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commit	cc33f29a858cf32541eb48cfebd35990e5f41b37
author	Roland Schulz <roland@utk.edu>
	Sun, 15 Jan 2012 06:18:38 +0000 (15 01:18 -0500)
committer	Szilard Pall <pszilard@cbr.su.se>
	Thu, 2 Feb 2012 17:32:25 +0000 (2 18:32 +0100)
tree	dc90dc9ae79be825c624eec4a67e7968481cd55c	tree \| snapshot (tar.gz zip)
parent	c2b3c863199be5d8c86eb21d4a469df3149aeca7	commit \| diff

Merges in threading branch as one squashed commit

Implements OpenMP threading for PME

All PME (including SSE) code by Berk.
FFT, timer, and CPU affinity code by Roland.
Two bugfixes by Szilard.

Conflicts:
include/gmx_wallcycle.h
src/gmxlib/trxio.c
src/mdlib/Makefile.am
src/mdlib/fft5d.c
src/mdlib/gmx_wallcycle.c
src/tools/acf.test.c

Change-Id: I4bdd0e29caf135ba6b4cc7297640f29f0d136656

18 files changed:

CMakeLists.txt		diff \| blob \| blame \| history
cmake/FindFFTW3.cmake		diff \| blob \| blame \| history
cmake/FindFFTW3F.cmake		diff \| blob \| blame \| history
cmake/gmxCFlags.cmake		diff \| blob \| blame \| history
include/gmx_parallel_3dfft.h		diff \| blob \| blame \| history
include/gmx_wallcycle.h		diff \| blob \| blame \| history
include/network.h		diff \| blob \| blame \| history
include/pme.h		diff \| blob \| blame \| history
src/gmxlib/calcgrid.c		diff \| blob \| blame \| history
src/gmxlib/network.c		diff \| blob \| blame \| history
src/kernel/runner.c		diff \| blob \| blame \| history
src/mdlib/fft5d.c		diff \| blob \| blame \| history
src/mdlib/fft5d.h		diff \| blob \| blame \| history
src/mdlib/gmx_parallel_3dfft.c		diff \| blob \| blame \| history
src/mdlib/gmx_wallcycle.c		diff \| blob \| blame \| history
src/mdlib/pme.c		diff \| blob \| blame \| history
src/mdlib/pme_sse_single.h	[new file with mode: 0644]	blob
src/tools/gmx_membed.c		diff \| blob \| blame \| history

The ultimate molecular dynamics simulation package

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