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Tell cppcheck that .cpp and .cu files are c++
2017-10-05
Szilárd Páll
Refact
o
r
s
c
aled box
h
andling for PME/Ewald
commit
|
commitdiff
|
tree
2017-10-05
Szi
l
ár
d
Páll
Fix
p
air
l
i
st array ass
e
rt
i
on
commit
|
commitdiff
|
tree
2017-10-05
Sz
i
lárd Páll
Avoi
d
-W
m
issing-
p
rototypes w
a
rnings in clang CUDA buil
d
s
commit
|
commitdiff
|
tree
2017-10-03
Szilárd Páll
Move Ewa
l
d
spl
i
tti
n
g-r
e
lated code to
ewald-utils
commit
|
commitdiff
|
tree
2017-10-03
S
z
ilárd
Páll
E
nable c
o
mpili
n
g
C
U
DA device co
d
e wit
h
cla
n
g
commit
|
commitdiff
|
tree
2017-09-28
Szilárd Pá
l
l
Correct misplaced
C
UDA timin
g
event
r
ecor
d
commit
|
commitdiff
|
tree
2017-09-26
S
z
ilárd
P
áll
Rename GPU launch/wait cycle counters
commit
|
commitdiff
|
tree
2017-09-18
S
zilár
d
Pál
l
Minor refactoring of CUDA
non-bonded kernels
commit
|
commitdiff
|
tree
2017-09-14
Szi
l
árd Páll
CUDA 9/V
o
lta support
f
or the
p
r
u
n
i
n
g k
e
rnel
commit
|
commitdiff
|
tree
2017-09-12
Szilá
r
d Páll
Merge
b
ranch
'
r
e
l
ea
s
e-
2
016'
commit
|
commitdiff
|
tree
2017-09-11
Szil
á
rd Pál
l
NVIDIA
V
olta performanc
e
t
weaks
commit
|
commitdiff
|
tree
2017-08-29
Sz
i
lárd Páll
F
i
x typo and tweak
env
var docs
commit
|
commitdiff
|
tree
2017-08-29
Szi
l
á
r
d
P
áll
Avoid div
i
sion by zero
i
s pruning part calculati
o
n
commit
|
commitdiff
|
tree
2017-08-21
Sz
i
lárd P
á
ll
Add OpenCL pruning
ke
r
nels and
la
u
nch/timin
g
log
i
c
commit
|
commitdiff
|
tree
2017-08-18
Szil
á
rd Páll
Impr
o
ve awkward handling of
GMX_CUDA_
T
ARGET* help
commit
|
commitdiff
|
tree
2017-08-18
Szil
á
r
d
P
á
ll
Add
CUDA prun
i
ng kernels
a
nd laun
c
h/timing logic
commit
|
commitdiff
|
tree
2017-07-27
Szilárd Páll
Inform us
e
rs about the end of
r
un DLB
sta
t
e
commit
|
commitdiff
|
tree
2017-06-26
S
z
ilárd Páll
Add ARM_NEON_ASIMD post-
s
ubmit t
e
st
commit
|
commitdiff
|
tree
2017-06-21
Szilárd
P
áll
R
e-enabl
e
l
o
st DD warning + min
o
r code mod
e
rniz
a
tion
commit
|
commitdiff
|
tree
2017-06-20
Sz
i
lárd Páll
Re-enab
l
e accidental
l
y lost DD war
n
ing
commit
|
commitdiff
|
tree
2017-06-20
Szilárd P
á
ll
Refact
o
ring +
c
la
r
i
f
i
c
ation of DLB
s
tate handling
commit
|
commitdiff
|
tree
2017-06-15
Szilárd
P
á
l
l
A
llow disabling th
e
explicit use of CUDA textures
commit
|
commitdiff
|
tree
2017-06-07
Szilárd Páll
Suppress s
m
_
2x deprecatio
n
warning wit
h
C
U
DA 8
.
0
commit
|
commitdiff
|
tree
2017-06-05
Szilárd
P
áll
Add
CUDA 8
.
