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Improve version information handling
2014-03-29
T
e
emu Murtola
Im
p
rove version i
n
f
o
r
m
ation handling
commit
|
commitdiff
|
tree
2014-03-29
Teemu Murto
l
a
Better i
n
clude dependency
g
raph
generator
commit
|
commitdiff
|
tree
2014-03-27
Teemu Murt
o
la
Move include dep
e
ndency checks to do
c
-check
commit
|
commitdiff
|
tree
2014-03-27
Teemu
M
urtola
Better au
t
omat
e
d Doxygen do
c
umentation checker
commit
|
commitdiff
|
tree
2014-03-27
Teem
u
Mu
r
tola
M
i
sc
.
Do
x
y
g
e
n
fixes
commit
|
commitdiff
|
tree
2014-03-27
Teemu Murtola
Move th
r
ead_mpi to src/
e
xternal/
commit
|
commitdiff
|
tree
2014-03-24
Teemu Murtol
a
Remove gm
x
preproc
e
ss from include pa
t
h
commit
|
commitdiff
|
tree
2014-03-18
Teemu Murtola
Remove
interac
t
i
ve
help from
c
o
re sel
e
ction p
a
rser
commit
|
commitdiff
|
tree
2014-03-18
Te
e
mu Mu
r
to
l
a
Improve inter
a
ct
i
v
e s
e
le
c
tion input
commit
|
commitdiff
|
tree
2014-03-17
Teemu Mu
r
t
ola
U
pdate man
u
al analysis section
commit
|
commitdiff
|
tree
2014-03-11
Teemu
M
urtol
a
Fix mi
s
c
.
Doxygen
i
s
s
u
e
s
commit
|
commitdiff
|
tree
2014-03-08
T
eemu Murto
l
a
Remove some unnece
s
sary declaratio
n
s
commit
|
commitdiff
|
tree
2014-03-02
T
eemu Murtola
Fix in
c
o
r
rect gri
d
cell size in
g_s
a
s -no
p
bc
commit
|
commitdiff
|
tree
2014-03-01
Teemu Murto
l
a
M
ove def
a
ult library p
a
t
h search to progra
m
context
commit
|
commitdiff
|
tree
2014-02-28
Tee
m
u
M
urt
o
la
Resid
u
al SIMD
Doxygen improvem
e
nts
commit
|
commitdiff
|
tree
2014-02-28
Tee
m
u
Murtol
a
Mis
c
.
Doxygen c
o
nfiguration changes
commit
|
commitdiff
|
tree
2014-02-28
T
eemu Mu
r
tola
Co
n
ver
t
gmx-
s
as to
t
he C++ framework
commit
|
commitdiff
|
tree
2014-02-28
Te
e
mu
Murtola
Add support for non-unifor
m
X
ax
i
s in array
data
commit
|
commitdiff
|
tree
2014-02-27
Teemu Murtol
a
Improv
e
sup
p
ort fo
r
data sets in C++ tools
commit
|
commitdiff
|
tree
2014-02-27
Teemu Murtola
Improve floating poin
t
comparisons in unit t
e
sts
commit
|
commitdiff
|
tree
2014-02-26
Teemu
M
urto
l
a
Misc
.
Dox
y
gen bu
i
l
d s
y
stem improv
e
ments
commit
|
commitdiff
|
tree
2014-02-26
Teemu
M
urtola
Fix GMX_PRIu32 a
n
d G
M
X_PRIu64 for MSV
C
commit
|
commitdiff
|
tree
2014-02-20
Teemu
M
urtola
Add doc
u
m
entation for
usi
n
g Do
x
ygen
commit
|
commitdiff
|
tree
2014-02-16
Tee
m
u Murt
o
l
a
I
m
prove m
a
n
p
age formatting slightly
commit
|
commitdiff
|
tree
2014-02-16
Teemu
M
urtola
F
i
x
d
efault enum values in help outp
u
t
commit
|
commitdiff
|
tree
2014-02-15
Teemu Murtol
a
Fix so
m
e broken links in HTML pa
g
es
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murtola
She
l
l
c
ompletion
s
through Opt
i
ons
commit
|
commitdiff
|
tree
2014-02-09
Teemu
M
u
rtola
Make 'gmx -h' invar
i
ant w
r
t
.
