t4049: refocus tests
The primary thing Linus's patch wanted to change was to make sure
that 0-line change appears for a mode-only change. Update the
first test to chmod a file that we can see in the output (limited
by --stat-count) to demonstrate it. Also make sure to use test_chmod
and compare the index and the tree, so that we can run this test
even on a filesystem without permission bits.
Later two tests are about fixes to separate issues that were
introduced and/or uncovered by Linus's patch as a side effect, but
the issues are not related to mode-only changes. Remove chmod from
the tests.
Signed-off-by: Junio C Hamano <gitster@pobox.com>