0
+ SIMD pre-submit test
commit
|
commitdiff
|
tree
2017-06-02
Szil
á
rd Pál
l
Ad
d
ARM_NEON post-sub
m
it
test
commit
|
commitdiff
|
tree
2017-05-29
S
z
i
lárd Pá
l
l
Quotes are
cool, typo-
f
ree ones
a
r
e
even "cooler"
commit
|
commitdiff
|
tree
2017-05-23
Sz
i
lárd Páll
Add basic
d
o
xygen
for the V
e
rlet nonbo
n
ded module
commit
|
commitdiff
|
tree
2017-03-29
Szilárd Páll
Re
f
actor CUDA kernel use o
f
table
s
commit
|
commitdiff
|
tree
2017-03-29
Szi
l
árd
Páll
Add CUDA
util
f
unct
i
o
n for constan
t
loa
d
s
commit
|
commitdiff
|
tree
2017-03-25
S
z
ilá
r
d Páll
C
o
nditional tweak in the
n
on
b
onded G
P
U kernels
commit
|
commitdiff
|
tree
2017-03-17
Szilárd Páll
All
o
w by
p
a
s
s
i
ng
Op
e
nCL device compatibility
c
h
eck
commit
|
commitdiff
|
tree
2017-03-16
Szilárd Páll
Print c
o
d
e
of unkn
o
wn O
p
enCL error
commit
|
commitdiff
|
tree
2017-03-09
S
z
ilárd
P
áll
F
ix mdrun hangi
n
g upon exit
w
ith
sep PME ranks
commit
|
commitdiff
|
tree
2017-01-24
S
zilá
r
d Páll
Remov
e
unu
s
ed
argume
n
t
i
n GPU ker
n
els
commit
|
commitdiff
|
tree
2016-12-09
S
z
ilá
r
d Páll
Turn of
f
hwloc sup
p
ort when static
lib found
commit
|
commitdiff
|
tree
2016-11-17
S
zilárd
P
áll
C
o
rrect kernel l
a
unch b
o
u
n
ds
f
or CUDA sm_60
commit
|
commitdiff
|
tree
2016-11-01
Szilá
r
d
Páll
Merge "Merge branch re
l
ease-2016"
commit
|
commitdiff
|
tree
2016-10-28
Szi
l
árd
Páll
GPU-
r
elate
d
addi
t
io
n
s
t
o
t
h
e install/
u
ser
g
u
ide
commit
|
commitdiff
|
tree
2016-10-27
Szilárd Páll
Ma
k
e -cl
-
fast-
r
e
laxed-math default
commit
|
commitdiff
|
tree
2016-10-26
S
z
ilárd Pá
l
l
Add
G
MX
_
DISABLE_GPU_TIMING env var
commit
|
commitdiff
|
tree
2016-10-09
Szilárd Páll
Cor
r
ect k
e
rnel lau
n
ch bounds
f
o
r CUDA sm_60
commit
|
commitdiff
|
tree
2016-08-27
Sz
i
lárd Páll
M
ak
e
A
S
AN/TSAN
/
MSAN build types easier to discover
commit
|
commitdiff
|
tree
2016-07-08
Szilárd Páll
Add
P
D
F
me
t
adata t
o
the
ma
n
ual
commit
|
commitdiff
|
tree
2016-07-08
Szilár
d
Páll
User guide
c
l
a
r
ification
s
commit
|
commitdiff
|
tree
2016-07-07
Szilárd
Páll
Add user guide info
on CUDA application
c
locks
commit
|
commitdiff
|
tree
2016-07-05
Szilárd Páll
Document GMX_GPU_A
P
P
LICATION_C
L
OCKS
commit
|
commitdiff
|
tree
2016-07-04
Szilárd P
á
ll
Disable NVIDIA JI
T
c
a
che wi
t
h
O
penCL
commit
|
commitdiff
|
tree
2016-06-14
S
zilá
r
d
Pál
l
Fix CUDA build with mu
l
tip
l
e compila
t
ion units
commit
|
commitdiff
|
tree
2016-06-05
Szi
l
árd Páll
A
dd su
p
port
f
or CUDA
CC 6
.
0
/
6
.
