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Disable AllvsAll kernels for very small systems (< 64 atoms).
2010-07-02
Rossen Apostolov
Di
s
a
b
le Al
l
vsAll kernels for very
small systems (<
.
.
.
commit
|
commitdiff
|
tree
2010-06-24
Rossen
Apostolov
Init
i
al C
T
e
s
t
suppor
t
commit
|
commitdiff
|
tree
2010-06-23
Rossen Apostolov
Incre
a
sed
SHARED_VERSION_INFO to 6:0:0 (closin
g
bug
.
.
.
commit
|
commitdiff
|
tree
2010-06-16
Ross
e
n Apostolov
Small cleanup
o
f the openmm section in m
d
run
.
c
commit
|
commitdiff
|
tree
2010-06-16
Rossen Apostolov
M
e
rge branch
'master' of git
.
gromacs
.
org:gromacs
commit
|
commitdiff
|
tree
2010-06-16
Rossen
A
pos
t
olov
Fix
e
d
the command line
o
pti
o
ns
f
o
r GP
U
binaries
.
commit
|
commitdiff
|
tree
2010-06-08
Ross
e
n A
p
ostolov
M
er
g
e bra
n
ch 'master' of g
i
t
.
g
r
oma
c
s
.
or
g
:grom
a
c
s
commit
|
commitdiff
|
tree
2010-06-08
Ross
e
n A
p
o
s
tolov
Added missin
g
C-terminal oxygens
O
C1 and OC2 to the
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Ro
s
sen
A
postolov
I
ssue a warni
n
g ab
o
u
t using hardcod
e
d OB
C
s
c
ale factors
.
.
.
commit
|
commitdiff
|
tree
2010-06-07
Rossen
A
post
o
lov
OpenM
M
interface: issue a warning when the spe
c
ified
.
.
.
commit
|
commitdiff
|
tree
2010-05-14
Rossen
Apostolov
The
r
elative error for calcul
a
tion o
f
Ewald and
P
ME
.
.
.
commit
|
commitdiff
|
tree
2010-05-12
R
o
ss
e
n Aposto
l
o
v
Merge branch 'master' of git
.
g
r
omacs
.
o
rg:groma
c
s
commit
|
commitdiff
|
tree
2010-05-12
R
o
s
s
e
n Apostol
o
v
Fix for
U
rey-Br
a
dley po
t
ential i
n
OpenMM
commit
|
commitdiff
|
tree
2010-05-11
Rossen
A
postolov
Added support for Urey-Bra
d
ley potentials to
t
he openmm
.
.
.
commit
|
commitdiff
|
tree
2010-05-04
Rossen Aposto
l
ov
Fixed improper err
o
r
message in ope
n
mm_wrapp
e
r
.
commit
|
commitdiff
|
tree
2010-04-01
Rossen Apost
o
lov
Minor fixe
s
of typos
.
commit
|
commitdiff
|
tree
2010-03-31
Rossen Apostolov
Fixed a gmx_warning crash in openmm_wrapper
.
cpp
commit
|
commitdiff
|
tree
2010-03-31
Rossen Apostolov
Fixed
s
rc/contri
b
/option
s
.
c to use the ne
w
pa
r
se_common_ar
g
s
.
.
.
commit
|
commitdiff
|
tree
2010-03-27
Ros
s
en Apost
o
lov
OpenMM
:
"
m
d" option
i
s now accepted
.
commit
|
commitdiff
|
tree
2010-03-24
R
o
s
sen
Apostolov
Allowing also CUDA vers
i
ons later t
h
a
n
2
.
3
.
commit
|
commitdiff
|
tree
2010-03-24
R
o
ssen Apostol
o
v
S
i
g
nal ha
n
dling is
now en
a
bled f
o
r the
openmm platform
.
commit
|
commitdiff
|
tree
2010-03-17
Rossen
A
p
o
stolov
op
e
nmm: some cleanup in
m
d
_
ope
n
mm
.
c and
mdru
n
.
c
commit
|
commitdiff
|
tree
2010-03-12
Rossen Apostolov
Enabled checkpoint
s
in
Open
M
M
.
commit
|
commitdiff
|
tree
2010-03-12
Rossen Apo
s
tolov
Automatically
disable
t
h
reads for
OpenMM builds
.
commit
|
commitdiff
|
tree
2010-03-11
R
ossen
Ap
o
stolov
Vari
o
us fi
x
es
.
commit
|
commitdiff
|
tree
2010-03-11
R
oss
e
n
A
p
os
t
ol
o
v
Small fixes
in m
d
run d
e
sc
.
; enable periodic m
o
le
c
ules
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
Ope
n
MM build
n
ot dependent
on fftw anymore
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
f
ixed mdrun verbosity with OpenM
M
bu
i
l
d
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
f
i
x
ed a
miss
i
ng com
m
a and a typo in
openmm
_
wr
a
pper
commit
|
commitdiff
|
tree
2010-03-11
R
ossen Apostolov
E
nalbed
-
m
a
x
h
o
ption for usa
g
e
with OpenMM binaries
commit
|
commitdiff
|
tree
2010-03-11
Rossen Apostolov
Cleaned up do_md_openmm
.
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
Delete src/
k
ernel/do_md_open
m
m_nopatch
.
h, it's not
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Szilard
P
all
Minor cle
a
nup,
s
ome rearrang
a
ment
s
, a
n
d commen
t
ing
.
commit
|
commitdiff
|
tree
2010-03-11
Szil
a
rd Pall
Reverte
d
stupi
d
change in
C
MaleLists
.
txt
commit
|
commitdiff
|
tree
2010-03-11
Szilard Pall
Renamed md_openmm into
o
pe
n
mm_wrappe
r
, and
d
o_md_ope
n
m
m
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Ro
s
sen Apostolov
Reworked the
i
nt
e
gr
a
tor and thermo
s
tat optio
n
s
.
commit
|
commitdiff
|
tree
2010-03-11
R
o
ssen
Apostolov
Fixed the wrong
output time frames
commit
|
commitdiff
|
tree
2010-03-11
Rossen
Apostol
o
v
do_md_opennmm
.
h
(
aka
p
atched) now works but the time
.
.
.
commit
|
commitdiff
|
tree
2010-03-11
Ro
s
sen Apo
s
tol
o
v
Initial
p
o
rting
,
d
o_m
d
_op
e
n
m
m_nopatch
.
h is u
s
e
d
.
commit
|
commitdiff
|
tree
2009-10-02
R
o
ssen Apostolov
Users are n
o
w
refered to
t
he new
w
e
bsite
i
n case of
.
.
.
commit
|
commitdiff
|
tree
2009-08-17
Ros
s
e
n
Apos
t
olov
F
i
xed in
c
o
rrect scaling of forces in reciprocal space
.
.
.
commit
|
commitdiff
|
tree