GROMACS $VER Online Reference

-http://www.gromacs.org
-gromacs@gromacs.org
- - -EOD - -echo "Generating html manual for GROMACS programs" -echo "-------------------------------------------" - -cd $dir - -foreach program ( $PROGRAMS ) - if ( ( -x $GMXBINDIR/$program ) && ( $program != "my_dssp" ) && ( $program != "luck" ) ) then - echo -n "$program " - cd $HTMLOL - $GMXBINDIR/$program -quiet -man html >& /dev/null - endif - endif -end - -#last line diff --git a/src/contrib/scripts/mknroff b/src/contrib/scripts/mknroff deleted file mode 100755 index 83cb03a657..0000000000 --- a/src/contrib/scripts/mknroff +++ /dev/null @@ -1,32 +0,0 @@ -#!/bin/csh -f -# -# This script will generate all manual pages -# in the current directory. It is recommeded that -# you run it from the man/man1 subdirectory under -# your GROMACS source tree. The manual pages will -# be installed by the "make install" command. - -echo "Generating unix manual for GROMACS programs" -echo "-------------------------------------------" - -if ( $#argv < 1 ) then - echo "Error: provide the binary directory as first argument." - exit -endif - -set GMXBINDIR = $1 - -set dir = $cwd - - -cd $GMXBINDIR -set PROGRAMS = [a-z]* -cd $dir - -foreach program ( $PROGRAMS ) -if ( -x $GMXBINDIR/$program ) then -echo -n " $program" -$GMXBINDIR/$program -man nroff >& /dev/null -if ( -f $program.nroff ) mv $program.nroff $program.1 -endif -end diff --git a/src/contrib/scripts/mkonline b/src/contrib/scripts/mkonline deleted file mode 100755 index 601e1b5086..0000000000 --- a/src/contrib/scripts/mkonline +++ /dev/null @@ -1,135 +0,0 @@ -#!/bin/csh -f - -if ( $#argv < 1 ) then - echo "Error: provide the binary directory as first argument." - exit -endif - -set GMXBINDIR = $1 - -set dir = $cwd - -set VER = 3.0 -set MANDIR = online -set HTML = $cwd/html -set HTMLOL = $HTML/$MANDIR -set HTMLIDX = $HTML/$MANDIR.html -set TEXDIR = $cwd/doc -set TEXIDX = $TEXDIR/proglist.tex -set PROGFILE = ../programs.txt - -set GENERAL = "getting_started:Getting_Started flow:Flow_Chart files:File_Formats mdp_opt:mdp_options" - -cd $GMXBINDIR -set PROGRAMS = [a-z]* -cd $dir - -echo "generating html page $HTMLIDX" - -if ( ! -d $HTML ) mkdir $HTML -if ( -f $HTMLIDX ) \rm $HTMLIDX -touch $HTMLIDX - -if ( ! -d $TEXDIR ) mkdir $TEXDIR - -cat > $HTMLIDX << EOD - -GROMACS $VER Online Reference - - -

GROMACS $VER Online Reference

- - - - - -
-
General
-EOD -foreach i ( $GENERAL ) - set file = `echo $i | cut -d: -f1` - set desc = `echo $i | cut -d: -f2 | sed 's/_/ /g'` - echo ""$desc"" >> $HTMLIDX - echo "

" >> $HTMLIDX -end -cat >> $HTMLIDX <FAQ -
-
GROMACS homepage - -
Programs
- -Options -
-EOD -foreach program ( $PROGRAMS ) - echo "
$program" >> $HTMLIDX -end -cat >> $HTMLIDX << EOD - -
-

Programs by Topic

- -EOD -awk -F '|' -v mandir=$MANDIR '{\ - if (NF) {\ - if ( $1 == "HEAD" ) {\ - hnr++;\ - printf("%s
\n",hnr,$2);\ - }\ - }\ -}' $PROGFILE >> $HTMLIDX -echo " " >> $HTMLIDX -awk -F '|' -v mandir=$MANDIR '{\ - if (NF) {\ - if ( $1 == "HEAD" ) {\ - hnr++;\ - printf("\n\n",hnr);\ - printf("\n