1
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Add env
.
var
.
t
o
enable OpenCL caching
commit
|
commitdiff
|
tree
2016-06-02
Szilárd Páll
Fix O
p
enCL bi
n
ary cache file name generat
i
on
commit
|
commitdiff
|
tree
2016-05-05
S
zil
á
r
d
P
áll
R
emove CUD
A
h
ost compil
e
r consiste
n
cy
c
hec
k
s
commit
|
commitdiff
|
tree
2016-04-28
Szilárd
Páll
Workaro
u
nd for gcc
f
alse p
o
sitive warning
commit
|
commitdiff
|
tree
2016-04-27
Szilárd Páll
Fix multiple MP
I
ra
n
ks p
e
r node
w
i
t
h OpenC
L
commit
|
commitdiff
|
tree
2016-04-26
Szilá
r
d Pál
l
Fix OpenCL assert
i
on
commit
|
commitdiff
|
tree
2016-04-19
Szilárd Páll
Move o
u
t CUDA
profiler triggers fro
m
NBNXN
commit
|
commitdiff
|
tree
2016-04-13
Szi
l
á
r
d
Páll
Spelling
fixes
commit
|
commitdiff
|
tree
2016-04-13
Szilárd Páll
Do no
t
create empty man/man7 di
r
ect
o
ry
commit
|
commitdiff
|
tree
2016-04-04
Szil
á
rd P
á
ll
M
ark
m
ore v
a
riables as advanc
e
d
commit
|
commitdiff
|
tree
2016-03-31
Szilár
d
P
áll
refactor CUD
A
texture-
b
ased table ini
t
i
a
lizat
i
on
commit
|
commitdiff
|
tree
2016-03-31
Sz
i
lárd Páll
Fix multiple tMPI ranks per OpenCL
device
commit
|
commitdiff
|
tree
2016-03-30
S
z
ilárd P
á
l
l
LJ comb
i
n
ation
rule ker
n
e
l
s for
O
p
enCL
commit
|
commitdiff
|
tree
2016-03-30
Szilárd Páll
Re-
e
nable i-atom type lo
c
a
l
m
em prefetch in OpenCL
commit
|
commitdiff
|
tree
2016-03-30
Szilár
d
P
á
ll
Describe AMD A
P
P
S
DK 3
.
0 issues in t
h
e
g
u
i
de
commit
|
commitdiff
|
tree
2016-03-17
Szil
á
rd Páll
F
i
xe
d
OpenC
L
e/fshift clear
k
ernel
first invoc
a
t
i
o
n
commit
|
commitdiff
|
tree
2016-02-26
Szilárd Páll
F
ix leftover load() calls in
the
s
i
m
d util heade
r
s
commit
|
commitdiff
|
tree
2016-02-19
Szilárd Páll
Fix OpenC
L
table interpolations of E
w
a
l
d correct
i
on
commit
|
commitdiff
|
tree
2016-02-17
Szilár
d
Páll
reintro
d
uce supercl interaction mas
k
cons
t
ant
commit
|
commitdiff
|
tree
2016-02-17
Szilár
d
Páll
c
hange macro
s
to c
o
ns
t
ants in GPU code
commit
|
commitdiff
|
tree
2016-02-15
Szi
l
á
rd Páll
A
l
low GMX_NB_
M
IN_CI
=
0
t
o
b
e pass
e
d
commit
|
commitdiff
|
tree
2016-02-11
Szilá
r
d Páll
Re-enable LJ
-
PME
+
Lorentz-Bert
h
elot on
GPUs
commit
|
commitdiff
|
tree
2016-02-08
Szilárd Pá
l
l
H
and
l
e uniform
l
y
G
MX_OC
L
_NOG
E
NCAC
H
E
commit
|
commitdiff
|
tree
2016-01-26
Szilárd Páll
GPU code reorganizat
i
on and tweaks
commit
|
commitdiff
|
tree
2016-01-20
Szi
l
á
r
d
Páll
M
e
rge re
m
ote-trac
k
i
ng b
r
an
c
h 'origin/re
l
ease-
5
-1' into
.
.
.
commit
|
commitdiff
|
tree
2016-01-09
Szilá
r
d Pá
l
l
split NBNX
N
CUDA ke
r
nels into four compilatio
n
un
i
t
s
commit
|
commitdiff
|
tree
2015-10-15
Szi
l
á
r
d Páll
A
dd
C
U
DA nvcc
>=7
.
