rsion
angl
e
calculation
commit
|
commitdiff
|
tree
2019-12-13
P
aul B
a
uer
C
heck for
u
sin
g
c
o
r
rec
t
hwloc hea
d
ers and runti
m
e
commit
|
commitdiff
|
tree
2019-12-03
Paul
Bauer
Thi
r
d beta re
l
ease of GROMAC
S
2020
commit
|
commitdiff
|
tree
2019-12-03
Paul Bauer
R
e
v
ert "Enable GPU upd
a
te with D
D
when
G
PU
com
m
fe
a
tures
.
.
.
commit
|
commitdiff
|
tree
2019-12-03
P
a
ul Bau
e
r
F
i
x
ni
g
htly build by c
o
r
r
e
c
tly
d
efi
n
ing several
commit
|
commitdiff
|
tree
2019-12-02
Paul Bauer
Set upda
t
e to run on GP
U
by default if possible
commit
|
commitdiff
|
tree
2019-12-01
Paul Baue
r
Use DOI for citi
n
g in r
e
f
e
re
n
ce m
a
nual section
commit
|
commitdiff
|
tree
2019-11-29
Paul Bauer
Fix unalign
e
d acc
e
s
s
wi
t
h AVX512
commit
|
commitdiff
|
tree
2019-11-29
Pa
u
l Bauer
Fix bui
l
d e
r
ror witho
u
t thread or regul
a
r mpi
commit
|
commitdiff
|
tree
2019-11-28
P
au
l
B
a
uer
Check for using corre
c
t
hwloc header
s
a
n
d run
t
im
e
commit
|
commitdiff
|
tree
2019-11-28
Paul Bauer
Fix postsubmit
commit
|
commitdiff
|
tree
2019-11-26
Paul Bauer
Fix unused
va
r
iable warning in ewa
l
d
c
ode
commit
|
commitdiff
|
tree
2019-11-20
Paul Bauer
Merge 'origin/release-
2
019' i
n
to
r
el
e
ase-2020
commit
|
commitdiff
|
tree
2019-11-14
P
a
u
l Ba
u
er
Fix formatti
n
g error
commit
|
commitdiff
|
tree
2019-11-13
Paul Baue
r
Ad
d
build
t
o run cla
n
g-format upda
t
e
o
n
Jenkins
commit
|
commitdiff
|
tree
2019-11-12
Paul Bauer
Indi
c
a
t
e which
v
ersions are no lon
g
er suppo
r
te
d
commit
|
commitdiff
|
tree
2019-11-07
Paul Bauer
A
pply clang-format t
o
source
tree
commit
|
commitdiff
|
tree
2019-11-04
Paul Bau
e
r
Add build for clang-format
commit
|
commitdiff
|
tree
2019-11-04
Paul Bauer
Split u
p
source code
formatting scripts
commit
|
commitdiff
|
tree
2019-11-01
Paul Bauer
Sec
o
nd beta relea
s
e of GROMACS
2
020
commit
|
commitdiff
|
tree
2019-11-01
Paul
Bauer
Prepa
r
e f
o
r 2020 be
t
a 2
commit
|
commitdiff
|
tree
2019-11-01
Paul
B
a
uer
Add validation of tarball buil
d
s
commit
|
commitdiff
|
tree
2019-10-31
P
a
ul Bauer
Use
t
y
p
e of explicit size in
inmemoryseriali
z
e
r
commit
|
commitdiff
|
tree
2019-10-29
Paul Ba
u
er
Mer
g
e "Merge bra
n
ch
'
r
e
lease-2019' into mas
t
er"
commit
|
commitdiff
|
tree
2019-10-29
Pa
u
l B
a
uer
Merge branch 're
l
ease-2019
'
i
n
to master
commit
|
commitdiff
|
tree
2019-10-18
P
a
ul
Bauer
Use clang-tid
y
-8
commit
|
commitdiff
|
tree
2019-10-15
Pau
l
Bauer
Fix bu
g
i
n
preprocessing
commit
|
commitdiff
|
tree
2019-10-11
Paul
B
a
uer
Add helpe
r
to
reuse gene
r
ated TPR
f
i
les in testing
commit
|
commitdiff
|
tree
2019-10-10
P
aul B
a
uer
Basic populatio
n
of simul
a
tion
w
orkload
commit
|
commitdiff
|
tree
2019-10-02
Paul Bauer
Fix fai
l
ures in clang-8 nightly bu
i
l
d
commit
|
commitdiff
|
tree
2019-10-02
Paul Bauer
Prepare for 2019
.
5
commit
|
commitdiff
|
tree
2019-10-02
Paul Bauer
GROM
A
CS version 2019
.
