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Added SHARED_VERSION_INFO to libgmxpreprocess.
2010-07-20
Rossen Apostolov
Add
e
d
SHARED_VERSION_INFO to libgmxpre
p
r
ocess
.
commit
|
commitdiff
|
tree
2010-07-20
Rossen Apostolov
Moved the
X
11 a
u
t
o
m
ake
d
e
p
endency
f
l
ag insid
e
ngm
x
.
commit
|
commitdiff
|
tree
2010-07-20
R
ossen Apos
t
olov
Di
s
abled adjustm
e
nt of ewald_rtol for OpenM
M
.
commit
|
commitdiff
|
tree
2010-07-20
Rossen Apost
o
lov
By
default G
M
X
_ACCELERATION i
s
now "auto
"
.
commit
|
commitdiff
|
tree
2010-07-20
Rossen Apostol
o
v
Added su
p
port fo
r
OpenMM
-
2
.
0, and CUDA-3
.
1 is now required
.
commit
|
commitdiff
|
tree
2010-07-02
Rossen Aposto
l
ov
D
isable by
d
efault ia64 assem
b
ly loops
.
Those wil
l
.
.
.
commit
|
commitdiff
|
tree
2010-07-02
Ro
s
sen Apostolov
Merge branch 'master' of git
.
groma
c
s
.
org
:
gromacs
commit
|
commitdiff
|
tree
2010-07-02
Ross
e
n
A
postol
o
v
Disable All
v
sAl
l
k
e
rnels for very
small syst
e
m
s (
<
.
.
.
commit
|
commitdiff
|
tree
2010-06-24
Rossen Apostolov
Init
i
al C
T
est
supp
o
rt
commit
|
commitdiff
|
tree
2010-06-23
Rossen Apostolov
Increased
SHARE
D
_VERSI
O
N_INF
O
t
o 6:0:0 (closing
bug
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Rosse
n
Apostolov
Small
cle
a
nup of the ope
n
mm se
c
tion i
n
md
r
u
n
.
c
commit
|
commitdiff
|
tree
2010-06-16
Rossen Apo
s
tolov
M
erge branch 'master' of
git
.
groma
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2010-06-16
Rossen Apostolov
F
ixe
d
t
h
e
command
l
ine option
s
for
G
P
U
bi
n
ar
i
es
.
commit
|
commitdiff
|
tree
2010-06-08
Ro
s
sen Apostolov
Merge bran
c
h
'
mast
e
r' o
f
gi
t
.
grom
a
cs
.
org:gr
o
m
a
c
s
commit
|
commitdiff
|
tree
2010-06-08
Rossen Ap
o
stolov
Added miss
i
n
g
C-terminal oxygens OC1 a
n
d
O
C
2 to the
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Ros
s
en Apos
t
ol
o
v
Issue a warni
n
g about
using hardcode
d
OBC
s
c
ale factors
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Rossen Ap
o
stolov
OpenMM interface:
i
s
s
ue a warning when
t
he speci
f
ied
.
.
.
commit
|
commitdiff
|
tree
2010-05-14
R
o
ssen
A
postol
o
v
The
relative error
f
or cal
c
ula
t
ion of Ewald and PME
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
Ross
e
n
A
postolov
Merge branch 'master' of
g
it
.
grom
a
c
s
.
org:gromacs
commit
|
commitdiff
|
tree
2010-05-12
Rossen
A
postolov
Fix for Urey-Bra
d
ley poten
t
ial
in O
p
en
M
M
commit
|
commitdiff
|
tree
2010-05-11
Ross
e
n Apostolov
A
dded
support
for Urey-Bradley po
t
entials to the op
e
nmm
.
.
