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Update use of gpu_id in Jenkins
2018-03-20
Mark Abraham
Update u
s
e
o
f
gpu_id
i
n Jenkins
commit
|
commitdiff
|
tree
2018-03-20
B
e
rk Hess
Disallow single simulation with multisim
commit
|
commitdiff
|
tree
2018-03-19
Mark Abraham
Fix VSX SIMD with gc
c
8
commit
|
commitdiff
|
tree
2018-03-16
Berk Hess
Cor
r
ect PMF
s
ign error in AWH bias sharin
g
commit
|
commitdiff
|
tree
2018-03-14
Berk Hess
I
mprov
e
inter-simul
a
tio
n
s
ignalin
g
commit
|
commitdiff
|
tree
2018-03-14
Be
r
k
H
e
ss
Fi
x
mdrun
s
ignalling
with AWH bias sharing
commit
|
commitdiff
|
tree
2018-03-13
Ber
k
Hess
Add A
W
H
f
ix
e
s
to releas
e
notes
commit
|
commitdiff
|
tree
2018-03-13
Berk H
e
ss
Fix AWH ensemble chec
k
pointing
commit
|
commitdiff
|
tree
2018-03-13
Berk Hess
Fix AWH deconvo
l
ution when sharing a bias
commit
|
commitdiff
|
tree
2018-03-13
Sz
i
l
árd Páll
Fix
c
l
ang 6
.
0
wi
t
h CUDA 9
.
0
commit
|
commitdiff
|
tree
2018-03-09
B
erk H
e
ss
Corr
e
ct pdb2
g
mx -missing o
p
tio
n
commit
|
commitdiff
|
tree
2018-03-06
Mark Abr
a
ham
Fi
x
ed dv
d
l
a
mbda for SHAKE + FE
commit
|
commitdiff
|
tree
2018-03-05
Szilárd
Páll
A
d
d to the contributor section
commit
|
commitdiff
|
tree
2018-03-01
Berk Hess
De
t
ect AMD
SM
T
topology
commit
|
commitdiff
|
tree
2018-02-27
M
a
r
k
Abraham
Fix GPU utils
t
est
commit
|
commitdiff
|
tree
2018-02-26
M
a
r
k
Abr
a
ham
Per
m
it define
.
mdp field
to
a
ssign v
a
lues
commit
|
commitdiff
|
tree
2018-02-26
M
ark Ab
r
aham
Organize f
o
r recor
d
ing 2016-era
r
e
lease note
s
and add
.
.
.
commit
|
commitdiff
|
tree
2018-02-23
Berk H
e
ss
Fix
md
integr
a
tor with N
o
s
e-Hoover cou
p
ling
commit
|
commitdiff
|
tree
2018-02-16
Mar
k
Abrah
a
m
Merge b
r
anch rel
e
ase-2
0
16
i
nto re
l
e
a
se-20
1
8
commit
|
commitdiff
|
tree
2018-02-16
Mark Abraham
Bump
e
d pa
t
ch vers
i
on f
o
r next relea
s
e
commit
|
commitdiff
|
tree
2018-02-16
Berk
Hess
Correct
m
ultisim MP
I
ba
r
rier
commit
|
commitdiff
|
tree
2018-02-16
M
a
rk Abrah
a
m
Vers
i
on 2016
.
5
commit
|
commitdiff
|
tree
2018-02-14
Ma
r
k
A
braham
Merge bra
n
c
h
release-2016 i
n
to releas
e
-2018
commit
|
commitdiff
|
tree
2018-02-14
Ber
k
Hess
Fix range bug
in a
d
d_sele
c
tion_groups
in tngio
.
c
p
p
commit
|
commitdiff
|
tree
2018-02-14
Berk Hess
Fix grompp net ch
a
rge c
h
eck
commit
|
commitdiff
|
tree
2018-02-14
Berk Hess
Fix grompp
n
e
t charge che
c
k
commit
|
commitdiff
|
tree
2018-02-14
Mark
A
braham
P
r
epare release no
t
es fo
r
20
1
8
.
1
commit
|
commitdiff
|
tree
2018-02-13
Mar
k
Ab
r
aham
Use death test only when su
p
ported
commit
|
commitdiff
|
tree
2018-02-08
Mark Abraham
Mer
g
e "Merge bra
n
ch
r
elease-
2
0
1
6 int
o
release-201
8
.
.
.
commit
|
commitdiff
|
tree
2018-02-08
Mark A
b
raham
M
erge branch release-2016 into release-201
8
commit
|
commitdiff
|
tree
2018-02-06
M
a
rk A
b
r
a
ham
Prevent
log file e
n
ergy
a
ve
r
age printing dividing
b
y
.
.
