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2013-12-20	Teemu Murtola	Clean up trajectory time control	commit \| commitdiff \| tree
2013-12-18	Teemu Murtola	Clean up old command line parsing	commit \| commitdiff \| tree
2013-12-08	Teemu Murtola	Don't create symlinks in the build tree	commit \| commitdiff \| tree
2013-12-04	Teemu Murtola	Fix test build with GMX_BUILD_MDRUN_ONLY	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Remove remaining uses of programs.txt	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Uniform behavior for 'make man' and 'make html'	commit \| commitdiff \| tree
2013-12-02	Teemu Murtola	Fix [CHEVRON]/[chevron] for HTML output	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Remove GMX_DOUBLE from config.h	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Don't install headers depending on GMX_INTERNAL_XDR	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Document how to add C++ tools	commit \| commitdiff \| tree
2013-12-01	Teemu Murtola	Adjust more copyright headers	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove unused config.h defines	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Remove obsolete FindGit.cmake	commit \| commitdiff \| tree
2013-11-29	Teemu Murtola	Make help texts refer to gmx-something	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Move gmx_omp.* into src/gromacs/utility/	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Generate gromacs.7 from the wrapper binary	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Fix some #include problems.	commit \| commitdiff \| tree
2013-11-28	Teemu Murtola	Uniform headers in HTML pages	commit \| commitdiff \| tree
2013-11-27	Teemu Murtola	Remove unused gmx_membed.c	commit \| commitdiff \| tree
2013-11-26	Teemu Murtola	Remove #ifdef GMX_THREAD_MPI for basic thread safety.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Update copyright headers in kernels.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Update copyright headers in generated kernels.	commit \| commitdiff \| tree
2013-11-20	Teemu Murtola	Script to automatically update copyright	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add some missing copyright headers.	commit \| commitdiff \| tree
2013-11-19	Teemu Murtola	Add back mechanism for cross-tool hyperlinks.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Reformat existing LGPL copyright notices.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Move binary directory search to ProgramInfo.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Remove more obsolete content from share/html.	commit \| commitdiff \| tree
2013-11-17	Teemu Murtola	Allow copying of HelpWriterContext.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Add listing of programs by topic to HTML output.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Some module dependency cleanup.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Reorganize help writing code.	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Make gmx-gangle more flexible with multiple angles	commit \| commitdiff \| tree
2013-11-16	Teemu Murtola	Turn on most -Wunused warnings for C++ code.	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Consistently handle NULL at argv[argc].	commit \| commitdiff \| tree
2013-11-15	Teemu Murtola	Simplify GMX_X11 handling.	commit \| commitdiff \| tree
2013-11-12	Teemu Murtola	Upgrade Doxygen layout to 1.8.5.	commit \| commitdiff \| tree
2013-10-31	Teemu Murtola	Move more timing routines into timing/.	commit \| commitdiff \| tree
2013-10-30	Teemu Murtola	Markup substitution through HelpWriterContext.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Overview Doxygen pages for analysis framework.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Some overview content for Doxygen documentation.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Misc. Doxygen updates for src/gromacs/utility/.	commit \| commitdiff \| tree
2013-10-28	Teemu Murtola	Simplify code structure for C++ analysis tools	commit \| commitdiff \| tree
2013-10-20	Teemu Murtola	Remove useless warnings from Doxygen logs.	commit \| commitdiff \| tree
2013-10-18	Teemu Murtola	Upgrade layout file to support Doxygen >=1.8.	commit \| commitdiff \| tree
2013-10-16	Teemu Murtola	Remove latex help export.	commit \| commitdiff \| tree
2013-10-15	Teemu Murtola	Fix/improve installation directory logic.	commit \| commitdiff \| tree
2013-10-07	Teemu Murtola	Improve markup substitution in HelpWriterContext.	commit \| commitdiff \| tree
2013-10-07	Teemu Murtola	HTML export from the wrapper binary.	commit \| commitdiff \| tree
2013-10-04	Teemu Murtola	Clean up CTest usage.	commit \| commitdiff \| tree