\n");\ - printf("
%s\n",$2);\ - } else if ( $1 == "END" ) {\ - printf("

\n");\ - } else {\ - printf("%s%s\n",mandir,$1,$1,$2);\ - }\ - }\ -}' $PROGFILE >> $HTMLIDX -cat >> $HTMLIDX < -

-http://www.gromacs.org
-gromacs@gromacs.org
- - -EOD - -echo "generating latex page $TEXIDX" - -if ( -f $TEXIDX ) \rm $TEXIDX -touch $TEXIDX - -echo "\\begin{description}" >> $TEXIDX -awk -F '|' -v mandir=$MANDIR -v longest="mk\\_angndx" '{\ - gsub("_","\\_",$0);\ - gsub("%","\\%",$0);\ - if (NF) {\ - if ( $1 == "LONGEST" ) {\ - longest = $2;\ - } else if ( $1 == "HEAD" ) {\ - printf("\\item {\\large\\bf %s}\n",$2);\ - printf("\\vspace{-2ex}\\begin{tabbing}\n");\ - printf("{\\bf %s} \\= \\kill\n",longest);\ - } else if ( $1 == "END" ) {\ - printf("\\end{tabbing}\\vspace{-2ex}\n\n");\ - } else {\ - printf("{\\bf %s} \\> %s \\\\\n",$1,$2);\ - }\ - }\ -}' $PROGFILE | sed -e 's/e\.g\./{\\eg}/g' >> $TEXIDX -echo "\\end{description}" >> $TEXIDX - -#last line diff --git a/src/contrib/scripts/mktex b/src/contrib/scripts/mktex deleted file mode 100755 index 064782acde..0000000000 --- a/src/contrib/scripts/mktex +++ /dev/null @@ -1,53 +0,0 @@ -#!/bin/csh -f - -if ( $#argv < 2 ) then - echo "Error: provide the binary directory as first argument," - echo "and the location of programs.txt as the second." - exit -endif - -set GMXBINDIR = $1 -set PROGFILE = $2 - -set dir = $cwd - -set VER = 3.0 -set TEXDIR = $cwd/doc -set TEXIDX = $TEXDIR/proglist.tex - -set GENERAL = "getting_started:Getting_Started flow:Flow_Chart files:File_Formats mdp_opt:mdp_options" - -cd $GMXBINDIR -set PROGRAMS = [a-z]* -cd $dir - -echo "" -echo "generating latex page $TEXIDX" -echo "--------------------------------" - -if ( ! -d $TEXDIR ) mkdir $TEXDIR - -if ( -f $TEXIDX ) \rm $TEXIDX -touch $TEXIDX - -echo "\\begin{description}" >> $TEXIDX -awk -F '|' -v longest="mk\\_angndx" '{\ - gsub("_","\\_",$0);\ - gsub("%","\\%",$0);\ - if (NF) {\ - if ( $1 == "LONGEST" ) {\ - longest = $2;\ - } else if ( $1 == "HEAD" ) {\ - printf("\\item {\\large\\bf %s}\n",$2);\ - printf("\\vspace{-2ex}\\begin{tabbing}\n");\ - printf("{\\bf %s} \\= \\kill\n",longest);\ - } else if ( $1 == "END" ) {\ - printf("\\end{tabbing}\\vspace{-2ex}\n\n");\ - } else {\ - printf("{\\bf %s} \\> %s \\\\\n",$1,$2);\ - }\ - }\ -}' $PROGFILE | sed -e 's/e\.g\./{\\eg}/g' >> $TEXIDX -echo "\end{description}" >> $TEXIDX - -#last line -- 2.11.4.GIT

-GROMACS 3.0 -Online Reference

General

Programs

Programs by Topic