.
commit
|
commitdiff
|
tree
2018-01-24
Mark Abraham
Move Windows icc co
n
f
ig to post-
s
ubmit test
i
ng
commit
|
commitdiff
|
tree
2018-01-18
Berk Hess
Fix
C
OMM removal on part of
t
he system
commit
|
commitdiff
|
tree
2018-01-17
Aleksei I
u
p
ino
v
Fix
b
ox scaling
i
n PME
mixed mode
commit
|
commitdiff
|
tree
2018-01-17
B
e
rk
Hess
Re-ena
b
le GPU with w
a
lls and 1 energy group
commit
|
commitdiff
|
tree
2018-01-16
Be
r
k Hess
Av
o
id mdrun echoing "No option -mu
l
ti"
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraham
Bumped version for
next patc
h
release
commit
|
commitdiff
|
tree
2018-01-11
Mark Abraha
m
Vers
i
on 2018
commit
|
commitdiff
|
tree
2018-01-11
Mark Abrah
a
m
Announce in u
s
er log files th
a
t
features are deprecated
.
commit
|
commitdiff
|
tree
2018-01-11
R
oland Schu
l
z
Fix GM
X
_ENA
B
LE_
A
VX51
2
_TESTS being intern
a
l
commit
|
commitdiff
|
tree
2018-01-10
Mark Abraham
Fix automated GPU ID
assignment
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
U
s
er gu
i
d
e
u
pdates to GPU sectio
n
commit
|
commitdiff
|
tree
2018-01-10
Szi
l
árd Páll
Release notes twe
a
k
s
commit
|
commitdiff
|
tree
2018-01-10
Mark
Abraham
Add release
notes to source
re
p
o
commit
|
commitdiff
|
tree
2018-01-10
Er
i
k
Lindahl
Improve pdb
2
gmx for n
o
n
s
tandar
d
resi
d
ue types
commit
|
commitdiff
|
tree
2018-01-10
Szilárd Páll
Inst
a
ll
g
uide updates
commit
|
commitdiff
|
tree
2018-01-10
Szilárd
P
áll
E
n
vironment vari
a
ble
docs maintenance
commit
|
commitdiff
|
tree
2018-01-10
Aleksei Iu
p
inov
Do
n
ot print P
M
E counte
r
b
reakdown if i
t
'
s empty
commit
|
commitdiff
|
tree
2018-01-10
Ma
r
k Abraham
Handle err
o
n
e
ous command
l
i
n
e args be
t
ter
commit
|
commitdiff
|
tree
2018-01-10
Erik Lindahl
C
l
arif
i
e
d gmx rmsf documentation
commit
|
commitdiff
|
tree
2018-01-09
Mark Ab
r
aham
Clean up user guid
e
for re
l
ease
commit
|
commitdiff
|
tree
2018-01-09
Ma
r
k
Abraham
M
e
rge branch rel
e
ase-2016
i
nto
release-2
0
18
commit
|
commitdiff
|
tree
2018-01-09
Berk
Hess
Do not turn o
n
DLB
a
t
repl
i
ca exchang
e
commit
|
commitdiff
|
tree
2018-01-04
Eri
k
Lind
a
hl
Implement changes for CMake policy 006
8
commit
|
commitdiff
|
tree
2018-01-04
Ma
r
k Abraham
Add test confi
g
o
f GPU build on s
l
a
v
e without G
P
U
commit
|
commitdiff
|
tree
2018-01-04
Paul Baue
r
Fix gm
x
ms
d
when using COM re
m
oval and molecules
commit
|
commitdiff
|
tree
2018-01-03
Erik L
i
ndahl
F
ix inde
x
erro
r
in gmx chi
commit
|
commitdiff
|
tree
2018-01-03
P
aul
B
auer
C
o
r
r
ect d
i
hedral r
e
st
r
aint section in Manua
l
commit
|
commitdiff
|
tree
2018-01-03
E
ri
k
Lindahl
Avoid FTZ triggering simd test fai
l
ur
e
s
commit
|
commitdiff
|
tree
2018-01-02
Erik Lindahl
Fix OpenCL comp
i
les on Mac OS
commit
|
commitdiff
|
tree
2018-01-02
Erik L
i
n
d
ahl
I
m
p
r
ove manual from comments by Gang Liu
commit
|
commitdiff
|
tree
2018-01-02
Erik
L
indahl
Make it explicit that tim
e
u
n
its app
l
y to begin/
e
nd
.
.
.
commit
|
commitdiff
|
tree
2018-01-02
Erik Lind
a
hl
Don'
t
require
match
i
n
g
names b
e
tween rt
p
and
tdb fil
e
s
commit
|
commitdiff
|
tree
2018-01-02
E
r
ik
Lindahl
Don't write re
f
er
e
nce pull gro
u
p
0 to log
commit
|
commitdiff
|
tree
2017-12-30
Mark
A
braham
First release candidate for
v
ersion 20
1
8
commit
|
commitdiff
|
tree
2017-12-26
Erik L
i
nda
h
l
Fi
x
bu
i
ld
s
on ARM
&
c
l
arify
(ARM) GP
U
sup
p
ort
commit
|
commitdiff
|
tree
2017-12-22
Mark Abraham
Merge bran
c
h re
l
e
a
se-2
0
16 i
n
to release-2018
commit
|
commitdiff
|
tree
2017-12-21
Ma
r
k
Abrah
a
m
M
e
rg
e
branch
release-5-1 int
o
r
el
e
ase-2016
commit
|
commitdiff
|
tree
2017-12-21
Mark Abraham
Bu
m
p
m
inor version
f
or th
e
oreti
c
a
l
new r
e
leas
e
commit
|
commitdiff
|
tree
2017-12-21
Pascal
M
erz
Documentation and fixes fo
r
physic
a
l validation
commit
|
commitdiff
|
tree
2017-12-21
Ma
r
k A
b
raham
Update double-p
r
ecision test configuration
s
commit
|
commitdiff
|
tree
2017-12-21
Roland Schul
z
Up
d
at
e
c
hecks
for BuildOwnFFT
commit
|
commitdiff
|
tree
2017-12-20
Mark
A
braham
Use new def
a
ultRealTolerance() to
s
tabilise so
m
e tests
commit
|
commitdiff
|
tree
2017-12-20
Mar
k
Ab
r
a
h
am
Merge "Merge branch release-2
0
16
into re
l
ease-2
0
18
.
