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Fix SHAKE dH/dlambda contributions
2019-05-23
B
e
rk Hess
F
i
x
SHAKE dH/dlambda contribu
t
ions
commit
|
commitdiff
|
tree
2019-02-20
Ber
k
Hes
s
Fix ma
s
s Delta H doubl
e
co
u
ntin
g
commit
|
commitdiff
|
tree
2019-02-20
Berk Hess
Fix incorrect LJ
repulsi
o
n fo
r
ce sw
i
tching on GPUs
commit
|
commitdiff
|
tree
2019-01-30
Mark Abrah
a
m
Fix
re
l
ease notes issue links
commit
|
commitdiff
|
tree
2019-01-22
Christoph Jung
h
a
n
s
gmxManage
L
m
f
i
t
.
cmake:
e
nforce u
s
age o
f
7
.
0
commit
|
commitdiff
|
tree
2019-01-21
Szilárd Páll
Add CUDA CC
7
.
5 (T
u
ring)
s
u
p
port w
i
th n
v
cc
commit
|
commitdiff
|
tree
2019-01-16
M
a
rk A
b
raham
Migrate test c
o
nfiguration off bs_mac
commit
|
commitdiff
|
tree
2018-11-20
Ma
r
k Abraham
Pa
r
tial revert of
"
Fix
ineffici
e
nt shel
l
minimizatio
n
"
commit
|
commitdiff
|
tree
2018-11-15
Mark Abraham
Fix checkpoint
r
e
start
of tp
r
w
ith
i
nfinite step count
commit
|
commitdiff
|
tree
2018-11-11
D
a
vid van
d
e
r
Spoel
Fi
x
e
ntropy calculat
i
on in
g
mx a
n
aei
g
commit
|
commitdiff
|
tree
2018-11-09
Dav
i
d van d
e
r
S
po
e
l
Change get_at
o
m
_index to allow m
u
ltiple molec
u
les
.
commit
|
commitdiff
|
tree
2018-11-08
Paul B
a
uer
Issue fat
a
l error if checkpoint does not suit the
.
tp
r
commit
|
commitdiff
|
tree
2018-10-31
Berk Hess
Work ar
o
u
n
d exp
a
nded e
n
semble issues
commit
|
commitdiff
|
tree
2018-10-26
Berk Hess
Add mis
s
i
ng
m
ass term
t
o
delta
H
commit
|
commitdiff
|
tree
2018-10-11
Paul B
a
uer
Add
s
hort
s
ecur
i
ty notice
commit
|
commitdiff
|
tree
2018-09-04
Mark Abraham
Clarify
i
nitial DD cell ch
o
ice wi
t
h pressure
c
oupl
i
ng
commit
|
commitdiff
|
tree
2018-08-24
Mark
A
b
r
aham
Fi
x
bui
l
d withou
t
TNG
commit
|
commitdiff
|
tree
2018-08-22
P
a
ul Baue
r
Fix trjconv
w
hen r
u
nning wit
h
o
u
t a
structure file
commit
|
commitdiff
|
tree
2018-08-20
Berk Hess
Refactor calc_verlet_buf
f
er_
s
ize()
commit
|
commitdiff
|
tree
2018-08-20
Szi
l
árd
P
áll
Disable single compila
t
ion unit with
C
U
DA 9
.
0
commit
|
commitdiff
|
tree
2018-08-20
Berk
H
ess
F
ix Verl
e
t buffer
e
stimat
e
with
B
D
commit
|
commitdiff
|
tree
2018-08-20
Berk Hess
Fix assertion failure in CG
commit
|
commitdiff
|
tree
2018-08-20
Berk Hess
Really fix CG with multiple domain
s
commit
|
commitdiff
|
tree
2018-08-14
Mark A
b
raham
Fix e
n
forced rotation energy output
commit
|
commitdiff
|
tree
2018-07-30
Mark Abraham
Fix CG with
m
ultiple domains
commit
|
commitdiff
|
tree
2018-07-30
Paul Bauer
Fix bfactor
o
ut
p
ut
commit
|
commitdiff
|
tree
2018-07-29
Szilárd Pá
l
l
Corrections to t
h
e us
e
r
g
u
ide m
d
r
un perf section
commit
|
commitdiff
|
tree
2018-07-18
M
ark Abra
h
am
Fix pre-submit matrix
commit
|
commitdiff
|
tree
2018-06-14
Mark Abraham
Upd
a
t
e
d to pre
p
are for 201
8
.
3 release
commit
|
commitdiff
|
tree
2018-06-14
M
ark Abr
a
ham
Version 2018
.
2
commit
|
commitdiff
|
tree
2018-06-13
Ma
r
k Abr
a
ham
Fix
p
remature reporting of action when GPUs are not
.
.