.
commit
|
commitdiff
|
tree
2010-05-04
Rossen Ap
o
stolov
Fixed i
m
proper error m
e
ssage i
n
openm
m
_wrappe
r
.
commit
|
commitdiff
|
tree
2010-04-01
R
o
sse
n
Apostolov
Minor fixes o
f
typos
.
commit
|
commitdiff
|
tree
2010-03-31
Rosse
n
Apost
o
lov
Fixed a gmx_war
n
ing
c
r
as
h
in openmm_wrapper
.
cpp
commit
|
commitdiff
|
tree
2010-03-31
Rosse
n
Aposto
l
ov
Fi
x
ed src/contrib/op
t
i
ons
.
c to use the new parse_common
_
arg
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-27
Ros
s
en
Apostolov
O
penMM: "m
d
" option is now accepted
.
commit
|
commitdiff
|
tree
2010-03-24
Rossen Apostolov
Allowin
g
a
lso CUDA ve
r
sions later than 2
.
3
.
commit
|
commitdiff
|
tree
2010-03-24
Rossen Apostolov
Signal handling i
s
now enabl
e
d
for the openmm platfo
r
m
.
commit
|
commitdiff
|
tree
2010-03-17
R
o
s
s
en Apostolov
openmm
:
s
o
m
e
cleanup i
n
md_op
e
nmm
.
c and mdru
n
.
c
commit
|
commitdiff
|
tree
2010-03-12
Ro
s
sen
A
postolov
Enabled checkpoints i
n
O
p
enMM
.
commit
|
commitdiff
|
tree
2010-03-12
Ros
s
en Ap
o
s
tolov
Automatically d
i
sable thr
e
ad
s
for Open
M
M buil
d
s
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apo
s
tolov
Various fi
x
es
.
commit
|
commitdiff
|
tree
2010-03-11
Ros
s
en Ap
o
stolov
Sma
l
l
fixes in mdru
n
desc
.
; e
n
able periodic
m
o
l
ecu
l
es
commit
|
commitdiff
|
tree
2010-03-11
Szilar
d
P
all
Open
M
M
build not dependent on fftw any
m
ore
commit
|
commitdiff
|
tree
2010-03-11
Szi
l
ard Pall
fixed mdrun verbosity
w
ith O
p
enM
M
buil
d
commit
|
commitdiff
|
tree
2010-03-11
S
zil
a
rd Pall
fixed
a
m
i
ssing
comma
and a typ
o
i
n
op
e
nmm_wrapper
commit
|
commitdiff
|
tree
2010-03-11
Ros
s
e
n Apo
s
to
l
ov
E
n
a
l
bed -maxh option fo
r
u
s
a
g
e with
Open
M
M binarie
s
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
Clean
e
d up do_md_openmm
.
commit
|
commitdiff
|
tree
2010-03-11
S
zilard Pa
l
l
Delete src/ke
r
nel/do_md_open
m
m_no
p
a
t
ch
.
h
,
it's not
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Szi
l
a
r
d P
a
ll
Min
o
r cl
e
an
u
p, s
o
me re
a
rrangaments, and commenting
.
commit
|
commitdiff
|
tree
2010-03-11
S
zilard Pall
Rev
e
rted stu
p
id cha
n
ge in CMa
l
eLis
t
s
.
txt
commit
|
commitdiff
|
tree
2010-03-11
Szilard
P
all
R
e
named
m
d_openmm
into open
m
m
_wr
a
pper, and do_md_openmm
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
Rew
o
rked the integrator and thermos
t
a
t
options
.
commit
|
commitdiff
|
tree
2010-03-11
Rossen
Apo
s
tolov
Fixe
d
the w
r
o
n
g output tim
e
f
rames
commit
|
commitdiff
|
tree
2010-03-11
R
o
s
s
e
n
Apostolov
do_md_op
e
nnmm
.
h (aka
patched
)
now w
o
rks
b
ut the time
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
R
o
ssen Ap
o
stolov
Initi
a
l portin
g
, do
_
md_openmm_nopatch
.
h is used
.
commit
|
commitdiff
|
tree
2009-10-02
Ross
e
n Aposto
l
ov
Users are now refe
r
ed to
the n
e
w
website in
c
a
se of
.
.
.
commit
|
commitdiff
|
tree
2009-08-17
Rossen Apostolov
Fixed
inc
o
rrect scaling of
forces
in reciprocal space
.
.
.
commit
|
commitdiff
|
tree