.
.
commit
|
commitdiff
|
tree
2017-12-20
Mark Abr
a
ham
Mer
g
e bra
n
ch release-2016 int
o
rel
e
a
s
e-2018
commit
|
commitdiff
|
tree
2017-12-19
Mark Abraha
m
T
h
ird beta rele
a
se of 2
0
18
commit
|
commitdiff
|
tree
2017-12-19
Mark Abraham
Fix t
a
ble tests and
im
p
rove table construct
i
on
commit
|
commitdiff
|
tree
2017-12-19
Berk
H
ess
Ma
k
e oversubsc
r
iption w
a
rning consisten
t
commit
|
commitdiff
|
tree
2017-12-19
C
a
rsten Kutzner
Fix electric
field
.
mdp
d
ocumentat
i
on
commit
|
commitdiff
|
tree
2017-12-19
Erik L
i
n
d
a
hl
Us
e
reduce
d
default to
l
erances for tpx comparison
commit
|
commitdiff
|
tree
2017-12-18
Roland Schulz
F
i
x cmake
e
rror
w
i
th emacs lo
c
k
files
i
n place
commit
|
commitdiff
|
tree
2017-12-17
Rola
n
d Sc
h
u
lz
Chan
g
e avx_128_fm
a
buil
d
to
do
u
ble
commit
|
commitdiff
|
tree
2017-12-17
Roland Schulz
Su
p
port Simd4
N
for SimdRe
a
lWidth<4
commit
|
commitdiff
|
tree
2017-12-14
Erik Linda
h
l
Fix PBC
e
rror
i
n
gmx_sp
a
tial
commit
|
commitdiff
|
tree
2017-12-14
Mar
k
Abra
h
am
Merg
e
"Mer
g
e br
a
nch release
-
2016 into releas
e
-2018
.
.
.
commit
|
commitdiff
|
tree
2017-12-12
Erik Lindahl
D
isallow
ascii formats for gmx
t
rjca
t
commit
|
commitdiff
|
tree
2017-12-12
Mark Abra
h
am
Improve
g
rom
p
p missin
g
-paramet
e
r
s err
o
r me
s
s
a
ge
commit
|
commitdiff
|
tree
2017-12-12
Mark Abraham
Merge br
a
nch rel
e
as
e
-2016 into r
e
lease-
2
018
commit
|
commitdiff
|
tree
2017-12-11
M
a
rk Abraham
Se
c
ond
b
et
a
release of 201
8
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Rem
o
ve duplicated lines from OPLS ffbonded
.
itp
commit
|
commitdiff
|
tree
2017-12-11
R
oland Sch
u
lz
Replace intrinsic with inline asm for AVX512 unit test
commit
|
commitdiff
|
tree
2017-12-11
Erik Lindahl
Don'
t
warn about
NVML
clocks that
a
r
e
a
t
max
commit
|
commitdiff
|
tree
2017-12-11
Berk Hess
Add grompp not
e
fo
r
PR p
c
ouple + posit
i
on
r
es
t
r
aints
commit
|
commitdiff
|
tree
2017-12-10
Erik Lin
d
ahl
Reve
r
t "Dis
a
ble
d
e
f
ault-
o
n
N
VML support
i
n CMake
"
commit
|
commitdiff
|
tree
2017-12-07
Erik Linda
h
l
Add
e
d c
o
ol
quote from
V
iveca's defense
commit
|
commitdiff
|
tree
2017-12-07
Roland Schulz
Fix AWH test acc
u
r
a
c
y
commit
|
commitdiff
|
tree
2017-12-07
Berk Hess
Choose
f
a
ster nbnxn S
I
MD
k
erne
l
s on AMD Zen
commit
|
commitdiff
|
tree
2017-12-07
Rola
n
d Schul
z
Fix
exp test for ICC in doubl
e
commit
|
commitdiff
|
tree
2017-12-07
Ro
l
and Schulz
F
i
x
RelWithAssert
w
ith ICC
commit
|
commitdiff
|
tree
2017-12-07
Aleksei Iupinov
Re
l
axed precision in spline
in
t
erp
o
lation tests
commit
|
commitdiff
|
tree
next