Fixing of things associated with aminoacid.rtp header
commit84ad12a3c6b0dadcc5f6921c7aaaadbd8ee9045b
authorMark Abraham <mark.j.abraham@gmail.com>
Sat, 5 May 2012 03:54:18 +0000 (5 13:54 +1000)
committerMark Abraham <mark.j.abraham@gmail.com>
Sat, 11 Aug 2012 07:10:22 +0000 (11 17:10 +1000)
tree16c22c3b56c1838353033eaedc66817eda3d68f7
parent69facd7185d86fedd6d0a305bebfdab7e4519f70
Fixing of things associated with aminoacid.rtp header

Code, commenting and documentation changes, including
* expanded self-documention boolean variable names
* clean up of dihedral generation code
* more reuse of output code
* more use of t_restp objects
* documentation in every force field's .rtp files
* clarified why and when generated dihedrals get superseded

Change-Id: I384f498f1124795e33c0ec1707ad52558bf15eb1
41 files changed:
include/gen_ad.h
include/hackblock.h
share/top/amber03.ff/aminoacids.rtp
share/top/amber03.ff/dna.rtp
share/top/amber03.ff/rna.rtp
share/top/amber94.ff/aminoacids.rtp
share/top/amber94.ff/dna.rtp
share/top/amber94.ff/rna.rtp
share/top/amber96.ff/aminoacids.rtp
share/top/amber96.ff/dna.rtp
share/top/amber96.ff/rna.rtp
share/top/amber99.ff/aminoacids.rtp
share/top/amber99.ff/dna.rtp
share/top/amber99.ff/rna.rtp
share/top/amber99sb-ildn.ff/aminoacids.rtp
share/top/amber99sb-ildn.ff/dna.rtp
share/top/amber99sb-ildn.ff/rna.rtp
share/top/amber99sb.ff/aminoacids.rtp
share/top/amber99sb.ff/dna.rtp
share/top/amber99sb.ff/rna.rtp
share/top/amberGS.ff/aminoacids.rtp
share/top/amberGS.ff/dna.rtp
share/top/amberGS.ff/rna.rtp
share/top/charmm27.ff/aminoacids.rtp
share/top/charmm27.ff/dna.rtp
share/top/charmm27.ff/lipids.rtp
share/top/charmm27.ff/rna.rtp
share/top/encads.ff/aminoacids.rtp
share/top/encadv.ff/aminoacids.rtp
share/top/gmx.ff/aminoacids.rtp
share/top/gmx2.ff/aminoacids.rtp
share/top/gromos43a1.ff/aminoacids.rtp
share/top/gromos43a2.ff/aminoacids.rtp
share/top/gromos45a3.ff/aminoacids.rtp
share/top/gromos53a5.ff/aminoacids.rtp
share/top/gromos53a6.ff/aminoacids.rtp
share/top/oplsaa.ff/aminoacids.rtp
src/kernel/g_x2top.c
src/kernel/gen_ad.c
src/kernel/pdb2top.c
src/kernel/resall.c