Moved random number generator code to separate dir.
commit0a4f0948aa2b8a1f2132603836f1056bf0d17255
authorDavid van der Spoel <spoel@xray.bmc.uu.se>
Sun, 19 Jan 2014 07:51:06 +0000 (19 08:51 +0100)
committerGerrit Code Review <gerrit@gerrit.gromacs.org>
Tue, 28 Jan 2014 21:43:40 +0000 (28 22:43 +0100)
tree6c7877697ff969073ae3cd4d140f3b0f420cf997
parentba7db18082bda202aabfa29418b6d7ac74a7dd7b
Moved random number generator code to separate dir.

GROMACS sports two random number generators for historical
reason. The oldest one is phased out in this patch.
Changing the random number
generator means that e.g. replica exchange simulations will
not be reproducible (if they ever were in practice).

Change-Id: If24f1019fba9b9412713b5fe04b5c0a8a7638468
42 files changed:
src/gromacs/CMakeLists.txt
src/gromacs/gmxana/gmx_cluster.c
src/gromacs/gmxana/gmx_dipoles.cpp
src/gromacs/gmxana/gmx_dyndom.c
src/gromacs/gmxana/gmx_genbox.cpp
src/gromacs/gmxana/gmx_genconf.c
src/gromacs/gmxana/gmx_genion.c
src/gromacs/gmxana/gmx_nmens.c
src/gromacs/gmxana/gmx_nmtraj.c
src/gromacs/gmxana/gmx_pme_error.cpp
src/gromacs/gmxana/gmx_wham.cpp
src/gromacs/gmxana/nrama.c
src/gromacs/gmxana/nsfactor.c
src/gromacs/gmxana/sortwater.c [moved from src/gromacs/gmxlib/sortwater.c with 97% similarity]
src/gromacs/gmxana/sortwater.h [moved from src/gromacs/legacyheaders/sortwater.h with 94% similarity]
src/gromacs/gmxlib/checkpoint.c
src/gromacs/gmxlib/copyrite.cpp
src/gromacs/gmxlib/rando.c [deleted file]
src/gromacs/gmxpreprocess/gen_maxwell_velocities.c [moved from src/gromacs/gmxlib/random.c with 93% similarity]
src/gromacs/gmxpreprocess/gen_maxwell_velocities.h [moved from src/gromacs/legacyheaders/random.h with 74% similarity]
src/gromacs/gmxpreprocess/grompp.c
src/gromacs/gmxpreprocess/nm2type.c
src/gromacs/gmxpreprocess/x2top.c
src/gromacs/legacyheaders/update.h
src/gromacs/mdlib/coupling.c
src/gromacs/mdlib/domdec_top.c
src/gromacs/mdlib/expanded.c
src/gromacs/mdlib/init.c
src/gromacs/mdlib/minimize.c
src/gromacs/mdlib/partdec.c
src/gromacs/mdlib/sim_util.c
src/gromacs/mdlib/tpi.c
src/gromacs/mdlib/update.c
src/gromacs/random/CMakeLists.txt [new file with mode: 0644]
src/gromacs/random/random.c [moved from src/gromacs/gmxlib/gmx_random.c with 99% similarity]
src/gromacs/random/random.h [moved from src/gromacs/legacyheaders/gmx_random.h with 99% similarity]
src/gromacs/random/random_gausstable.h [moved from src/gromacs/gmxlib/gmx_random_gausstable.h with 99% similarity]
src/gromacs/selection/tests/nbsearch.cpp
src/gromacs/statistics/statistics_test.c
src/gromacs/tools/convert_tpr.c
src/gromacs/trajectoryanalysis/modules/freevolume.cpp
src/programs/mdrun/repl_ex.c