provided
o
ptions
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murtola
R
emove old help forma
t
tin
g
code
commit
|
commitdiff
|
tree
2014-02-09
Tee
m
u Murtola
Make F
i
leNameOptio
n
behave more l
i
k
e old filen
m
pars
e
r
commit
|
commitdiff
|
tree
2014-02-09
Teemu Murtola
Im
p
lement
s
y
n
opsis f
o
r help output
commit
|
commitdiff
|
tree
2014-02-09
Te
e
mu Mu
r
tola
Refactor new help formatting
implementation
commit
|
commitdiff
|
tree
2014-02-08
Teemu Murtola
Fix & u
p
date d
o
c
s for GMX_TEST_OPTIO
N
S
commit
|
commitdiff
|
tree
2014-02-06
Teemu Murtola
Fix b
u
ild of share/template when
i
n
stalled
commit
|
commitdiff
|
tree
2014-02-03
Teemu
M
u
rtol
a
M
e
rge "Merge re
l
ease-4-6 into master"
commit
|
commitdiff
|
tree
2014-02-03
Teemu Murtola
Optimi
z
e Doxygen build
commit
|
commitdiff
|
tree
2014-02-02
Teemu Murtol
a
Fix seg
f
ault in 'gmx -h
'
commit
|
commitdiff
|
tree
2014-02-02
Tee
m
u Murtola
Get rid of src/pr
o
g
rams/gmx/
commit
|
commitdiff
|
tree
2014-02-02
T
eemu
Murt
o
la
Simp
l
ify Opt
i
ons::s
e
t
D
e
s
cription() usage
commit
|
commitdiff
|
tree
2014-02-02
Teemu Murtola
Extend valgrind
s
u
ppressions for
OpenMPI
commit
|
commitdiff
|
tree
2014-02-01
T
eemu Murtola
F
i
x som
e
is
s
u
e
s report
e
d by 'ma
k
e
d
epch
e
ck docc
h
eck'
commit
|
commitdiff
|
tree
2014-01-31
Teemu
M
u
r
to
l
a
Overview docs for unit testing
commit
|
commitdiff
|
tree
2014-01-30
Teemu Mu
r
t
o
l
a
Fix shel
l
completions of ffMUL
T
options
commit
|
commitdiff
|
tree
2014-01-30
Te
e
m
u
Murt
o
l
a
Over
v
i
e
w
docs
fo
r
w
r
apper binary
i
mplementation
commit
|
commitdiff
|
tree
2014-01-30
Teemu Murtola
Overview docs for
using Gromacs as a li
b
r
ary
commit
|
commitdiff
|
tree
2014-01-30
Teemu Murtola
R
e
n
ame P
r
ogramInfo to Command
L
ineProgramConte
x
t
commit
|
commitdiff
|
tree
2014-01-30
Teemu Murtola
Refact
o
r ProgramInfo use
commit
|
commitdiff
|
tree
2014-01-30
Teemu Mu
r
t
o
la
M
o
ve comm
a
nd listing to 'g
m
x help command
s
'
commit
|
commitdiff
|
tree
2014-01-29
Teemu Murtol
a
Fix
e
s t
o
file
n
ame shell completion
s
commit
|
commitdiff
|
tree
2014-01-29
Teemu
Murtola
P
r
i
nt commo
n
options to 'gmx -
h
'
commit
|
commitdiff
|
tree
2014-01-29
Teemu Mur
t
ola
Merge "Merge bra
n
ch 'releas
e
-4-6'"
commit
|
commitdiff
|
tree
2014-01-28
Teemu Murtola
Shell completion exp
o
r
t
from the wrap
p
er binary
commit
|
commitdiff
|
tree
2014-01-28
T
eemu
M
ur
t
ola
Extend version infor
m
ation
o
utpu
t
commit
|
commitdiff
|
tree
2014-01-27
Teemu Murtol
a
Simplify ProgramInfo
commit
|
commitdiff
|
tree
2014-01-22
Teemu Murtola
Use loc
a
l ProgramInfo in CommandLi
n
e
M
od
u
l
eMan
a
g
e
r
commit
|
commitdiff
|
tree
2014-01-21
T
e
e
mu M
u
rtol
a
Remove unused
s
plit
.
h
commit
|
commitdiff
|
tree
2014-01-21
T
eemu Murtola
Improve file name option help
commit
|
commitdiff
|
tree
2014-01-20
Tee
m
u Murtola
Fix te
s
t ref
e
r
en
c
e data
commit
|
commitdiff
|
tree
2014-01-20
Teemu Murtola
R
e
write help output fr
o
m Options
commit
|
commitdiff
|
tree
2014-01-19
Teemu
Murtola
Fix insta
l
le
d
headers
commit
|
commitdiff
|
tree
2014-01-19
T
e
emu Murtola
Move md5
.
* to fileio/
commit
|
commitdiff
|
tree
2014-01-19
T
ee
m
u Mu
r
t
ola
Move strdb
.
* to src/gromacs/fileio/
commit
|
commitdiff
|
tree
2014-01-16
T
e
emu
Murto
l
a
Fix
b
uild with GMX_BUILD_UNITTESTS=OFF
commit
|
commitdiff
|
tree
2014-01-15
T
e
emu Murtola
Supp
o
rt for
64-bit
i
nt and real
va
l
ued Options
commit
|
commitdiff
|
tree
2014-01-15
Teemu Murtola
Remove unused PCA_KEEP_ARGS
commit
|
commitdiff
|
tree
2014-01-15
Teemu Murtola
Unit tests for parse_common_args()
commit
|
commitdiff
|
tree
2014-01-15
Teemu Murtola
Simplify C array handlin
g
in C++ code
commit
|
commitdiff
|
tree
2014-01-15
T
eemu
M
u
r
t
o
la
Reo
r
gani
z
e shar
e
d un
i
t
test code
commit
|
commitdiff
|
tree
2014-01-14
Teemu Murtola
Don't install links
.
dat
commit
|
commitdiff
|
tree
2014-01-14
Teemu M
u
rtola
Split
CommandLineHelpModule into a separate fi
l
e
commit
|
commitdiff
|
tree
2014-01-14
Teem
u
Murtola
Fix line wr
a
pping for long options
commit
|
commitdiff
|
tree
2014-01-13
Te
e
m
u Murt
o
la
Move writeps
.