0 s
u
pport
commit
|
commitdiff
|
tree
2015-10-15
Szilárd Páll
Correct CUD
A
versio
n
co
m
par
i
sons
commit
|
commitdiff
|
tree
2015-05-06
Szilárd Páll
M
e
rge "Merge release-4-6 in
t
o
release-
5
-0" i
n
to rel
e
ase
-
5-0
commit
|
commitdiff
|
tree
2015-04-21
Szilárd Pál
l
All
o
w ma
n
ually s
e
tt
i
ng
t
a
r
g
e
t
GPU architectures
commit
|
commitdiff
|
tree
2015-04-17
S
z
ilárd Páll
define CUDA version and texo
b
j support in
conf
i
g
.
h
commit
|
commitdiff
|
tree
2014-11-29
Szilárd P
á
ll
A
d
d kernel and c
o
mpiler
suport for CC 3
.
7 d
e
vices
commit
|
commitdiff
|
tree
2014-11-17
Szilárd Páll
Allow incr
e
a
sing CUDA thread b
l
o
c
k size
commit
|
commitdiff
|
tree
2014-11-17
S
z
i
l
árd
Páll
Add CU
D
A compile
r
s
u
pport for
C
C 5
.
0
commit
|
commitdiff
|
tree
2014-11-14
Szilá
r
d Páll
S
t
a
rt n
v
prof
pr
o
fi
l
ing at counter reset
commit
|
commitdiff
|
tree
2014-09-26
Szilárd Pá
l
l
Fix incorrect assertion st
a
tement
commit
|
commitdiff
|
tree
2014-09-09
Szilárd Páll
Fix mal
f
ormed CUDA v
e
rsion macro check
commit
|
commitdiff
|
tree
2014-06-01
S
zil
á
rd Páll
Add quote on the kT-k
j
/
mol co
n
version factor
commit
|
commitdiff
|
tree
2014-03-11
Szilá
r
d
Páll
Bump required CUDA versio
n
to 4
.
0
commit
|
commitdiff
|
tree
2014-01-28
Szilárd Páll
clarified O
p
enMP-r
e
la
t
ed t
h
i
n
gs
i
n mdrun h
e
lp/m
a
n
commit
|
commitdiff
|
tree
2013-11-19
Szilárd
Páll
Fix D
D
load balancing bug with
GPU
sharing
commit
|
commitdiff
|
tree
2013-05-30
S
zilárd Páll
fix unnec
e
ssary switch
t
o po
l
ling
GPU
wait
commit
|
commitdiff
|
tree
2013-02-10
Sz
i
lár
d
Páll
use leg
a
cy CUD
A
non-bo
n
de
d
kernel
s
only on Fermi
commit
|
commitdiff
|
tree
2013-01-18
Sz
i
lá
r
d P
á
ll
fix OpenMP detection on Mac OS brok
e
n by a
6
fe
e
0b
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
a
d
ded mi
s
s
ing cleanup of some
n
b
nxn_c
u
da data
commit
|
commitdiff
|
tree
2013-01-17
S
z
ilár
d
Páll
Merge change
s
I9
3
0b316c,I
e
a4283e0,I1
0
3648f8 in
t
o releas
e
-4-6
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
u
s
e the compiler versi
o
n provided
b
y CMake >=2
.
8
.
9
commit
|
commitdiff
|
tree
2013-01-17
Szilárd Páll
note
t
he re
a
son for aut
o
-disabling GPU su
p
p
o
rt in CMake
commit
|
commitdiff
|
tree
2013-01-17
S
zil
á
rd Pá
l
l
cl
a
rify word
i
ng of GPU driver-related
n
otes
commit
|
commitdiff
|
tree
2013-01-15
S
z
i
l
á
r
d Páll
disable OpenMP with all OS
X
g
cc 4
.
2-based
compile
r
s
commit
|
commitdiff
|
tree
2012-12-19
Szi
l
árd
P
áll
M
e
r
g
e "Av
o
id using undefined
CM
a
k
e
variables"
int
o
.
.
.
commit
|
commitdiff
|
tree
next