.
commit
|
commitdiff
|
tree
2018-06-13
Mark Abraham
Update top-level READ
M
E
commit
|
commitdiff
|
tree
2018-06-13
M
a
rk Abra
h
am
Fixed do
c
u
m
e
n
tati
o
n
t
y
p
o
commit
|
commitdiff
|
tree
2018-06-12
Berk
H
ess
Add AWH continuat
i
o
n c
o
n
si
s
te
n
cy
c
heckin
g
commit
|
commitdiff
|
tree
2018-06-12
M
a
rk Abrah
a
m
M
or
e
fixe
s
to sui
t
gcc 8 for doub
l
e build
commit
|
commitdiff
|
tree
2018-06-12
Szilárd Pál
l
Also
i
ssue OMP_NUM_THREADS reading note to the
l
og
commit
|
commitdiff
|
tree
2018-06-12
V
i
veca Linda
h
l
C
h
anged histo
g
ram che
c
k inte
r
val for multid
i
mensio
n
al
.
.
.
commit
|
commitdiff
|
tree
2018-06-12
Berk Hes
s
Add
fatal err
o
r
f
or i
n
consistent graph
commit
|
commitdiff
|
tree
2018-06-12
B
erk Hess
Avoid COM
r
emoval
m
ovi
n
g frozen atoms
commit
|
commitdiff
|
tree
2018-06-12
B
e
rk
Hess
Remove
c
ons
t
raint v correction
f
o
r f
r
ozen
a
toms
commit
|
commitdiff
|
tree
2018-06-06
Berk Hess
Fix MPI i
n
consistency i
n
EM a
f
ter con
s
tra
i
nt failure
commit
|
commitdiff
|
tree
2018-05-22
Aleks
e
i Iupinov
Re
m
ove unused results of cudaStream
Q
uery
(
)
commit
|
commitdiff
|
tree
2018-04-10
Alek
s
ei Iupin
o
v
Prevent OpenC
L
t
i
m
i
ng memory leak
commit
|
commitdiff
|
tree
2018-04-03
Mark Abraha
m
R
emove l
e
f
t
over mention
o
f twin-range sche
m
e
commit
|
commitdiff
|
tree
2018-03-27
Mark Abraham
Clarified md
p
options rela
t
ing
to bonds
commit
|
commitdiff
|
tree
2018-03-27
M
a
rk Abr
a
ham
Mo
r
e gcc-8 fi
x
es fo
r
POWER
commit
|
commitdiff
|
tree
2018-03-21
Mark
A
br
a
ha
m
Version 201
8
.
1
commit
|
commitdiff
|
tree
2018-03-21
Ma
r
k Abra
h
am
Me
r
g
e "Merge
branch release-2
0
16
into r
e
lease-2018
.
.
.
commit
|
commitdiff
|
tree
2018-03-21
Mark
Abr
a
h
a
m
U
pdate release
notes for 2018
.
1
commit
|
commitdiff
|
tree
2018-03-20
M
a
rk A
b
r
a
ham
Merge branch release
-
2016
into release
-
2018
commit
|
commitdiff
|
tree
2018-03-20
M
ark Abrah
a
m
Up
d
ate use of gpu_id in Jenkins
commit
|
commitdiff
|
tree
2018-03-20
Berk Hes
s
Disallow single simulation
w
i
th multisi
m
commit
|
commitdiff
|
tree
2018-03-20
Mark Abraham
Updat
e
use of gpu_id in Je
n
kins
commit
|
commitdiff
|
tree
2018-03-19
Mark Abrah
a
m
Fix VSX SIMD
wit
h
gc
c
8
commit
|
commitdiff
|
tree
2018-03-16
Berk Hess
Correct PMF sign error in
A
W
H bias shari
n
g
commit
|
commitdiff
|
tree
2018-03-14
B
e
rk Hess
Improve inter-simu
l
ation sign
a
ling
commit
|
commitdiff
|
tree
2018-03-14
Berk
Hess
Fi
x
mdrun signal
l
ing w
i
t
h AWH
b
ias sharin
g
commit
|
commitdiff
|
tree
2018-03-13
Berk Hess
A
dd AWH fixes
t
o release n
o
tes
commit
|
commitdiff
|
tree
2018-03-13
B
e
rk H
e
ss
F
i
x AWH ensemble checkpoi
n
tin
g
commit
|
commitdiff
|
tree
2018-03-13
Berk Hes
s
F
ix AWH deconvolution when shar
i
ng
a
bias
commit
|
commitdiff
|
tree
2018-03-13
Szilá
r
d Páll
Fix clan
g
6
.
0
with C
U
DA 9
.
0
commit
|
commitdiff
|
tree
2018-03-09
B
erk Hess
Correct pdb2
g
mx
-missing option
commit
|
commitdiff
|
tree
2018-03-06
Mark Abraham
Fixed dvdlam
b
d
a
for
S
HAKE + F
E
commit
|
commitdiff
|
tree
2018-03-05
S
zil
á
rd Páll
A
dd to the con
t
ribut
o
r section
commit
|
commitdiff
|
tree
2018-03-01
Berk He
s
s
Detect AMD
SMT to
p
ology
commit
|
commitdiff
|
tree
2018-02-27
Mark Abraham
F
i
x G
P
U utils test
commit
|
commitdiff
|
tree
2018-02-26
Mark Abra
h
am
P
ermit define
.
mdp
field to assi
g
n values
commit
|
commitdiff
|
tree
2018-02-26
Ma
r
k Ab
r
aham
Organize for record
i
ng 20
1
6-era
release not
e
s a
n
d
add
.