*
i
nto fi
l
eio/
commit
|
commitdiff
|
tree
2014-01-13
Tee
m
u
Murtola
M
o
ve gm
x
complex
.
h t
o
gromacs/math/
commit
|
commitdiff
|
tree
2014-01-13
Teemu
M
ur
t
ola
Fix
i
nst
a
llatio
n
of HTML
m
a
n
u
al
commit
|
commitdiff
|
tree
2014-01-09
Tee
m
u M
u
rtola
A
dd
m
e
s
s
ages for skipped
t
ests
i
n make check
commit
|
commitdiff
|
tree
2014-01-09
Teem
u
Murtola
F
ix
c
o
pyright check in ad
m
i
n/uncrusti
f
y
.
sh
commit
|
commitdiff
|
tree
2014-01-08
Teemu M
u
rtola
Mo
v
e g
m
x_sort
.
* to src/gromacs/
u
tility/
commit
|
commitdiff
|
tree
2014-01-07
Te
e
mu M
u
rtola
M
ove g
s
tat
.
h to gm
x
an
a
/
commit
|
commitdiff
|
tree
2014-01-07
Teemu
M
u
r
tola
Improve include depende
n
cy s
c
rip
t
commit
|
commitdiff
|
tree
2014-01-05
Teemu Murtola
Support for de
f
ault values for Sel
e
ctionOption
commit
|
commitdiff
|
tree
2014-01-04
Teemu
Murt
o
la
Fi
x
#include
style issue
s
commit
|
commitdiff
|
tree
2014-01-04
Te
e
m
u
Mu
r
tola
Do
n
't print quote
s
o
n
gmx_
f
a
t
al(
)
commit
|
commitdiff
|
tree
2014-01-01
Teemu Murtola
A
dd c
o
pyright year 201
3
to
files modif
i
ed
t
his year
commit
|
commitdiff
|
tree
2014-01-01
Teemu Murtola
In
c
l
u
d
e
CUDA a
n
d
l
atex files
i
n copyrig
h
t chec
k
commit
|
commitdiff
|
tree
2014-01-01
Teemu Murt
o
la
Suppress remaining e
r
r
ors from c
o
pyright scri
p
t
commit
|
commitdiff
|
tree
2014-01-01
Teemu Murtola
Fix remaining
cop
y
r
ight he
a
ders
commit
|
commitdiff
|
tree
2014-01-01
T
e
e
mu Murtola
M
o
r
e
copyright
h
eade
r
upd
a
t
e
s
commit
|
commitdiff
|
tree
2014-01-01
Teemu
M
urtola
Remove o
b
solete large file support info
commit
|
commitdiff
|
tree
2013-12-30
Teemu Murtola
M
ore robu
s
t shell de
t
ection in GMXRC
commit
|
commitdiff
|
tree
2013-12-30
Te
e
mu
Murtol
a
Initialize defaul
t
index groups
for C++ tools
commit
|
commitdiff
|
tree
2013-12-29
Teemu M
u
rtola
Min
o
r vec
.
h
cle
a
nup
commit
|
commitdiff
|
tree
2013-12-29
Teemu Murtola
Fix pkgconfig
flags
with inter
n
al Boost
commit
|
commitdiff
|
tree
2013-12-29
Teemu
M
u
rtola
R
ese
t
SOVE
R
SION for libg
r
oma
c
s
commit
|
commitdiff
|
tree
2013-12-28
T
eemu Murtola
Chan
g
e u
s
e
o
f compiler flags with G
P
U
+ C++
1
1
commit
|
commitdiff
|
tree
2013-12-28
Teem
u
M
urtola
Move
b
in/l
i
b suffix ma
n
a
g
e
m
e
nt into s
e
parate fi
l
e
.
commit
|
commitdiff
|
tree
2013-12-24
Teem
u
M
u
rto
l
a
M
ove
s
hell com
p
letion t
h
i
ngs into a separate f
i
le
commit
|
commitdiff
|
tree
2013-12-24
Teemu Murtola
Get rid of set_default_file_na
m
e()
commit
|
commitdiff
|
tree
2013-12-21
Te
e
m
u Murt
o
la
Move pars
e
_
c
ommon
_
args() into commandline/pargs
.
*
commit
|
commitdiff
|
tree
2013-12-21
Teemu
M
urtola
Move
p
args
.
c
p
p in
t
o src/grom
a
cs/c
o
mman
d
line/
commit
|
commitdiff
|
tree
2013-12-20
T
e
emu Mur
t
o
l
a
Move Progr
a
m
(
) and ShortProgram() i
n
t
o
copyrite
.
h
commit
|
commitdiff
|
tree
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