2013-10-04	Teemu Murtola	Reorganize static/shared library management.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	CMake helper for tracking cache variable changes.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Remove unused shift_util.c.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Improve diagnostics with empty selections.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Man page export from the wrapper binary.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Use filenm.c data for FileNameOption.	commit \| commitdiff \| tree
2013-10-03	Teemu Murtola	Fix warnings with Doxygen 1.8.5.	commit \| commitdiff \| tree
2013-09-29	Teemu Murtola	Remove obsolete efHAT and src/ngmx/dlgtest.	commit \| commitdiff \| tree
2013-09-28	Teemu Murtola	Use git version info in Doxygen.	commit \| commitdiff \| tree
2013-09-26	Teemu Murtola	Merge "Merge branch release-4-6"	commit \| commitdiff \| tree
2013-09-26	Teemu Murtola	thread_mpi: Clean up -Wunused-parameter warnings.	commit \| commitdiff \| tree
2013-09-26	Teemu Murtola	CMake helper for dependent cache variables.	commit \| commitdiff \| tree
2013-09-24	Teemu Murtola	Remove old generated HTML files.	commit \| commitdiff \| tree
2013-09-24	Teemu Murtola	Remove src/contrib/prfn.c and related code.	commit \| commitdiff \| tree
2013-09-23	Teemu Murtola	Merge "Merge branch 'release-4-6'"	commit \| commitdiff \| tree
2013-09-23	Teemu Murtola	Remove obsolete tools.	commit \| commitdiff \| tree
2013-09-21	Teemu Murtola	CMake helper for multichoice options.	commit \| commitdiff \| tree
2013-09-20	Teemu Murtola	CMake cleanup.	commit \| commitdiff \| tree
2013-09-20	Teemu Murtola	Merge branch 'release-4-6'	commit \| commitdiff \| tree
2013-09-19	Teemu Murtola	Make uncrustify.sh more verbose on errors.	commit \| commitdiff \| tree
2013-09-19	Teemu Murtola	Uniform code path for writing out console help.	commit \| commitdiff \| tree
2013-09-19	Teemu Murtola	Framework for help export from wrapper binary.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Add option to build a standalone mdrun binary only.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Move mdrun into the wrapper binary.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Make parse_common_args() not exit.	commit \| commitdiff \| tree
2013-09-13	Teemu Murtola	Remove unused -man output formats.	commit \| commitdiff \| tree
2013-09-09	Teemu Murtola	Make gmx_ana_pos_t a C++ class.	commit \| commitdiff \| tree
2013-09-09	Teemu Murtola	Add some legends to C++ tool output.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Remove duplicate .nr members from selection structs.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Remove gmx_ana_indexmap_t::bMapStatic.	commit \| commitdiff \| tree
2013-09-08	Teemu Murtola	Move gmx_ana_pos_t::g into gmx_ana_indexmap_t.	commit \| commitdiff \| tree
2013-09-06	Teemu Murtola	Support for parallel data modules.	commit \| commitdiff \| tree
2013-09-05	Teemu Murtola	AbstractAnalysisData module handling into a separate...	commit \| commitdiff \| tree
2013-09-01	Teemu Murtola	Merge "Merge branch release-4-6 into master"	commit \| commitdiff \| tree
2013-08-30	Teemu Murtola	Clean-up and improvements in C++ tools.	commit \| commitdiff \| tree
2013-08-24	Teemu Murtola	Fine-tune copyright printing.	commit \| commitdiff \| tree
2013-08-24	Teemu Murtola	[RFC] Really uniform startup path for all binaries.	commit \| commitdiff \| tree
2013-08-21	Teemu Murtola	Statistics for gmx-distance.	commit \| commitdiff \| tree
2013-08-21	Teemu Murtola	Lifetime statistics into gmx-select.	commit \| commitdiff \| tree
2013-08-16	Teemu Murtola	Replacement for g_bond and g_dist.	commit \| commitdiff \| tree
2013-08-11	Teemu Murtola	Support for multiple analysis data sets in modules.	commit \| commitdiff \| tree
2013-08-11	Teemu Murtola	Base support for multiple analysisdata data sets.	commit \| commitdiff \| tree
2013-08-10	Teemu Murtola	Remove superfluous selection names from refdata.	commit \| commitdiff \| tree
2013-08-10	Teemu Murtola	Add check for unsorted index groups in selections.	commit \| commitdiff \| tree
2013-08-09	Teemu Murtola	Treat exceptions better in interactive selections.	commit \| commitdiff \| tree
2013-08-05	Teemu Murtola	Add unit tests for index groups in selections.	commit \| commitdiff \| tree
2013-08-04	Teemu Murtola	Add unit test coverage for simple selection keywords.	commit \| commitdiff \| tree
2013-08-03	Teemu Murtola	File utils to C++.	commit \| commitdiff \| tree
2013-08-02	Teemu Murtola	Add an option to disable all asserts for coverage.	commit \| commitdiff \| tree
2013-07-30	Teemu Murtola	Handle wrapper binary options also for symlinks.	commit \| commitdiff \| tree
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