4
commit
|
commitdiff
|
tree
2019-10-01
Paul
Bauer
F
i
x chain ID handling in
mak
e
_ndx
commit
|
commitdiff
|
tree
2019-09-26
Paul Bauer
Revert "Remove update flag agai
n
"
commit
|
commitdiff
|
tree
2019-09-25
Paul B
a
u
e
r
G
R
OMA
C
S
2020 first
be
t
a re
l
ea
s
e
commit
|
commitdiff
|
tree
2019-09-24
Paul Bauer
Add test for n
o
appen
d
commit
|
commitdiff
|
tree
2019-09-24
Paul Bauer
Merg
e
bra
n
ch release-20
1
9 i
n
to master
commit
|
commitdiff
|
tree
2019-09-24
Paul Bauer
Read in TPR c
h
ar bu
f
fer as vector
commit
|
commitdiff
|
tree
2019-09-24
Paul Baue
r
Add release note
s
for
m
odula
r
simulator
commit
|
commitdiff
|
tree
2019-09-23
Paul B
a
uer
Fi
x
issues
w
hen PME rank
r
equest beco
m
es
neg
a
tive
commit
|
commitdiff
|
tree
2019-09-23
Paul
B
auer
Chan
g
e MP
I
s
e
tup to communicate TPR as
b
u
ffer
commit
|
commitdiff
|
tree
2019-09-22
Paul B
a
uer
Remove update flag again
commit
|
commitdiff
|
tree
2019-09-19
Pa
u
l Ba
u
er
Add basic interf
a
ce t
o
run
u
pdate
on
G
P
U
commit
|
commitdiff
|
tree
2019-09-19
Pa
u
l
Bauer
Split
u
p
do_tpx_body
f
un
c
tions
commit
|
commitdiff
|
tree
2019-09-18
Paul
Baue
r
R
e
a
d TPR file body in buffer
commit
|
commitdiff
|
tree
2019-09-18
Paul Bauer
F
i
x
MSVC war
n
ing
commit
|
commitdiff
|
tree
2019-09-17
Paul Bauer
Add dep
r
ecation note for 32 bit
commit
|
commitdiff
|
tree
2019-09-16
Paul Bauer
For
m
atting fixes fo
r
refer
e
nce
m
anual
commit
|
commitdiff
|
tree
2019-09-13
Paul Bauer
Fix nightly failures
commit
|
commitdiff
|
tree
2019-09-13
Paul Bauer
Ad
d
lis
t
of unsupport
e
d functions in 2020
commit
|
commitdiff
|
tree
2019-09-11
Paul Bau
e
r
Remove -sub option from trjcon
v
commit
|
commitdiff
|
tree
2019-09-11
Paul Bauer
Add mis
s
ing gmxapi
requirements
commit
|
commitdiff
|
tree
2019-09-11
Pau
l
Bauer
Basic
to
o
lchain to
f
a
c
ilitate GMXAPI build
commit
|
commitdiff
|
tree
2019-09-11
P
a
ul Bauer
Disable fa
l
se positive warning in ICC
a
nd
M
SVC
commit
|
commitdiff
|
tree
2019-09-10
Pau
l
B
a
u
er
Add ind
i
c
ation on how to
enable Im
a
ge
M
agick conv
e
r
t
commit
|
commitdiff
|
tree
2019-09-10
P
a
u
l
Bauer
Fix
n
ightly build
commit
|
commitdiff
|
tree
2019-09-10
Paul
Baue
r
Add method to
e
xtract clu
s
ters from
trajectory
commit
|
commitdiff
|
tree
2019-09-09
P
a
ul Bauer
A
dd gmx convert-trj
commit
|
commitdiff
|
tree
2019-08-28
Paul Bauer
Fix return value
commit
|
commitdiff
|
tree
2019-08-28
Paul
B
auer
Ha
v
e se
l
ections available for mdrun o
n
ly
commit
|
commitdiff
|
tree
2019-08-28
P
a
ul Ba
u
e
r
C
han
g
e
tolerance for n
o
r
mal
m
o
d
e tests
commit
|
commitdiff
|
tree
2019-08-26
P
a
ul Ba
u
er
Remove section checki
n
g api level
commit
|
commitdiff
|
tree
2019-08-26
Pa
u
l Bauer
Remove
i
nstalled headers
f
rom CMake
commit
|
commitdiff
|
tree
2019-08-23
Paul Bauer
Removes checker for installed f
i
les
commit
|
commitdiff
|
tree
2019-08-09
Pa
u
l Baue
r
Add conversion from legacy to modern
matrix
type
commit
|
commitdiff
|
tree
2019-08-05
Paul Bauer
Add replacements for
p
bc enumerations
commit
|
commitdiff
|
tree
2019-08-05
Pau
l
Bauer
A
d
d
free function t
o
convert mat
r
ix ty
p
e
commit
|
commitdiff
|
tree
2019-08-01
Paul Bauer
Merge
r
e
le
a
s
e
-
2
019
into master
commit
|
commitdiff
|
tree
2019-07-30
P
a
ul Bauer
Ad
d
wr
a
pper for outputadapter methods
commit
|
commitdiff
|
tree
2019-07-24
P
a
ul B
a
ue
r
Fix doxy
g
en
i
n
coordiant
e
i
o
fil
e
s
commit
|
commitdiff
|
tree
2019-07-24
Pa
u
l Bauer
Add outputadapters (3/3)
commit
|
commitdiff
|
tree
2019-07-18
Paul Bauer
Extend MDLogge
r
levels
commit
|
commitdiff
|
tree
2019-07-17
Paul Bauer
Move methods out fr
o
m trjconv
commit
|
commitdiff
|
tree
2019-07-09
Paul Bauer
Fix
link to acpype
r
epos
i
tory
commit
|
commitdiff
|
tree
2019-07-09
Paul Bauer
Fix po
s
tsu
b
m
i
t
commit
|
commitdiff
|
tree
2019-07-08
Paul Bauer
Fix issues found by c
l
a
ng-tid
y
7
commit
|
commitdiff
|
tree
2019-07-02
P
a
ul
Bauer
F
ix bu
g
in g
m
x xpm2ps
commit
|
commitdiff
|
tree
next