.
.
commit
|
commitdiff
|
tree
2018-02-23
B
erk
Hess
Fix m
d
i
n
tegra
t
or w
i
th Nos
e
-
H
oover coupling
commit
|
commitdiff
|
tree
2018-02-16
Mark
A
b
r
aham
Me
r
ge b
r
anch r
e
le
a
se-2
0
16 into
r
e
lea
s
e-2018
commit
|
commitdiff
|
tree
2018-02-16
M
ark
A
braham
Bum
p
ed patch version
f
or ne
x
t
release
commit
|
commitdiff
|
tree
2018-02-16
B
erk Hess
Correct mul
t
isi
m
MPI b
a
rrier
commit
|
commitdiff
|
tree
2018-02-16
M
a
r
k
Abraham
V
ers
i
on 2
0
16
.
5
commit
|
commitdiff
|
tree
2018-02-14
Mark Abraham
Me
r
ge b
r
anch release-2016 into release-201
8
commit
|
commitdiff
|
tree
2018-02-14
Berk
H
e
ss
Fix range bug in add_sele
c
tio
n
_groups i
n
tngi
o
.
cpp
commit
|
commitdiff
|
tree
2018-02-14
Be
r
k Hess
Fix grompp net charge check
commit
|
commitdiff
|
tree
2018-02-14
B
erk Hess
Fix gr
o
mpp ne
t
charge check
commit
|
commitdiff
|
tree
2018-02-14
Mark Abraham
Pre
p
a
r
e release
n
o
t
es for 2018
.
1
commit
|
commitdiff
|
tree
2018-02-13
Mark Abraham
Use dea
t
h t
e
st only when
supported
commit
|
commitdiff
|
tree
2018-02-08
Mark
A
b
r
a
h
a
m
Merge "Merge
b
ranch
r
elease-20
1
6 into r
e
lease
-
2
0
18
.
.
.
commit
|
commitdiff
|
tree
2018-02-08
Mark Abraham
M
erge branch release-2016
i
nto release-2018
commit
|
commitdiff
|
tree
2018-02-06
Mark Abraha
m
Prevent l
o
g fil
e
en
e
rgy average p
r
inting dividing by
.
.
.
commit
|
commitdiff
|
tree
2018-01-24
Mark Abra
h
am
M
o
ve Windo
w
s ic
c
conf
i
g to post-su
b
mi
t
testing
commit
|
commitdiff
|
tree
2018-01-18
Be
r
k
Hess
Fi
x
COMM
re
m
oval on part of the sys
t
em
commit
|
commitdiff
|
tree
2018-01-17
Alek
s
ei Iupi
n
ov
F
i
x
box scaling
in PME mixed
mode
commit
|
commitdiff
|
tree
2018-01-17
Berk Hess
Re-en
a
ble GPU with walls and 1 energy group
commit
|
commitdiff
|
tree
2018-01-16
Ber
k
Hess
Avoid mdrun ec
h
oing "No option -multi"
commit
|
commitdiff
|
tree
2018-01-11
M
a
r
k
A
bra
h
am
Bump
e
d version for next p
a
t
c
h release
commit
|
commitdiff
|
tree
2018-01-11
Mark
A
braham
Version 201
8
commit
|
commitdiff
|
tree
2018-01-11
Mar
k
A
b
raham
Announce in
u
ser
l
og
f
i
l
es that featur
e
s are de
p
recated
.
commit
|
commitdiff
|
tree
2018-01-11
Roland Schu
l
z
Fix GMX_ENABLE_A
V
X512_TESTS being internal
commit
|
commitdiff
|
tree
2018-01-10
Mar
k
A
b
raham
Fix
a
utomate
d
GPU ID a
s
signmen
t
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Pál
l
User guide updates
t
o GPU sec
t
ion
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Rel
e
a
s
e note
s
tweaks
commit
|
commitdiff
|
tree
2018-01-10
Mark Abraham
Ad
d
release notes to
s
o
urce re
p
o
commit
|
commitdiff
|
tree
2018-01-10
Erik Lindahl
Im
p
rove pdb2gmx for nonstandard
residue
t
ypes
commit
|
commitdiff
|
tree
2018-01-10
S
zilárd Páll
Install guide upda
t
es
commit
|
commitdiff
|
tree
2018-01-10
Szilárd
Páll
Environment variable docs main
t
enance
commit
|
commitdiff
|
tree
2018-01-10
Aleksei Iupinov
D
o
not print PM
E
counter
b
reakdown if it's emp
t
y
commit
|
commitdiff
|
tree
2018-01-10
Mark
Abraham
Handle erroneous command line args
b
ette
r
commit
|
commitdiff
|
tree
next