Intermediate commit to track changes to manual
commit060e29691c3374a18ddee12028d8ed936c8cca05
authorPaul Bauer <paul.bauer.q@gmail.com>
Mon, 6 Nov 2017 15:03:46 +0000 (6 16:03 +0100)
committerMark Abraham <mark.j.abraham@gmail.com>
Sat, 21 Apr 2018 13:09:22 +0000 (21 15:09 +0200)
tree2a39ffd699b97e8658f0d3e85c3fff732026454a
parentac331ffd5e49292c7030e0777668859b0e27fa10
Intermediate commit to track changes to manual

This is just an intermediate commit to make sure git properly tracks the
changes to the files for the manual, and is not expected to compile
the manual at all.

This change does the conversion from tex to rst, while keeping the file
names.

The original LaTex inputs are included in a pandoc conversion friendly
format in the orignal-conversion-friendly subfolder, together with the
output from the automatic conversion.

Change-Id: I3986740ab42a4054c4d0f9f67923ebf7a51320d9
32 files changed:
docs/manual/algorithms.tex
docs/manual/analyse.tex
docs/manual/averages.tex
docs/manual/defunits.tex
docs/manual/files.tex
docs/manual/forcefield.tex
docs/manual/gmxmanual.cls [deleted file]
docs/manual/gromacs.tex
docs/manual/implement.tex
docs/manual/index.gmx [deleted file]
docs/manual/index.rst [new file with mode: 0644]
docs/manual/intro.tex
docs/manual/monster.bib
docs/manual/original-conversion-friendly/algorithms.tex [copied from docs/manual/algorithms.tex with 97% similarity]
docs/manual/original-conversion-friendly/analyse.tex [copied from docs/manual/analyse.tex with 97% similarity]
docs/manual/original-conversion-friendly/averages.tex [copied from docs/manual/averages.tex with 91% similarity]
docs/manual/original-conversion-friendly/defunits.tex [copied from docs/manual/defunits.tex with 75% similarity]
docs/manual/original-conversion-friendly/files.tex [new file with mode: 0644]
docs/manual/original-conversion-friendly/forcefield.tex [copied from docs/manual/forcefield.tex with 96% similarity]
docs/manual/original-conversion-friendly/gromacs.rst [new file with mode: 0644]
docs/manual/original-conversion-friendly/gromacs.tex [copied from docs/manual/gromacs.tex with 100% similarity]
docs/manual/original-conversion-friendly/implement.tex [copied from docs/manual/implement.tex with 96% similarity]
docs/manual/original-conversion-friendly/intro.tex [copied from docs/manual/intro.tex with 96% similarity]
docs/manual/original-conversion-friendly/jacs.cls [new file with mode: 0644]
docs/manual/original-conversion-friendly/macros.tex [moved from docs/manual/macros.tex with 100% similarity]
docs/manual/original-conversion-friendly/programs.tex [copied from docs/manual/programs.tex with 100% similarity]
docs/manual/original-conversion-friendly/special.tex [copied from docs/manual/special.tex with 96% similarity]
docs/manual/original-conversion-friendly/topology.tex [copied from docs/manual/topology.tex with 82% similarity]
docs/manual/programs.tex
docs/manual/proteins.bst [deleted file]
docs/manual/special.tex
docs/manual/topology.tex