Re-organize BlueGene toolchain files
[gromacs.git] / src / gmxlib / invblock.c
blobdc7b4a8a8cd8b9bab8f07baeb088c713d31074c0
1 /*
2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
5 * Copyright (c) 2001-2004, The GROMACS development team,
6 * check out http://www.gromacs.org for more information.
7 * Copyright (c) 2012, by the GROMACS development team, led by
8 * David van der Spoel, Berk Hess, Erik Lindahl, and including many
9 * others, as listed in the AUTHORS file in the top-level source
10 * directory and at http://www.gromacs.org.
12 * GROMACS is free software; you can redistribute it and/or
13 * modify it under the terms of the GNU Lesser General Public License
14 * as published by the Free Software Foundation; either version 2.1
15 * of the License, or (at your option) any later version.
17 * GROMACS is distributed in the hope that it will be useful,
18 * but WITHOUT ANY WARRANTY; without even the implied warranty of
19 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
20 * Lesser General Public License for more details.
22 * You should have received a copy of the GNU Lesser General Public
23 * License along with GROMACS; if not, see
24 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
25 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
27 * If you want to redistribute modifications to GROMACS, please
28 * consider that scientific software is very special. Version
29 * control is crucial - bugs must be traceable. We will be happy to
30 * consider code for inclusion in the official distribution, but
31 * derived work must not be called official GROMACS. Details are found
32 * in the README & COPYING files - if they are missing, get the
33 * official version at http://www.gromacs.org.
35 * To help us fund GROMACS development, we humbly ask that you cite
36 * the research papers on the package. Check out http://www.gromacs.org.
38 /* This file is completely threadsafe - keep it that way! */
39 #ifdef HAVE_CONFIG_H
40 #include <config.h>
41 #endif
43 #include "typedefs.h"
44 #include "smalloc.h"
45 #include "invblock.h"
46 #include "gmx_fatal.h"
48 atom_id *make_invblock(const t_block *block,int nr)
50 int i,j;
51 atom_id *invblock;
53 snew(invblock,nr+1);
54 /* Mark unused numbers */
55 for (i=0; i<=nr; i++)
56 invblock[i]=NO_ATID;
57 for (i=0; (i<block->nr); i++)
58 for (j=block->index[i]; (j<block->index[i+1]); j++)
59 if (invblock[j] == NO_ATID)
60 invblock[j]=i;
61 else
62 gmx_fatal(FARGS,"Double entries in block structure. Item %d is in blocks %d and %d\n"
63 " Cannot make an unambiguous inverse block.",
64 j,i,invblock[j]);
65 return invblock;
68 atom_id *make_invblocka(const t_blocka *block,int nr)
70 int i,j;
71 atom_id *invblock;
73 snew(invblock,nr+1);
74 /* Mark unused numbers */
75 for (i=0; i<=nr; i++)
76 invblock[i]=NO_ATID;
77 for (i=0; (i<block->nr); i++)
78 for (j=block->index[i]; (j<block->index[i+1]); j++)
79 if (invblock[block->a[j]] == NO_ATID)
80 invblock[block->a[j]]=i;
81 else
82 gmx_fatal(FARGS,"Double entries in block structure. Item %d is in blocks %d and %d\n"
83 " Cannot make an unambiguous inverse block.",
84 j,i,invblock[block->a[j]]);
85 return invblock;